EY736382

Overview
NameEY736382
Unique NameEY736382
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736382 vs. ExPASy Swiss-Prot
Match: PSMD4_ARATH (26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis thaliana GN=MBP1 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.265e-38
Identity = 79/134 (58.96%), Postives = 98/134 (73.13%), Query Frame = 1
Query:  178 MVLEATMICIDNSEWMRNGDDSPSRLRARADAGSLICGANTQSNPENTLGILTMGGKGVPV*TNPRTDLGKILACMHELDIGGEMNIGRGIQVARGARGHGENGASVQXXXXXXXXPVKCDXKVMVIMAKHSRR 579
            MVLEATMICIDNSEWMRNGD SPSRL+A+ +A +L+CGA TQSNPENT+GILTM GKGV V T P +DLGKILACMH LD+GGE+N+   IQ+A+ A  H +N    Q        P+K + K + I+ K  ++
Sbjct:    1 MVLEATMICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVRVLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKYEKKALEIVGKRLKK 134          
BLAST of EY736382 vs. ExPASy Swiss-Prot
Match: PSMD4_DICDI (26S proteasome non-ATPase regulatory subunit 4 OS=Dictyostelium discoideum GN=psmD4 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.186e-21
Identity = 53/134 (39.55%), Postives = 80/134 (59.70%), Query Frame = 1
Query:  178 MVLEATMICIDNSEWMRNGDDSPSRLRARADAGSLICGANTQSNPENTLGILTMGGKGVPV*TNPRTDLGKILACMHELDIGGEMNIGRGIQVARGARGHGENGASVQXXXXXXXXPVKCDXKVMVIMAKHSRR 579
            M LEAT++C+DNSEWMRNGD +PSR  A+ DA +LIC + TQSNPE+ + I++M GK   V      +L KIL+   EL I G+++    +Q+A+ A  H +N             P+K   + ++ +AK  ++
Sbjct:    1 MTLEATIVCLDNSEWMRNGDFTPSRSEAQKDAVNLICASKTQSNPESAVSIMSMAGKKPEVLVTLTQELSKILSGAQELKINGKIDFSTTMQIAQLALRHRQNNHQHPRIIAFVGSPLKETKEELIQLAKRLKK 134          
BLAST of EY736382 vs. ExPASy Swiss-Prot
Match: RPN10_SCHPO (26S proteasome regulatory subunit rpn10 OS=Schizosaccharomyces pombe GN=rpn10 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.070e-20
Identity = 54/134 (40.30%), Postives = 72/134 (53.73%), Query Frame = 1
Query:  178 MVLEATMICIDNSEWMRNGDDSPSRLRARADAGSLICGANTQSNPENTLGILTMGGKGVPV*TNPRTDLGKILACMHELDIGGEMNIGRGIQVARGARGHGENGASVQXXXXXXXXPVKCDXKVMVIMAKHSRR 579
            MVLEATMI IDNSEWM NGD  P+R  A+ D   +I       NPEN  G++T+G     V +    D GK L+ MH+L + G    G GIQ+A+ A  H EN    Q        P+  D K ++ +AK  ++
Sbjct:    1 MVLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKK 134          
BLAST of EY736382 vs. ExPASy Swiss-Prot
Match: PSMD4_MOUSE (26S proteasome non-ATPase regulatory subunit 4 OS=Mus musculus GN=Psmd4 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.875e-19
Identity = 51/134 (38.06%), Postives = 81/134 (60.45%), Query Frame = 1
Query:  178 MVLEATMICIDNSEWMRNGDDSPSRLRARADAGSLICGANTQSNPENTLGILTMGGKGVPV*TNPRTDLGKILACMHELDIGGEMNIGRGIQVARGARGHGENGASVQXXXXXXXXPVKCDXKVMVIMAKHSRR 579
            MVLE+TM+C+DNSE+MRNGD  P+RL+A+ DA +++C + T+SNPEN +G++T+      V T    D G+IL+ +H +   G++    GI+VA  A  H +              PV+ + K +V +AK  ++
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITL-ANDCEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKK 133          
BLAST of EY736382 vs. ExPASy Swiss-Prot
Match: PSMD4_HUMAN (26S proteasome non-ATPase regulatory subunit 4 OS=Homo sapiens GN=PSMD4 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.875e-19
