EY736329

Overview
NameEY736329
Unique NameEY736329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736329 vs. ExPASy Swiss-Prot
Match: CBWD2_HUMAN (COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.019e-30
Identity = 70/158 (44.30%), Postives = 106/158 (67.09%), Query Frame = 3
Query:    6 VRGRVG-GKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAKTTGA--EDIVLLNNGCLCCTVRGDLVRMISELVSKKKGKFDHIVIETTRLANPAPIIQTFDAEDAIFNEVKLDGVVTLVDAKHAGVHLDEVKPVGLVPDAVEQIACADRIILH 470
            + G +G GKTTLLN+ILT +H KR+AVI NE+GE       +A    G   E+ + L NGCLCC+V+ + +R I  L+ +KKGKFD+I++ETT LA+P  +   F  +  + +++ LDG++T+VD+K+   HL E KP GL+ +A  Q+A AD I+++
Sbjct:   47 ITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLM-QKKGKFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLAEEKPDGLINEATRQVALADAILIN 203          
BLAST of EY736329 vs. ExPASy Swiss-Prot
Match: CBWD1_HUMAN (COBW domain-containing protein 1 OS=Homo sapiens GN=CBWD1 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.019e-30
Identity = 70/158 (44.30%), Postives = 105/158 (66.46%), Query Frame = 3
Query:    6 VRGRVG-GKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAKTTGA--EDIVLLNNGCLCCTVRGDLVRMISELVSKKKGKFDHIVIETTRLANPAPIIQTFDAEDAIFNEVKLDGVVTLVDAKHAGVHLDEVKPVGLVPDAVEQIACADRIILH 470
            + G +G GKTTLLN+ILT +H KR+AVI NE+GE       +A    G   E+ + L NGCLCC+V+   +R I  L+ +KKGKFD+I++ETT LA+P  +   F  +  + +++ LDG++T+VD+K+   HL E KP GL+ +A  Q+A AD I+++
Sbjct:   47 ITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLM-QKKGKFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADAILIN 203          
BLAST of EY736329 vs. ExPASy Swiss-Prot
Match: CBWD1_MOUSE (COBW domain-containing protein 1 OS=Mus musculus GN=Cbwd1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.786e-29
Identity = 71/158 (44.94%), Postives = 105/158 (66.46%), Query Frame = 3
Query:    6 VRGRVG-GKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAKTTGA--EDIVLLNNGCLCCTVRGDLVRMISELVSKKKGKFDHIVIETTRLANPAPIIQTFDAEDAIFNEVKLDGVVTLVDAKHAGVHLDEVKPVGLVPDAVEQIACADRIILH 470
            V G +G GKTTLLN+ILT +H ++IAVI NE+GE       +A    G   E+ + L NGCLCC+V+   +R I  L+ +KKGKFD+I++ETT LA+P  +   F  +  + +++ LDG++T+VD+K+   HL E KP GLV +A  Q+A AD I+++
Sbjct:   45 VTGYLGAGKTTLLNYILTEQHNRKIAVILNEFGEGSAVEKSLAVSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLM-QKKGKFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITVVDSKYGLKHLTEEKPDGLVNEATRQVALADMILIN 201          
BLAST of EY736329 vs. ExPASy Swiss-Prot
Match: CBWD1_RAT (COBW domain-containing protein 1 OS=Rattus norvegicus GN=Cbwd1 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.047e-29
Identity = 70/158 (44.30%), Postives = 106/158 (67.09%), Query Frame = 3
Query:    6 VRGRVG-GKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAKTTGA--EDIVLLNNGCLCCTVRGDLVRMISELVSKKKGKFDHIVIETTRLANPAPIIQTFDAEDAIFNEVKLDGVVTLVDAKHAGVHLDEVKPVGLVPDAVEQIACADRIILH 470
            V G +G GKTTLLN+ILT +H ++IAVI NE+GE       +A    G   E+ + L NGCLCC+V+ + ++ I  L+ +KKGKFD+I++ETT LA+P  +   F  +  + +++ LDG++T+VD+K+   HL E KP GLV +A  Q+A AD I+++
Sbjct:   46 VTGYLGAGKTTLLNYILTEQHNRKIAVILNEFGEGSAVEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLKAIENLM-QKKGKFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITVVDSKYGLKHLTEEKPDGLVNEATRQVALADMILIN 202          
BLAST of EY736329 vs. ExPASy Swiss-Prot
