EY736347

Overview
NameEY736347
Unique NameEY736347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736347 vs. ExPASy Swiss-Prot
Match: AB8I_ARATH (UPF0051 protein ABCI8, chloroplastic OS=Arabidopsis thaliana GN=ABCI8 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.683e-23
Identity = 49/69 (71.01%), Postives = 58/69 (84.06%), Query Frame = 2
Query:  242 DIDSVTIPKGLTKETIHLISSVKEEPAWMLEYRLSAFEKCLKMKEPNWSDNRYPPMNCQDMCHYSAPKK 448
            DIDS TIPKGL++ETI LIS +KEEP WMLE+R  A+ K LK++EP WSDNRYP +N QDMC+YSAPKK
Sbjct:   99 DIDSFTIPKGLSEETIRLISKLKEEPDWMLEFRFKAYAKFLKLEEPKWSDNRYPSINFQDMCYYSAPKK 167          

HSP 2 Score: 71.2478 bits (173), Expect = 8.664e-12
Identity = 62/190 (32.63%), Postives = 87/190 (45.79%), Query Frame = 1
Query:    7 SAKTLERVHPKLENPKFIVPKSSR----LFKVRADVGYXXXXXXXXXXXXXXXXXXTTQSSDDKIQEILRNRDYDKKFXXXXXXXXXXDPKRPHERNDSFDFFCKRRTRLDA*V*IECL*EMS*NERTQLV**SIPANELPRYVSL----LC----TQKEPT*DSLDEADPELIRYVDKLGVPLNEQNRM 540
            S+K+ +  HPK E+ KF  PKS      +FK+RADVG                   +T SS DK+Q+  +N DYDKK+           PK   E  ++     K +   D       + E       + +    P     RY S+    +C     +K+PT +SLDE DP+L+ Y DKLGVPL EQ R+
Sbjct:   20 SSKSPKGFHPKPESLKFPSPKSLNPTRPIFKLRADVGIDSRPIGASESSSSGT---STVSSTDKLQQYFQNLDYDKKYGFVEDIDSFTIPKGLSE--ETIRLISKLKEEPD------WMLEFRFKAYAKFLKLEEPKWSDNRYPSINFQDMCYYSAPKKKPTLNSLDEVDPQLLEYFDKLGVPLTEQKRL 198          
BLAST of EY736347 vs. ExPASy Swiss-Prot
Match: AB9I_ARATH (Putative UPF0051 protein ABCI9 OS=Arabidopsis thaliana GN=ABCI9 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.091e-22
Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 2
Query:  242 DIDSVTIPKGLTKETIHLISSVKEEPAWMLEYRLSAFEKCLKMKEPNWSDNRYPPMNCQDMCHYSAPKK 448
            +IDS TIPKGL++ETI LIS +K+EPAW+LEYRL A+ K LK++EP WSDNRYP ++ QDMC YSAPKK
Sbjct:   80 NIDSFTIPKGLSEETIRLISKLKKEPAWILEYRLKAYAKFLKLEEPKWSDNRYPLLDLQDMCFYSAPKK 148          
BLAST of EY736347 vs. ExPASy Swiss-Prot
Match: YCF24_CYAPA (UPF0051 protein ycf24 OS=Cyanophora paradoxa GN=ycf24 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.302e-18
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 2
Query:  257 TIPKGLTKETIHLISSVKEEPAWMLEYRLSAFEKCLKM-KEPNWSDNRYPPMNCQDMCHYSAPKKNR 454
            TI KGLT+ETI LIS  K EP +MLE+RL A+ K L+M  EP W+   YP +N QDM +YSAPK+ +
Sbjct:   32 TISKGLTEETIRLISEKKNEPQFMLEFRLQAYRKWLEMSNEPEWAHLNYPKINYQDMVYYSAPKQKK 98          

HSP 2 Score: 36.1946 bits (82), Expect = 2.302e-18
Identity = 15/26 (57.69%), Postives = 19/26 (73.08%), Query Frame = 1
Query:  463 SLDEADPELIRYVDKLGVPLNEQNRM 540
            SLDE DP L+   +KLG+PL EQ R+
Sbjct:  102 SLDEVDPTLLETFEKLGIPLTEQKRL 127          
BLAST of EY736347 vs. ExPASy Swiss-Prot
Match: Y074_SYNY3 (UPF0051 protein slr0074 OS=Synechocystis sp. (strain PCC 6803) GN=slr0074 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.446e-17
Identity = 31/74 (41.89%), Postives = 53/74 (71.62%), Query Frame = 2
Query:  242 DIDSVTIPKGLTKETIHLISSVKEEPAWMLEYRLSAFEKCLKMKEPNWSDNRYPPMNCQDMCHYSAPKKNRLEI 463
            +I++  IP+GL+++ + LIS+ K EP +ML++RL A+   L M EP W    YPP++ QD+ +YSAPK+++ ++
Sbjct:   21 NIEADAIPRGLSEDVVRLISAKKNEPEFMLDFRLRAYRHWLTMAEPTWPAVHYPPIDYQDIIYYSAPKQSKKKL 94          

