EY736379

Overview
NameEY736379
Unique NameEY736379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736379 vs. ExPASy Swiss-Prot
Match: YVOA_BACSU (HTH-type transcriptional repressor yvoA OS=Bacillus subtilis GN=yvoA PE=4 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.912e-12
Identity = 39/95 (41.05%), Postives = 61/95 (64.21%), Query Frame = 1
Query:  352 DKQST-PLYLQLARNLEAAIHAGQWKSEQALPSERALSEQLSISRVTARKALEVLFEQGLIRRSQGSGTFIT-PRLEQPLSRLSGFXEMLRLKGV 630
            +KQS  P+Y Q+   L+  I  G+ + +  LPSER  +EQ  ISR+T R+AL  L  +GL+ R +G GTF++ P++EQ L  L+ F E ++ +G+
Sbjct:    4 NKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVSKPKMEQALQGLTSFTEDMKSRGM 98          
BLAST of EY736379 vs. ExPASy Swiss-Prot
Match: YEGW_SHIFL (Uncharacterized HTH-type transcriptional regulator yegW OS=Shigella flexneri GN=yegW PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.219e-11
Identity = 34/89 (38.20%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  361 STPLYLQLARNLEAAIHAGQWKSEQALPSERALSEQLSISRVTARKALEVLFEQGLIRRSQGSGTFITPRLEQPLSRLSGFXEMLRLKG 627
            +TPLY++ A  ++ A+ +G  +    LP ER LS+   +SR+T RKA++ L E+G++ RS+G GT I    E  L    GF + + L+G
Sbjct:   21 NTPLYIKFAETVKNAVRSGVLEHGNILPGERDLSQLTGVSRITVRKAMQALEEEGVVTRSRGYGTQINNIFEYSLKEARGFSQQVVLRG 109          
BLAST of EY736379 vs. ExPASy Swiss-Prot
Match: YEGW_ECOLI (Uncharacterized HTH-type transcriptional regulator yegW OS=Escherichia coli (strain K12) GN=yegW PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.219e-11
Identity = 34/89 (38.20%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  361 STPLYLQLARNLEAAIHAGQWKSEQALPSERALSEQLSISRVTARKALEVLFEQGLIRRSQGSGTFITPRLEQPLSRLSGFXEMLRLKG 627
            +TPLY++ A  ++ A+ +G  +    LP ER LS+   +SR+T RKA++ L E+G++ RS+G GT I    E  L    GF + + L+G
Sbjct:   21 NTPLYIKFAETVKNAVRSGVLEHGNILPGERDLSQLTGVSRITVRKAMQALEEEGVVTRSRGYGTQINNIFEYSLKEARGFSQQVVLRG 109          
BLAST of EY736379 vs. ExPASy Swiss-Prot
Match: YEGW_ECOL6 (Uncharacterized HTH-type transcriptional regulator yegW OS=Escherichia coli O6 GN=yegW PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.219e-11
Identity = 34/89 (38.20%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  361 STPLYLQLARNLEAAIHAGQWKSEQALPSERALSEQLSISRVTARKALEVLFEQGLIRRSQGSGTFITPRLEQPLSRLSGFXEMLRLKG 627
            +TPLY++ A  ++ A+ +G  +    LP ER LS+   +SR+T RKA++ L E+G++ RS+G GT I    E  L    GF + + L+G
Sbjct:   21 NTPLYIKFAETVKNAVRSGVLEHGNILPGERDLSQLTGVSRITVRKAMQALEEEGVVTRSRGYGTQINNIFEYSLKEARGFSQQVVLRG 109          
BLAST of EY736379 vs. ExPASy Swiss-Prot
Match: YEGW_ECO57 (Uncharacterized HTH-type transcriptional regulator yegW OS=Escherichia coli O157:H7 GN=yegW PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.219e-11
Identity = 34/89 (38.20%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  361 STPLYLQLARNLEAAIHAGQWKSEQALPSERALSEQLSISRVTARKALEVLFEQGLIRRSQGSGTFITPRLEQPLSRLSGFXEMLRLKG 627
            +TPLY++ A  ++ A+ +G  +    LP ER LS+   +SR+T RKA++ L E+G++ RS+G GT I    E  L    GF + + L+G
Sbjct:   21 NTPLYIKFAETVKNAVRSGVLEHGNILPGERDLSQLTGVSRITVRKAMQALEEEGVVTRSRGYGTQINNIFEYSLKEARGFSQQVVLRG 109          
The following BLAST results are available for this feature:
BLAST of EY736379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
YVOA_BACSU2.912e-1241.05HTH-type transcriptional repressor yvoA OS=Bacillu... [more]
YEGW_SHIFL3.219e-1138.20Uncharacterized HTH-type transcriptional regulator... [more]
YEGW_ECOLI3.219e-1138.20Uncharacterized HTH-type transcriptional regulator... [more]
YEGW_ECOL63.219e-1138.20Uncharacterized HTH-type transcriptional regulator... [more]
YEGW_ECO573.219e-1138.20Uncharacterized HTH-type transcriptional regulator... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-015-E11-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736379 ID=EY736379; Name=EY736379; organism=Citrus sinensis; type=EST; length=876bp
ATGCGCGAAGTCTGGAACCTGGTCAAGGACGGCACGATGATCGAGATTCG
TCCGTAATTTTTCCGCCGCTCGTAAAATAATTCAAAAAAAATTCCTGCCC
CGCGCAGCGCTTGCCGGTGAATACCAGTTCACCCCGGCAAGCTGCGCGCT
TCTGCCCGATAGAAAGACCTCTCTAATACCACTTGAATTGGCGCACTATT
AAGGCGCCCGTAAACACTTGCCTGCACCGTTTTCGCTGCATTGACATGGT
ATTTAAGTGGTATTAGCTTGCGATCACTACCGGGCGACAACACTCCAATA
ACCGCATCGGAAACCGACACGATGAACCCCATCCTGGCCCTGCGCCCCGA
CGATAAACAATCGACGCCGCTGTACCTGCAACTGGCCCGTAACCTTGAAG
CCGCGATTCATGCCGGCCAATGGAAATCCGAGCAGGCATTGCCGTCGGAA
CGCGCCCTCAGCGAGCAACTGAGCATTTCCCGAGTGACCGCCCGCAAGGC
GCTGGAAGTGCTGTTCGAGCAAGGCCTGATCCGTCGCAGCCAAGGCTCCG
GAACCTTCATCACTCCGCGCCTGGAACAGCCGCTGTCGCGCCTCTCGGGC
TTCANCGAAATGCTCCGGCTCAAGGGGGTTTGTACCGACGTCCCANTGGC
TCGAGCGCGACATCACCCCGCCGAGCCATGAAAGAGCTGATCCGCCTGGG
CCTGGTCCCGAGTGACNAAGGCGCGCGCCCTCAGCGTTTGGCTTAAGGCC
GACAAACATTGATGGCGATTGGAATTGACCGCTATGCCCGCTTCCGTCCT
CCCCCGACGCGAGGCATTCGGGAACTGCCCCGTGCAAATACTGGAAAAGC
ATCCGCACCCCGCCGACCGCCCCCCC
back to top