EY736377

Overview
NameEY736377
Unique NameEY736377
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736377 vs. ExPASy Swiss-Prot
Match: PORB_PSEAE (Porin B OS=Pseudomonas aeruginosa GN=oprB PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 4.671e-60
Identity = 116/231 (50.22%), Postives = 141/231 (61.04%), Query Frame = 2
Query:    2 AGAARAYDLQTSPYLLGDWGGLRTRLAESGVTLNLGYTGEAAHNFSGG--QDKLTRYTDQWVIGATMDLDKLLGWHGGTFQMTITDRNGRNLG----ADAGIGNNMLIQEVYGRGQTWHMTQFWLNQAFLDNRVQWKIGRLTVGEDFASFSCDFQNLTFCGSQPGNLVGSYWVNWPTSQWATRLKVNTSEQTYVQAGVYQVNPNYVDDGYARRHGLSLDNPNGTTGALTRV 676
            A AA A+    S ++LGDWGG RT L E G    L Y GEAA N  GG   DK  RYTDQ+ +G  MDL+K+LGW    FQ T+T+RNG+NL      D   G+   +QEV+GRGQTW +TQ WL Q + D  +  K GR   GEDF SF CDFQNL FCGSQ GN  GS W NWP SQWA R+K N +   YVQ G Y+ NP+ ++ G    +G  +   +GT GAL  V
Sbjct:   29 AHAAEAFS-PNSKWMLGDWGGKRTELLEKGYDFKLEYVGEAAANLDGGYDDDKTGRYTDQFALGVHMDLEKILGWKATEFQFTVTERNGKNLSNDRIGDPRAGHISSVQEVWGRGQTWRLTQLWLKQQYFDGALDVKFGRFGEGEDFNSFPCDFQNLAFCGSQVGNWAGSIWYNWPVSQWALRVKYNFAPDWYVQVGAYEQNPSNLETG----NGFKMSG-SGTKGALLPV 253          

HSP 2 Score: 28.1054 bits (61), Expect = 4.671e-60
Identity = 12/32 (37.50%), Postives = 16/32 (50.00%), Query Frame = 1
Query:  709 LPGSYKFGAWYNTPDGRDLYRTSTHPPPGKPG 804
            LPG Y+ G +Y+T    D+Y      P G  G
Sbjct:  266 LPGEYRLGYYYSTAKADDVYDDVDGQPQGLTG 297          
BLAST of EY736377 vs. ExPASy Swiss-Prot
Match: QUIX_ACIAD (Putative porin quiX OS=Acinetobacter sp. (strain ADP1) GN=quiX PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 9.333e-42
Identity = 85/224 (37.95%), Postives = 118/224 (52.68%), Query Frame = 2
Query:   29 QTSPYLLGDWGGLRTRLAESGVTLNLGYTGEAAHNFSGGQDKLTRYTD--QWVIGATMDLDKLLGWHGGTFQMTITDRNGRNLGAD-------AGIGNNMLIQEVYGRGQTWHMTQFWLNQAFLDNRVQWKIGRLTVGEDFASFSCDFQNLTFCGSQPGNLVGSYWVNWPTSQWATRLKVNTSEQTYVQAGVYQVNPNYV-----DDGYARRHGLSLDNPNGTT 658
            Q   +LLGDWGG R +L + G         +AA N  GG +      +  Q  +GA  DL K+ GW   T  + IT R+G +L  +         +GN    QE+YGRG+ W +TQ W+ + F DN VQ+KIGR+ + +DF S  C+FQNL  CG Q G  +GS W NWP   W T +K   + +  +  GVY+VNP+ V      DG+     L ++N  G T
Sbjct:   28 QDRQWLLGDWGGERQQLEKQGYKFTASIMSQAATNLDGGYNDSNTLENAGQLTLGANFDLSKIAGWEDTTAAIMITKRDGNSLTLERIKDPRSTTLGNT---QEIYGRGKIWRLTQAWVKKGFNDNTVQFKIGRMGMSDDFNSSQCEFQNLLLCGGQLGKSIGSIWYNWPVGLWGTNVKYQFAPEWTLGLGVYEVNPDNVKTQSNSDGF----NLDMNNVKGAT 244          

HSP 2 Score: 33.8834 bits (76), Expect = 9.333e-42
Identity = 14/25 (56.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:  691 LPAWNGLPGSYKFGAWYNTPDGRDL 765
            L  +NGLPG YK GA Y+T D  D+
Sbjct:  255 LAMFNGLPGEYKVGALYSTADANDV 279          
The following BLAST results are available for this feature:
BLAST of EY736377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PORB_PSEAE4.671e-6050.22Porin B OS=Pseudomonas aeruginosa GN=oprB PE=1 SV=... [more]
QUIX_ACIAD9.333e-4237.95Putative porin quiX OS=Acinetobacter sp. (strain A... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-015-E09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736377 ID=EY736377; Name=EY736377; organism=Citrus sinensis; type=EST; length=875bp
CGCCGGCGCGGCCCGGGCCTACGACCTGCAGACCAGCCCCTACCTGCTGG
GCGACTGGGGCGGCCTGCGCACCCGCCTGGCCGAAAGCGGCGTGACCCTG
AACCTGGGCTACACCGGCGAGGCCGCGCACAACTTCAGCGGCGGCCAGGA
CAAGCTGACGCGCTACACCGACCAGTGGGTCATCGGCGCCACGATGGACC
TGGACAAGCTGCTCGGCTGGCATGGCGGCACGTTCCAGATGACCATCACC
GACCGCAACGGCCGCAACCTGGGCGCCGACGCCGGCATCGGCAACAACAT
GCTGATCCAGGAGGTCTACGGCCGCGGCCAGACCTGGCACATGACGCAGT
TCTGGTTGAACCAGGCCTTCCTGGACAACCGGGTGCAGTGGAAGATCGGC
CGCCTCACCGTGGGCGAGGACTTCGCCAGCTTTTCCTGCGACTTCCAGAA
CCTGACCTTCTGCGGCTCGCAGCCCGGCAACCTGGTGGGCAGCTACTGGG
TCAACTGGCCGACCAGCCAGTGGGCCACGCGCCTGAAGGTCAACACGTCC
GAGCAGACCTACGTGCAGGCGGGCGTCTATCAGGTCAATCCCAACTACGT
GGACGACGGCTACGCGCGCCGCCACGGCCTGTCGCTGGACAATCCCAACG
GCACCACCGGCGCGCTGACCCGGGTGGGAAGTCNGGCTGGCTGCCGGCCT
GGAACGGGCTGCCTGGCTCGTACAAGTTCGGCGCCTGGTACAACACTCCC
GACGGCAGGGACCTGTACAGGACATCAACCCACCCGCCGCCGGGGAAACC
GGGCTGGCACCGCGCGACCGCAACGGCCATTTTGGTTCCTATCTCACTTC
GAGCACNAGTCAGCGGCACCCCCGG
back to top