HSP 2 Score: 37.3502 bits (85), Expect = 1.446e-17
Identity = 15/27 (55.56%), Postives = 21/27 (77.78%), Query Frame = 1
Query:  460 DSLDEADPELIRYVDKLGVPLNEQNRM 540
            +SLDE DP L+   +KLG+PL+EQ R+
Sbjct:   95 ESLDEVDPALLETFEKLGIPLSEQKRL 121          
BLAST of EY736347 vs. ExPASy Swiss-Prot
Match: YCF24_PORPU (UPF0051 protein ycf24 OS=Porphyra purpurea GN=ycf24 PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 2.225e-14
Identity = 25/67 (37.31%), Postives = 44/67 (65.67%), Query Frame = 2
Query:  245 IDSVTIPKGLTKETIHLISSVKEEPAWMLEYRLSAFEKCLKMKEPNWSDNRYPPMNCQDMCHYSAPK 445
            ++S   P+G+++E + LIS  K EP ++L +RL A+EK  KMK P W+  ++P ++   + +Y+ PK
Sbjct:   30 VESEQFPRGISREVVKLISKKKNEPEYLLNFRLKAYEKWTKMKNPKWAHLKHPNIDFNSIIYYAVPK 96          

HSP 2 Score: 36.1946 bits (82), Expect = 2.225e-14
Identity = 15/27 (55.56%), Postives = 21/27 (77.78%), Query Frame = 1
Query:  460 DSLDEADPELIRYVDKLGVPLNEQNRM 540
            +SLDE DPE++   +KLG+ LNEQ R+
Sbjct:  102 NSLDEVDPEILDTFNKLGISLNEQKRL 128          
BLAST of EY736347 vs. ExPASy Swiss-Prot
Match: YCF24_ODOSI (UPF0051 protein ycf24 OS=Odontella sinensis GN=ycf24 PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.225e-14
Identity = 30/67 (44.78%), Postives = 46/67 (68.66%), Query Frame = 2
Query:  245 IDSVTIPKGLTKETIHLISSVKEEPAWMLEYRLSAFEKCLKMKEPNWSDNRYPPMNCQDMCHYSAPK 445
            I+   I KGL ++ I LIS  K EP ++LE+RL AF+K  +MK P+W+  ++  ++ QD+ +YSAPK
Sbjct:   29 IEKDIIEKGLNEDVICLISKKKNEPKFLLEFRLKAFKKWKEMKCPDWAQIKFSEIDYQDIIYYSAPK 95          

HSP 2 Score: 36.5798 bits (83), Expect = 2.225e-14
Identity = 15/27 (55.56%), Postives = 21/27 (77.78%), Query Frame = 1
Query:  460 DSLDEADPELIRYVDKLGVPLNEQNRM 540
            +SLDE DPEL++  +KLG+ L EQ R+
Sbjct:  101 NSLDEVDPELLKTFEKLGISLTEQKRL 127          
The following BLAST results are available for this feature:
BLAST of EY736347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
AB8I_ARATH1.683e-2371.01UPF0051 protein ABCI8, chloroplastic OS=Arabidopsi... [more]
AB9I_ARATH1.091e-2269.57Putative UPF0051 protein ABCI9 OS=Arabidopsis thal... [more]
YCF24_CYAPA2.302e-1856.72UPF0051 protein ycf24 OS=Cyanophora paradoxa GN=yc... [more]
Y074_SYNY31.446e-1741.89UPF0051 protein slr0074 OS=Synechocystis sp. (stra... [more]
YCF24_PORPU2.225e-1437.31UPF0051 protein ycf24 OS=Porphyra purpurea GN=ycf2... [more]
YCF24_ODOSI2.225e-1444.78UPF0051 protein ycf24 OS=Odontella sinensis GN=ycf... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-015-C01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736347 ID=EY736347; Name=EY736347; organism=Citrus sinensis; type=EST; length=889bp
CACGCGTCCGCCAAAACTCTCGAAAGGGTTCACCCAAAGCTCGAAAATCC
CAAGTTCATAGTCCCCAAAAGCTCAAGGCTCTTCAAGGTCCGTGCGGATG
TCGGGTACGGGTCAAGCACCATCAGCTCCGACCCTAGCTCTTCGCCAGGT
AATTTGTCAACTACTACCCAGAGCTCCGATGATAAAATTCAAGAAATTTT
ACGCAATCGTGATTACGATAAGAAATTCGGCTTGTAATTGGGATATTGAC
TCGGTTACGATCCCAAAAGGCCTCACGAAAGAAACGATTCATTTGATTTC
TTCTGTAAAAGAAGAACCCGCCTGGATGCTTGAGTATAGATTGAGTGCCT
TTGAGAAATGTCTTAAAATGAAAGAACCCAATTGGTCTGATAATCGATAC
CCGCCAATGAATTGCCAAGATATGTGTCATTACTCTGCACCCAAAAAGAA
CCGACTTGAGATAGCCTTGATGAGGCCGATCCAGAGCTGATTAGGTATGT
TGATAAACTGGGTGTGCCTTTAAATGAACAGAATCGGATGGGCCAATGTG
GCAGTGGATGCAAGCGGCTAGAAGAGTGTCCTGATGGCGCGGGGCCATGG
GAAGAATCGTGCAGGAGGGGGGGGGTCATTTGCCGTTGCAATATCAAAAC
CTGGTCCGGGGCGCCTCGGCGGTGTAGTGGGGGAAGGTTTTCGGGGGGGG
TTGGTGCGCTTTGGAGGAGGTATGCTGTTGGGGAGACGGAATGCGTGGGG
GGTGGAAGGTATGGGATGGTGACTTGAGAGTGCGGCGACACAGTCGGGGG
GGTCCGGGGGGCGGGGGTGGGGAGGCTGGTTGGGCGTGGGGGGGGGGGGA
GGGGGGGGCGGGGGGGGAGAGGATGGGGGAGGGGGTGGG
back to top