EY736284

Overview
NameEY736284
Unique NameEY736284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736284 vs. ExPASy Swiss-Prot
Match: TNPO1_MOUSE (Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 4.867e-62
Identity = 122/240 (50.83%), Postives = 163/240 (67.92%), Query Frame = 3
Query:   39 VNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKYQRRNLKIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQLLPNSDKDLFPLLECFTSITQALGAGFL 758
            ++ WNLRKCSAAALDVL+NV+ DE+LP ++P+++  L       W  +E+ +L LGAIAEGC++G+ P+L E++  LI  L DK  L+RSI+CWTLSR++ ++V     Q      + ++  LLKRILD+NKRVQEAACS                   IL  L+ AF KYQ +NL I+YDAIGTLAD+VG  LN+P Y+ +LMPPLI KW +L + DKDLFPLLEC +S+  AL +GFL
Sbjct:  378 ISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF---HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS----QPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFL 610          
BLAST of EY736284 vs. ExPASy Swiss-Prot
Match: TNPO1_HUMAN (Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 4.867e-62
Identity = 122/240 (50.83%), Postives = 163/240 (67.92%), Query Frame = 3
Query:   39 VNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKYQRRNLKIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQLLPNSDKDLFPLLECFTSITQALGAGFL 758
            ++ WNLRKCSAAALDVL+NV+ DE+LP ++P+++  L       W  +E+ +L LGAIAEGC++G+ P+L E++  LI  L DK  L+RSI+CWTLSR++ ++V     Q      + ++  LLKRILD+NKRVQEAACS                   IL  L+ AF KYQ +NL I+YDAIGTLAD+VG  LN+P Y+ +LMPPLI KW +L + DKDLFPLLEC +S+  AL +GFL
Sbjct:  378 ISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF---HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS----QPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFL 610          
BLAST of EY736284 vs. ExPASy Swiss-Prot
Match: TNPO1_BOVIN (Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 4.867e-62
Identity = 122/240 (50.83%), Postives = 163/240 (67.92%), Query Frame = 3
Query:   39 VNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKYQRRNLKIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQLLPNSDKDLFPLLECFTSITQALGAGFL 758
            ++ WNLRKCSAAALDVL+NV+ DE+LP ++P+++  L       W  +E+ +L LGAIAEGC++G+ P+L E++  LI  L DK  L+RSI+CWTLSR++ ++V     Q      + ++  LLKRILD+NKRVQEAACS                   IL  L+ AF KYQ +NL I+YDAIGTLAD+VG  LN+P Y+ +LMPPLI KW +L + DKDLFPLLEC +S+  AL +GFL
Sbjct:  378 ISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF---HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS----QPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFL 610          
BLAST of EY736284 vs. ExPASy Swiss-Prot
Match: TNPO2_MOUSE (Transportin-2 OS=Mus musculus GN=Tnpo2 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 8.301e-62
Identity = 125/237 (52.74%), Postives = 159/237 (67.09%), Query Frame = 3
Query:   48 WNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKYQRRNLKIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQLLPNSDKDLFPLLECFTSITQALGAGFL 758