Match: CBWD6_HUMAN (COBW domain-containing protein 6 OS=Homo sapiens GN=CBWD6 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.866e-29
Identity = 70/158 (44.30%), Postives = 104/158 (65.82%), Query Frame = 3
Query:    6 VRGRVG-GKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAKTTGA--EDIVLLNNGCLCCTVRGDLVRMISELVSKKKGKFDHIVIETTRLANPAPIIQTFDAEDAIFNEVKLDGVVTLVDAKHAGVHLDEVKPVGLVPDAVEQIACADRIILH 470
            + G +G GKTTLLN+ILT +H KR+AVI NE GE       +A    G   E+ + L NGCLCC+V+ + +R I  L+ +KKGKFD I++ETT LA+P  +   F  +  + +++ LDG++T+VD+K+   HL E KP GL+ +A  Q+A AD I+++
Sbjct:   47 ITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLM-QKKGKFDDILLETTGLADPGAVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILIN 203          
BLAST of EY736329 vs. ExPASy Swiss-Prot
Match: CBWD5_HUMAN (COBW domain-containing protein 5 OS=Homo sapiens GN=CBWD5 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.866e-29
Identity = 70/158 (44.30%), Postives = 104/158 (65.82%), Query Frame = 3
Query:    6 VRGRVG-GKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAKTTGA--EDIVLLNNGCLCCTVRGDLVRMISELVSKKKGKFDHIVIETTRLANPAPIIQTFDAEDAIFNEVKLDGVVTLVDAKHAGVHLDEVKPVGLVPDAVEQIACADRIILH 470
            + G +G GKTTLLN+ILT +H KR+AVI NE GE       +A    G   E+ + L NGCLCC+V+ + +R I  L+ +KKGKFD I++ETT LA+P  +   F  +  + +++ LDG++T+VD+K+   HL E KP GL+ +A  Q+A AD I+++
Sbjct:   47 ITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLM-QKKGKFDDILLETTGLADPGAVTSMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILIN 203          
BLAST of EY736329 vs. ExPASy Swiss-Prot
Match: CBWD3_HUMAN (COBW domain-containing protein 3 OS=Homo sapiens GN=CBWD3 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.866e-29
Identity = 70/158 (44.30%), Postives = 104/158 (65.82%), Query Frame = 3
Query:    6 VRGRVG-GKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAKTTGA--EDIVLLNNGCLCCTVRGDLVRMISELVSKKKGKFDHIVIETTRLANPAPIIQTFDAEDAIFNEVKLDGVVTLVDAKHAGVHLDEVKPVGLVPDAVEQIACADRIILH 470
            + G +G GKTTLLN+ILT +H KR+AVI NE GE       +A    G   E+ + L NGCLCC+V+ + +R I  L+ +KKGKFD I++ETT LA+P  +   F  +  + +++ LDG++T+VD+K+   HL E KP GL+ +A  Q+A AD I+++
Sbjct:   47 ITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLM-QKKGKFDDILLETTGLADPGAVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILIN 203          
BLAST of EY736329 vs. ExPASy Swiss-Prot
Match: YOG5_SCHPO (COBW domain-containing protein C15D4.05 OS=Schizosaccharomyces pombe GN=SPBC15D4.05 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.025e-26
Identity = 66/154 (42.86%), Postives = 105/154 (68.18%), Query Frame = 3
Query:   24 GKTTLLNHILTAEHGKRIAVIENEYGEV-DIDGSLVAAKTTGAEDI----VLLNNGCLCCTVRGDLVRMISELVSKKKGKFDHIVIETTRLANPAPIIQTFDAEDAIFNEVKLDGVVTLVDAKHAGVHLDEVKPVGLVPDAVEQIACADRIILH 470
            GKT+LL  IL   +GKR+AV+ NE G+  D++ SL+  +  G E++    V L+NGC+CCTV+ + ++ + E + ++KG+FD+IVIETT +ANP P+ QTF  +DA+ ++VKLDG+VT++D K+    L +   +G +     QI+ AD +IL+
Sbjct:   73 GKTSLLRSILENRNGKRVAVLMNEVGDSGDLERSLM--EDVGGEELYEEWVALSNGCMCCTVKDNGIKAL-EKIMRQKGRFDNIVIETTGIANPGPLAQTFWLDDALKSDVKLDGIVTVIDCKNIDNILKDESDIGFI-----QISHADCLILN 218          
BLAST of EY736329 vs. ExPASy Swiss-Prot
Match: YJIA_ECOLI (Uncharacterized GTP-binding protein yjiA OS=Escherichia coli (strain K12) GN=yjiA PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 3.486e-25