Identity = 51/134 (38.06%), Postives = 81/134 (60.45%), Query Frame = 1
Query:  178 MVLEATMICIDNSEWMRNGDDSPSRLRARADAGSLICGANTQSNPENTLGILTMGGKGVPV*TNPRTDLGKILACMHELDIGGEMNIGRGIQVARGARGHGENGASVQXXXXXXXXPVKCDXKVMVIMAKHSRR 579
            MVLE+TM+C+DNSE+MRNGD  P+RL+A+ DA +++C + T+SNPEN +G++T+      V T    D G+IL+ +H +   G++    GI+VA  A  H +              PV+ + K +V +AK  ++
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITL-ANDCEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKK 133          
BLAST of EY736382 vs. ExPASy Swiss-Prot
Match: PSMD4_BOVIN (26S proteasome non-ATPase regulatory subunit 4 OS=Bos taurus GN=PSMD4 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.875e-19
Identity = 51/134 (38.06%), Postives = 81/134 (60.45%), Query Frame = 1
Query:  178 MVLEATMICIDNSEWMRNGDDSPSRLRARADAGSLICGANTQSNPENTLGILTMGGKGVPV*TNPRTDLGKILACMHELDIGGEMNIGRGIQVARGARGHGENGASVQXXXXXXXXPVKCDXKVMVIMAKHSRR 579
            MVLE+TM+C+DNSE+MRNGD  P+RL+A+ DA +++C + T+SNPEN +G++T+      V T    D G+IL+ +H +   G++    GI+VA  A  H +              PV+ + K +V +AK  ++
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITL-ANDCEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKK 133          
BLAST of EY736382 vs. ExPASy Swiss-Prot
Match: RPN10_YEAST (26S proteasome regulatory subunit RPN10 OS=Saccharomyces cerevisiae GN=RPN10 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 3.883e-15
Identity = 45/130 (34.62%), Postives = 71/130 (54.62%), Query Frame = 1
Query:  178 MVLEATMICIDNSEWMRNGDDSPSRLRARADAGSLICGANTQSNPENTLGILTMGGKGVPV*TNPRTDLGKILACMHELDIGGEMNIGRGIQVARGARGHGENGASVQXXXXXXXXPVKCDXKVMVIMAK 567
            MVLEAT++ IDNSE+ RNGD   +R  A+ D+   I  A   SNPENT+G+++  G    V +    + GKILA +H+  I G++++   +Q+A+    H +N    Q        P+      ++ +AK
Sbjct:    1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAK 130          
BLAST of EY736382 vs. ExPASy Swiss-Prot
Match: PSMD4_DROME (26S proteasome non-ATPase regulatory subunit 4 OS=Drosophila melanogaster GN=Pros54 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.476e-14
Identity = 46/134 (34.33%), Postives = 72/134 (53.73%), Query Frame = 1
Query:  178 MVLEATMICIDNSEWMRNGDDSPSRLRARADAGSLICGANTQSNPENTLGILTMGGKGVPV*TNPRTDLGKILACMHELDIGGEMNIGRGIQVARGARGHGENGASVQXXXXXXXXPVKCDXKVMVIMAKHSRR 579
            MVLE+TMIC DNS++ RNGD  P+RL  + D  +L+C    +SNPEN +G++T+    V V     +D G+I + MH +   GE+N+  GI++A     H +              P+  +   +V  AK  ++
Sbjct:    1 MVLESTMICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNT-VEVLATLTSDAGRIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINHEEGDLVKQAKRLKK 133          
BLAST of EY736382 vs. ExPASy Swiss-Prot
Match: PSMD4_SCHMA (26S proteasome non-ATPase regulatory subunit 4 OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.356e-12
Identity = 45/134 (33.58%), Postives = 70/134 (52.24%), Query Frame = 1
Query:  178 MVLEATMICIDNSEWMRNGDDSPSRLRARADAGSLICGANTQSNPENTLGILTMGGKGVPV*TNPRTDLGKILACMHELDIGGEMNIGRGIQVARGARGHGENGASVQXXXXXXXXPVKCDXKVMVIMAKHSRR 579