            WNLRKCSAAALDVL+NVF +E+LP L+P+++  L       W  +E+ +L LGAIAEGC++G+ P+L E++  LI  L DK  L+RSI+CWTLSR++ ++V     Q      + ++  LLKRILD NKRVQEAACS                   IL  L+ AFGKYQ +NL I+YDAIGTLAD+VG  LNQP Y+  LMPPLI KW  L + DKDLFPLLEC +S+  AL +GFL
Sbjct:  370 WNLRKCSAAALDVLANVFREELLPHLLPLLKGLLF---HPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVS----QPPDMHLKPLMTELLKRILDGNKRVQEAACSAFATLEEEACTELVPYLSYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQPEYIQKLMPPLIQKWNELKDEDKDLFPLLECLSSVATALQSGFL 599          
BLAST of EY736284 vs. ExPASy Swiss-Prot
Match: TNPO2_HUMAN (Transportin-2 OS=Homo sapiens GN=TNPO2 PE=1 SV=3)

HSP 1 Score: 237.269 bits (604), Expect = 8.301e-62
Identity = 125/237 (52.74%), Postives = 159/237 (67.09%), Query Frame = 3
Query:   48 WNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKYQRRNLKIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQLLPNSDKDLFPLLECFTSITQALGAGFL 758
            WNLRKCSAAALDVL+NVF +E+LP L+P+++  L       W  +E+ +L LGAIAEGC++G+ P+L E++  LI  L DK  L+RSI+CWTLSR++ ++V     Q      + ++  LLKRILD NKRVQEAACS                   IL  L+ AFGKYQ +NL I+YDAIGTLAD+VG  LNQP Y+  LMPPLI KW  L + DKDLFPLLEC +S+  AL +GFL
Sbjct:  370 WNLRKCSAAALDVLANVFREELLPHLLPLLKGLLF---HPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVS----QPPDMHLKPLMTELLKRILDGNKRVQEAACSAFATLEEEACTELVPYLSYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQPEYIQKLMPPLIQKWNELKDEDKDLFPLLECLSSVATALQSGFL 599          
BLAST of EY736284 vs. ExPASy Swiss-Prot
Match: TNPO_DICDI (Transportin OS=Dictyostelium discoideum GN=tnpo PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.860e-54
Identity = 113/244 (46.31%), Postives = 159/244 (65.16%), Query Frame = 3
Query:   48 WNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKYQRRNLKIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQLLPNSDKDLFPLLECFTSITQALGAGFLNLLSLY 776
            W +RK SA A+DVLS +F D E L   +P+I+ +++      W  RE+A+LALGAIA+G   GL PHLS+++ +LI  L+D  PL+RSI+CWTLSR+S +I Q     +GR+    +++ LL RI+D NK+VQEAACS                  +IL   + AFGKYQ +NL I+YDAI TLA  VG ELN+P  ++IL+PPL+ K+  L +S+K+L PLL C   +  ++GAG  NL+SL+
Sbjct:  405 WTIRKSSAFAIDVLSGIFPDAEYLSVTLPLIEQRMNEQNP--WPVRESAILALGAIADGSKNGLAPHLSKVIPYLINTLNDPKPLVRSITCWTLSRYSYWIAQ----ADGRDYLHPLVVNLLNRIVDNNKKVQEAACSAFATLEEEADLLLIPYLQMILVTFVNAFGKYQAKNLLILYDAISTLAKVVGNELNKPELINILVPPLLQKFNALDDSNKNLLPLLGCLNQVCSSIGAGLQNLISLF 642          
BLAST of EY736284 vs. ExPASy Swiss-Prot
Match: IMB2_SCHPO (Importin subunit beta-2 OS=Schizosaccharomyces pombe GN=kap104 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.087e-53
Identity = 106/236 (44.92%), Postives = 153/236 (64.83%), Query Frame = 3
Query:   48 WNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKYQRRNLKIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQLLPNSDKDLFPLLECFTSITQALGAGF 755
            WNLRKCSAAALDVLS+ +   +L  ++P ++  L++   E WK +EA VLA+GAIAEGC+ G+  +L E+  + + LLD K PL+R+I+CWTL R+SK+       ++ ++ F  +L GLL+ ++D NK+VQEA CS                   IL +L  AF KYQR+N+ I+YDA+ TLAD VG  LN   Y+++L+ PL+ KW ++P+ D +LFPL EC +S+  AL  GF