Identity = 65/151 (43.05%), Postives = 90/151 (59.60%), Query Frame = 3
Query:   24 GKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAKTTGAEDIVLLNNGCLCCTVRGDLVRMISEL---VSKKKGKFDHIVIETTRLANPAPIIQTFDAEDAIFNEVKLDGVVTLVDAKHAGVHLDEVKPVGLVPDAVEQIACADRIIL 467
            GKTTLL HIL  +HG +IAVIENE+GEV +D  L+  + T    I  L NGC+CC+   +L   + +L   + K   +FD +VIE T +A+P PIIQTF + + +     LDGV+ LVDA HA   +++         A  Q+  ADRI+L
Sbjct:   16 GKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRAT---QIKTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQ------FTIAQSQVGYADRILL 157          
BLAST of EY736329 vs. ExPASy Swiss-Prot
Match: COBW_PSEDE (Protein cobW OS=Pseudomonas denitrificans GN=cobW PE=3 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 3.377e-20
Identity = 51/120 (42.50%), Postives = 83/120 (69.17%), Query Frame = 3
Query:   24 GKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLV---AAKTTGAEDIVLLNNGCLCCTVRGDLVRMISELVSKKKGKFDHIVIETTRLANPAPIIQTFDAEDAIFNEVKLDGVVTLVDA 374
            GKTT++ ++L    GKRI +I NE+G++ +DG ++    A+    +DI+ L NGC+CCTV  D +  +++L+ +++ + DHI+IET+ LA P P+I  F+  D I +EV +DGVVT+VD+
Sbjct:   23 GKTTMIRNLLQNADGKRIGLIINEFGDLGVDGDVLKGCGAEACTEDDIIELTNGCICCTVADDFIPTMTKLL-ERENRPDHIIIETSGLALPQPLIAAFNWPD-IRSEVTVDGVVTVVDS 140          
The following BLAST results are available for this feature:
BLAST of EY736329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CBWD2_HUMAN8.019e-3044.30COBW domain-containing protein 2 OS=Homo sapiens G... [more]
CBWD1_HUMAN8.019e-3044.30COBW domain-containing protein 1 OS=Homo sapiens G... [more]
CBWD1_MOUSE1.786e-2944.94COBW domain-containing protein 1 OS=Mus musculus G... [more]
CBWD1_RAT3.047e-2944.30COBW domain-containing protein 1 OS=Rattus norvegi... [more]
CBWD6_HUMAN8.866e-2944.30COBW domain-containing protein 6 OS=Homo sapiens G... [more]
CBWD5_HUMAN8.866e-2944.30COBW domain-containing protein 5 OS=Homo sapiens G... [more]
CBWD3_HUMAN8.866e-2944.30COBW domain-containing protein 3 OS=Homo sapiens G... [more]
YOG5_SCHPO7.025e-2642.86COBW domain-containing protein C15D4.05 OS=Schizos... [more]
YJIA_ECOLI3.486e-2543.05Uncharacterized GTP-binding protein yjiA OS=Escher... [more]
COBW_PSEDE3.377e-2042.50Protein cobW OS=Pseudomonas denitrificans GN=cobW ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-014-H04-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736329 ID=EY736329; Name=EY736329; organism=Citrus sinensis; type=EST; length=816bp
CACGCGTCCGCGGACGCGTGGGTGGAAAGACGACATTGCTCAACCATATC
TTGACTGCAGAACACGGGAAGCGCATAGCTGTGATTGAGAACGAGTATGG
TGAAGTGGACATTGATGGGTCGTTAGTTGCTGCTAAAACTACTGGGGCTG
AGGACATAGTTTTGCTTAACAATGGCTGTTTGTGCTGCACAGTAAGAGGT
GATCTTGTGAGGATGATTTCGGAGTTAGTCAGTAAAAAGAAGGGGAAATT
CGACCATATTGTAATTGAGACTACACGATTGGCTAATCCGGCACCAATCA
TTCAGACATTTGATGCTGAGGATGCGATTTTTAATGAAGTGAAGTTGGAT
GGTGTTGTCACTTTGGTTGATGCTAAGCATGCGGGTGTGCATCTGGATGA
GGTTAAGCCGGTGGGACTTGTCCCTGACGCAGTCGAGCAGATTGCGTGTG
CCGACCGTATTATACTCCATAACGTATATCCACGGACTCGTCTCTCGCTG
TAGCGCCCATTCTCTATGATGCCAGGTGTGGCTGGCATAAGGGATGCCGT
GCGTGGTGCTGCCCGGGGGGGGCGAGCTAGGGCCAGGCGTGGCCCCCGCA
GCGGGGGCCTGTGAGCTGGGTGGTGGTGCGGCGCGGGAGTGCGGGGACCA
CGGAGGCGGGCGTCGGGTGGGTGGTGCGGCGGGGTGTGGATTGGGGGCCA
GGCTTGGCGGCGCCTGTGATGAACCCGCGGTGCCCGCCAGGCGGCGCATG
GTCCTCCGCGATCCCTAGAGGCAGGGGGCGGGCGGTGGTGGTAGGGTCGG
GGCGAGGGGGGAGAGA
back to top