            M  EAT+I +DNS++MRNGD  P+RL+A+ DA  LIC +  Q NPENT+G+L++      V      D+ KI   +H ++  G +     I++A  A  H +              P+  D K +  +AK  ++
Sbjct:    1 MSQEATIIAVDNSDYMRNGDFFPTRLQAQNDAVGLICQSKRQRNPENTIGLLSLA--NTEVLCTLTNDVSKIYNRLHLVEPKGRIIFCSSIRIAHLALRHRQLRHQKMRIVCFIGSPILEDEKELTRLAKRLKK 132          
BLAST of EY736382 vs. ExPASy Swiss-Prot
Match: PIPSL_HUMAN (Putative PIP5K1A and PSMD4-like protein OS=Homo sapiens GN=PIPSL PE=5 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.356e-12
Identity = 44/128 (34.38%), Postives = 69/128 (53.91%), Query Frame = 1
Query:  184 LEATMICIDNSEWMRNGDDSPSRLRARADAGSLICGANTQSNPENTLGILTMGGKGVPV*TNPRTDLGKILACMHELDIGGEMNIGRGIQVARGARGHGENGASVQXXXXXXXXPVKCDXKVMVIMAK 567
            L+     +DNSE+M NGD  P+RL+A+ DA + +C + T+SNPEN +G++T+      V T    D G+IL+ +H +   G++    GI VA  A  H +              PV+ + K +V +AK
Sbjct:  488 LQMLTTSVDNSEYMGNGDFLPTRLQAQQDAVNTVCHSKTRSNPENNVGLITL-DNDCEVLTTLTPDTGRILSKLHTVQPKGKITFCMGIHVAHLALKHRQGNNHKIRIIAFVGNPVEDNEKNLVKLAK 614          
The following BLAST results are available for this feature:
BLAST of EY736382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PSMD4_ARATH3.265e-3858.9626S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_DICDI6.186e-2139.5526S proteasome non-ATPase regulatory subunit 4 OS=... [more]
RPN10_SCHPO3.070e-2040.3026S proteasome regulatory subunit rpn10 OS=Schizos... [more]
PSMD4_MOUSE9.875e-1938.0626S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_HUMAN9.875e-1938.0626S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_BOVIN9.875e-1938.0626S proteasome non-ATPase regulatory subunit 4 OS=... [more]
RPN10_YEAST3.883e-1534.6226S proteasome regulatory subunit RPN10 OS=Sacchar... [more]
PSMD4_DROME1.476e-1434.3326S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_SCHMA2.356e-1233.5826S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PIPSL_HUMAN2.356e-1234.38Putative PIP5K1A and PSMD4-like protein OS=Homo sa... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-015-F05-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736382 ID=EY736382; Name=EY736382; organism=Citrus sinensis; type=EST; length=907bp
ACCACCCCCAAATATATATTTTTTTTTTGTATGNNNNGAGAACACGATCG
CTTAGAGGTACAGGTCCGGAATCCCTAGGTCGACCACGCGTCCGCGGACG
CGTGGGAACATAAAAGATCGATTCAGAGCTCTTCTGCATACTCTCGTCTT
CTCGTACTAAAAAATTCAATCACAGCCATGGTTCTCGAGGCGACTATGAT
ATGCATTGACAATTCGGAATGGATGCGAAACGGCGATGACTCTCCCTCAC
GATTACGAGCTCGAGCGGACGCCGGTAGTCTTATTTGTGGAGCCAACACA
CAATCGAACCCGGAGAATACCCTGGGGATATTGACGATGGGTGGCAAAGG
GGTTCCTGTTTAGACTAATCCTAGGACTGATCTTGGGAAAATCCTAGCTT
GCATGCATGAGCTTGATATTGGGGGTGAGATGAACATCGGGAGAGGAATC
CAGGTGGCGCGAGGGGCGCGTGGGCATGGGGAGAACGGGGCGAGCGTGCA
AGGGTCATAGGGCGGAGGCGGAAGTCCTGTTAAGTGTGATANGAAGGTAA
TGGTAATCATGGCGAAGCACTCGAGGAGATAACAATGTGGTGATTGAAAG
GGCGATCGCAGCGGCCAGCACGCCGGGCACCCGGCGACAGCCGCCCCCCC
CCCCCCCCCACCAACCCCGCCTCCACCACCGCCCCGAGATCAAATGCGGT
AGGGATGGGAAGGTACGTTCTGCCTTACCAGTTGGTCGCATTAGTCGAGG
AGATCAGACGAGGCAGGATGTCAGAGAGGGAGCGGGAGGGCGGGGAGAAT
GTAGAGAGCAGGACAGTCAACCAACACACAGGGATAGGCCCGCGGTAGCC
AGGCCGCCAGGCGGGTGAGGCGGCGACGGCGCCGCCCCCTCAACGACCCC
GGCACGT
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