Sbjct:  390 WNLRKCSAAALDVLSSFWKQRLLEIILPHLKQSLTS---EDWKVQEAGVLAVGAIAEGCMDGMVQYLPELYPYFLSLLDSKKPLVRTITCWTLGRYSKWASCLESEEDRQKYFVPLLQGLLRMVVDNNKKVQEAGCSAFAILEEQAGPSLVPYLEPILTNLAFAFQKYQRKNVLILYDAVQTLADYVGSALNDKRYIELLITPLLQKWSMIPDDDPNLFPLFECLSSVAVALRDGF 622          
BLAST of EY736284 vs. ExPASy Swiss-Prot
Match: IMB2_YEAST (Importin subunit beta-2 OS=Saccharomyces cerevisiae GN=KAP104 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.752e-38
Identity = 92/241 (38.17%), Postives = 137/241 (56.85%), Query Frame = 3
Query:   48 WNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGK----YQRRNLKIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQLLPNSDKDLFPLLECFTSITQALGAGFL 758
            WNLRKCSAA LDV++N+   +++    P ++  L   G + W  REA +LALGA+AEG +K     L  ++ FL+  L+DK+  +R ++CWTLSRFS +I+QD       E    VL  ++  ++D  K VQEAA S                  +    L+ +F K    Y+++NL I+YDAIG  A+    +      + I++PPLI KW LL +SDK+L+PLLEC + +  +LG  F+
Sbjct:  397 WNLRKCSAATLDVMTNILPHQVMDIAFPFLREHL---GSDRWFIREATILALGAMAEGGMKYFNDGLPALIPFLVEQLNDKWAPVRKMTCWTLSRFSPWILQD-----HTEFLIPVLEPIINTLMDKKKDVQEAAIS--SVAVFIENADSELVETLFYSQLLTSFDKCLKYYKKKNLIILYDAIGRFAEKCALD---ETAMQIILPPLIEKWALLSDSDKELWPLLECLSCVASSLGERFM 624          
The following BLAST results are available for this feature:
BLAST of EY736284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TNPO1_MOUSE4.867e-6250.83Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2[more]
TNPO1_HUMAN4.867e-6250.83Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2[more]
TNPO1_BOVIN4.867e-6250.83Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2[more]
TNPO2_MOUSE8.301e-6252.74Transportin-2 OS=Mus musculus GN=Tnpo2 PE=2 SV=1[more]
TNPO2_HUMAN8.301e-6252.74Transportin-2 OS=Homo sapiens GN=TNPO2 PE=1 SV=3[more]
TNPO_DICDI2.860e-5446.31Transportin OS=Dictyostelium discoideum GN=tnpo PE... [more]
IMB2_SCHPO1.087e-5344.92Importin subunit beta-2 OS=Schizosaccharomyces pom... [more]
IMB2_YEAST3.752e-3838.17Importin subunit beta-2 OS=Saccharomyces cerevisia... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-014-C07-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736284 ID=EY736284; Name=EY736284; organism=Citrus sinensis; type=EST; length=837bp
CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGATCGTTAATGTATGG
AATCTACGGAAGTGCAGTGCAGCGGCTCTAGATGTCCTCTCAAATGTTTT
TGGGGATGAGATTCTTCCAACTTTGATGCCTGTTATTCAGGCTAAGTTGT
CTGCCAGTGGTGATGAAGCCTGGAAAGACAGGGAAGCTGCTGTTTTGGCT
CTTGGTGCTATAGCTGAAGGTTGCATTAAAGGGCTTTATCCTCATCTATC
TGAGATTGTGGCATTTCTTATCCCTCTTTTAGATGATAAGTTTCCTTTGA
TACGAAGTATTTCTTGTTGGACCCTTTCTCGATTCAGCAAATTTATTGTG
CAGGACATCGGCCACCAGAATGGTCGTGAACAATTTGAGAAGGTCCTTAT
GGGCCTTTTAAAGAGAATACTGGATACCAACAAGCGGGTGCAAGAGGCTG
CTTGTTCTGCGTTTGCGACACTTGAAGAGGAGGCTGCAGAAGAGTTAGCA
CCACGTTTAGAAATAATCTTACAGCACCTTATGATGGCTTTTGGAAAATA
TCAGAGACGGAACCTCAAAATTGTATATGATGCTATTGGAACTCTGGCTG
ATGCTGTTGGATTCGAACTAAACCAGCCTGTNTATCTTGATATTTTGATG
CCACCTTTAATTGCAAAGTGGCAGCTGCTTCCAAATTCAGATAAAGATCT
CTTTCCACTGCTTGAGTGTTTTACATCCATAACACAGGCATTGGGCGCTG
GATTCCTCAATTTGCTCAGCCTGTATCCAGAAGGGGGTAAATATGATCCA
GACCCACAACTGGCAAAAGTTGATCCTGTGGCAGCTG
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