EY736370

Overview
NameEY736370
Unique NameEY736370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736370 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.267e-46
Identity = 70/106 (66.04%), Postives = 82/106 (77.36%), Query Frame = 1
Query:  220 LDLKKFETLSYLPPLSHEALLKEINYLIRSCWIPCLEFEWEKRWVYREHHKSPRYYDGRYWTTWKLPMYGCTDATHVLKEVGDVHKGIPLAFVGSIRCDD--SVRC 531
            + LKK+ETLSYLPPLS EAL KEI+YLIR+ WIPCLEFE E  +VYREHH SP YYDGRYWT WKLPM+GCTD+  V+KEVG+  K  P AF+  I  D+   V+C
Sbjct:   64 IGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQC 169          

HSP 2 Score: 59.3066 bits (142), Expect = 2.267e-46
Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 3
Query:   66 NRASLAHANVVAPCTVLMSSSAFPATMNTNNDMTSIANNG*RVQ*MKVWSPSGLEK 233
            NR +   A++ AP T L S+ AFP T   NND +S+ +NG RVQ MKVW P GL+K
Sbjct:   13 NRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKK 68          
BLAST of EY736370 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 5.017e-46
Identity = 63/100 (63.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query:  220 LDLKKFETLSYLPPLSHEALLKEINYLIRSCWIPCLEFEWEKRWVYREHHKSPRYYDGRYWTTWKLPMYGCTDATHVLKEVGDVHKGIPLAFVGSIRCDD 519
            L LKKFETLSYLPPLS E L KE++YL+R   IPCLEFE E  +VYREH++SP YYDGRYWT WKLPM+GC D++ VLKE+ +  K  P AF+  I  D+
Sbjct:   66 LGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDN 165          

HSP 2 Score: 70.0922 bits (170), Expect = 5.017e-46
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 3
Query:   66 NRASLAHANVVAPCTVLMSSSAFPATMNTNNDMTSIANNG*RVQ*MKVWSPSGLEK 233
            +RAS A +++VAP T L S+SAFP T  TNND+TSIA+NG RVQ M+VW P GL+K
Sbjct:   15 SRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKK 70          
BLAST of EY736370 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.665e-44
Identity = 65/106 (61.32%), Postives = 82/106 (77.36%), Query Frame = 1
Query:  220 LDLKKFETLSYLPPLSHEALLKEINYLIRSCWIPCLEFEWEKRWVYREHHKSPRYYDGRYWTTWKLPMYGCTDATHVLKEVGDVHKGIPLAFVGSIRCDD--SVRC 531
            L LKKFETLSYLPPLS E+L KE++YL+R  W+PCLEFE E  +VYRE+H+SP YYDGRYWT WKLPM+GCTD++ VLKE+ +  K  P +F+  I  D+   V+C
Sbjct:   67 LGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQC 172          

HSP 2 Score: 57.3806 bits (137), Expect = 2.665e-44
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 3
Query:   66 NRASLAHANVVAPCTVLMSSSAFPATMNTNNDMTSIANNG*RVQ*MKVWSPSGLEK 233
            +R + A A +VAP   L SSSAFP T  +N D+TSIA+NG RVQ M+VW P GL+K
Sbjct:   17 DRPAPAQARMVAPFNGLKSSSAFPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKK 71          
BLAST of EY736370 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.899e-44
Identity = 63/106 (59.43%), Postives = 77/106 (72.64%), Query Frame = 1
Query:  220 LDLKKFETLSYLPPLSHEALLKEINYLIRSCWIPCLEFEWEKRWVYREHHKSPRYYDGRYWTTWKLPMYGCTDATHVLKEVGDVHKGIPLAFVGSIRCDD--SVRC 531
            L L+KFETLSYLPPLS E+L K+I YLI   WIPCLEFE E  +VYRE+++SP YYDGRYW  WKLPM+GCTDAT VL E+ +  K  P + +  I  D+   V+C
Sbjct:   66 LGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQC 171          

HSP 2 Score: 68.5514 bits (166), Expect = 5.899e-44
Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = 3
Query:   66 NRASLAHANVVAPCTVLMSSSAFPATMNTNNDMTSIANNG*RVQ*MKVWSPSGLEK 233
            +RA+ A A +VAP T L S++AFPAT  +NND+TS+A+NG RVQ MKVW P GL+K
Sbjct:   15 SRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQK 70          
BLAST of EY736370 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 7.687e-44
Identity = 65/106 (61.32%), Postives = 82/106 (77.36%), Query Frame = 1
Query:  220 LDLKKFETLSYLPPLSHEALLKEINYLIRSCWIPCLEFEWEKRWVYREHHKSPRYYDGRYWTTWKLPMYGCTDATHVLKEVGDVHKGIPLAFVGSIRCDD--SVRC 531
            L LKKFETLSYLPPLS E+L KE++YL+R  W+PCLEFE E  +VYRE+H+SP YYDGRYWT WKLPM+GCTD++ VLKE+ +  K  P +F+  I  D+   V+C
Sbjct:   67 LGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQC 172          

HSP 2 Score: 56.225 bits (134), Expect = 7.687e-44
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 3
Query:   66 NRASLAHANVVAPCTVLMSSSAFPATMNTNNDMTSIANNG*RVQ*MKVWSPSGLEK 233
            +R + A A +VAP T L SSSA P T  +N D+TSIA+NG RVQ M+VW P GL+K
Sbjct:   17 DRPAPAQARMVAPFTGLKSSSASPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKK 71          
BLAST of EY736370 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.890e-43
Identity = 66/106 (62.26%), Postives = 79/106 (74.53%), Query Frame = 1
Query:  220 LDLKKFETLSYLPPLSHEALLKEINYLIRSCWIPCLEFEWEKRWVYREHHKSPRYYDGRYWTTWKLPMYGCTDATHVLKEVGDVHKGIPLAFVGSIRCDD--SVRC 531
            ++ KK+ETLSYLP LS E LL EI YL++S W+PCLEFE E+ +VYREHH SP YYDGRYWT WKLPM+GCTDAT VL EV +  K  P A+V  I  D+   V+C
Sbjct:   64 INKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQC 169          

HSP 2 Score: 56.6102 bits (135), Expect = 2.890e-43
Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 3
Query:   69 RASLAHANVVAPCTVLMSSSAFPATMNTNNDMTSIANNG*RVQ*MKVWSPSGLEK 233
            R+++A AN+VAP T L S+++FP +   N D+TSIA+NG RVQ M+VW P   +K
Sbjct:   14 RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKK 68          
BLAST of EY736370 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.415e-42
Identity = 64/106 (60.38%), Postives = 81/106 (76.42%), Query Frame = 1
Query:  220 LDLKKFETLSYLPPLSHEALLKEINYLIRSCWIPCLEFEWEKRWVYREHHKSPRYYDGRYWTTWKLPMYGCTDATHVLKEVGDVHKGIPLAFVGSIRCDD--SVRC 531
            +++KK+ETLSYLP LS E LLKE+ YL+++ W+PCLEFE E  +VYRE+HKSP YYDGRYWT WKLPM+GCTDAT VL EV +  K  P A++  I  D+   V+C
Sbjct:   65 INMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQC 170          

HSP 2 Score: 54.6842 bits (130), Expect = 1.415e-42
Identity = 27/56 (48.21%), Postives = 42/56 (75.00%), Query Frame = 3
Query:   69 RASLAHANVVAPCTVLMSSSAFPATMNTNN-DMTSIANNG*RVQ*MKVWSPSGLEK 233
            R+++A A++VAP T L S+++FP T   NN D+TS+A+NG RV+ M+VW P  ++K
Sbjct:   14 RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKK 69          
BLAST of EY736370 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 4.079e-42
Identity = 60/100 (60.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:  229 KKFETLSYLPPLSHEALLKEINYLIRSCWIPCLEFEWEKRWVYREHHKSPRYYDGRYWTTWKLPMYGCTDATHVLKEVGDVHKGIPLAFVGSIRCDDSVR 528
            K +ETLSYLPPL+ E L KE+ YL+R  W+PCLEFE E   VYRE+H+SP YYDGRYWT WKLPM+GCTDA  VL+E+ ++ K  P  + G I   D+VR
Sbjct:   69 KFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKAYPDCY-GRIIGFDNVR 167          

HSP 2 Score: 63.929 bits (154), Expect = 4.079e-42
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 3
Query:   66 NRASLAHANVVAPCTVLMSSSAFPATMNTNNDMTSIANNG*RVQ*MKVWSPSG 224
            NRAS A A++VAP T L S+SAFP T  T  D+TSIA+NG RVQ M+VW P G
Sbjct:   15 NRASPAQASMVAPFTGLKSTSAFPTTRKTTTDITSIASNGGRVQCMQVWPPRG 67          
BLAST of EY736370 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.533e-41
Identity = 64/106 (60.38%), Postives = 80/106 (75.47%), Query Frame = 1
Query:  220 LDLKKFETLSYLPPLSHEALLKEINYLIRSCWIPCLEFEWEKRWVYREHHKSPRYYDGRYWTTWKLPMYGCTDATHVLKEVGDVHKGIPLAFVGSIRCDD--SVRC 531
            +++KK+ETLSYLP LS E LL EI YL+++ W+PCLEFE E  +VYRE++KSP YYDGRYWT WKLPM+GCTDAT VL EV +  K  P A+V  I  D+   V+C
Sbjct:   64 INMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQC 169          

HSP 2 Score: 55.0694 bits (131), Expect = 1.533e-41
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 3
Query:   69 RASLAHANVVAPCTVLMSSSAFPATMNTNNDMTSIANNG*RVQ*MKVWSPSGLEK 233
            R+++  A++VAP T L SS+ FP T   N D+TSIA+NG RV  M+VW P  ++K
Sbjct:   14 RSNVTQASMVAPFTGLKSSATFPVTKKQNLDITSIASNGGRVSCMQVWPPINMKK 68          
BLAST of EY736370 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.998e-41
Identity = 65/106 (61.32%), Postives = 80/106 (75.47%), Query Frame = 1
Query:  220 LDLKKFETLSYLPPLSHEALLKEINYLIRSCWIPCLEFEWEKRWVYREHHKSPRYYDGRYWTTWKLPMYGCTDATHVLKEVGDVHKGIPLAFVGSIRCDD--SVRC 531
            +++KK+ETLSYLP LS E LL EI YL+++ W+PCLEFE E  +VYRE+HKSP YYDGRYWT WKLPM+GCTDAT VL EV +  K  P A+V  I  D+   V+C
Sbjct:   64 INMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQC 169          

HSP 2 Score: 51.9878 bits (123), Expect = 1.998e-41
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 3
Query:   69 RASLAHANVVAPCTVLMSSSAFPATMNTNNDMTSIANNG*RVQ*MKVWSPSGLEK 233
            R + A A++VAP T L S+++FP +   N D+TSIA+NG RV  M+VW P  ++K
Sbjct:   14 RGNGAQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVSCMQVWPPINMKK 68          
The following BLAST results are available for this feature:
BLAST of EY736370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
RBS_LACSA2.267e-4666.04Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE5.017e-4663.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY2.665e-4461.32Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FAGCR5.899e-4459.43Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP7.687e-4461.32Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS8_NICPL2.890e-4362.26Ribulose bisphosphate carboxylase small chain 8B, ... [more]
RBS3_SOLTU1.415e-4260.38Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_HEVBR4.079e-4260.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2A_SOLLC1.533e-4160.38Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS3B_SOLLC1.998e-4161.32Ribulose bisphosphate carboxylase small chain 3B, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-015-E01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736370 ID=EY736370; Name=EY736370; organism=Citrus sinensis; type=EST; length=865bp
CGACCCACGCGTCCGAAGTACCAGTGGCTTCCGCTATGATCTCATCGGCC
ACCGCTGCCATCGCTAACCGCGCCAGCCTTGCTCATGCCAACGTGGTCGC
CCCCTGCACCGTACTCATGTCTTCTTCTGCTTTCCCAGCAACCATGAACA
CCAACAATGACATGACTTCCATTGCAAACAACGGATGAAGAGTCCAATGA
ATGAAAGTGTGGTCACCATCTGGACTTGAAAAAGTTCGAGACTCTCTCAT
ATCTCCCGCCACTGTCCCATGAAGCGTTGCTCAAGGAAATCAATTACCTT
ATCCGCTCCTGCTGGATACCATGCTTGGAATTCGAGTGGGAAAAAAGATG
GGTGTACCGTGAGCACCACAAGTCACCAAGATACTACGATGGACGCTACT
GGACAACGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCACGTT
TTGAAAGAGGTTGGGGACGTCCACAAAGGAATACCACTTGCATTCGTCGG
AAGTATCCGATGTGACGACAGCGTCCGGTGCCGAGCATTATTTCATCGTT
GTCTAACCACCAACCTTTAGGTTCCAATTAACTTTGTGTACCCCCCAGGC
ACTTTCTGGAGAGTAGGGCGTGGTACCCCCACCCTCATCACCAAACAGCG
GGGTTCAGCTGCCTTCAGCTCAGAGCCCCCCCCGAGTGTAGCCGGTCCCC
CAAGTCTCCACGTGTCGGCGGGGGTGTCGGGGTGGGGCGCCGCACGGGGA
GTATGTGGCAGCCTCGCGGAGACGACGGAGCAGAGGGGGCGGCCCCGATG
TGGGCGAGCCGCCGCGCGCGGGGGGGCGCTCGCCGCGCCGGCGGGCGCGC
CGCCGCGGTGGGGCG
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