EY736240

Overview
NameEY736240
Unique NameEY736240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736240 vs. ExPASy Swiss-Prot
Match: VPS41_SOLLC (Vacuolar protein sorting-associated protein 41 homolog OS=Solanum lycopersicum GN=VPS41 PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.221e-71
Identity = 135/188 (71.81%), Postives = 146/188 (77.66%), Query Frame = 3
Query:  102 MAPFPAENGVXXXXXXXXXXXXXXXXXXXXXXXXXXPRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNPQKWLGYRDQVLHSGEGPPHVVK 665
            M+P P+ENG+                          PRLKYQRMG S+PSLL+ DAA+C+AVAERMIALGTH G VHILDFLGNQVKEF AHTAAVNDL FD DGEYVGSCSDDGSVVINSLFTDE+MKF+YHRPMKAI+LDPDY R  SRRFV GGLAG LYLN +KWLGYRDQVLHSGEGP H VK
Sbjct:    1 MSPKPSENGIDGDDERDEEEEDSEEEEAEEEEEDE-PRLKYQRMGASVPSLLSADAATCIAVAERMIALGTHGGAVHILDFLGNQVKEFAAHTAAVNDLCFDTDGEYVGSCSDDGSVVINSLFTDERMKFEYHRPMKAIALDPDYARTSSRRFVTGGLAGQLYLNVKKWLGYRDQVLHSGEGPIHAVK 187          
BLAST of EY736240 vs. ExPASy Swiss-Prot
Match: VPS41_ARATH (Vacuolar protein sorting-associated protein 41 homolog OS=Arabidopsis thaliana GN=VPS41 PE=2 SV=3)

HSP 1 Score: 261.922 bits (668), Expect = 3.326e-69
Identity = 125/153 (81.70%), Postives = 139/153 (90.85%), Query Frame = 3
Query:  210 PRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNPQKWLGYRDQVLHSGEGPPHVVK 665
            PRLKYQRMGG++P+LL+NDAASC+AVA RMIALGTH GTV ILD LGNQVKEF AHTA VND++FD +GEY+GSCSDDGSVVINSLFT DEKMKFDYHRPMKAISLDPDYT+K S+RFVAGGLAGHLY+N +KW G +DQVLHSGEGP H VK
Sbjct:   42 PRLKYQRMGGNVPALLSNDAASCIAVAARMIALGTHDGTVRILDLLGNQVKEFRAHTAPVNDINFDTEGEYIGSCSDDGSVVINSLFTDDEKMKFDYHRPMKAISLDPDYTKKQSKRFVAGGLAGHLYMNSKKWFGNKDQVLHSGEGPIHSVK 194          
BLAST of EY736240 vs. ExPASy Swiss-Prot
Match: VPS41_HUMAN (Vacuolar protein sorting-associated protein 41 homolog OS=Homo sapiens GN=VPS41 PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 5.028e-25
Identity = 57/153 (37.25%), Postives = 90/153 (58.82%), Query Frame = 3
Query:  210 PRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNPQKWLG-YRDQVLHSGEGPPHVVK 665
            P+LKY+R+   +  +L  DAASC+ V ++ +ALGTH G V++LD  GN  ++F      +N +S D  GE++G CS+DG V +  L++ E+    +  P+K I++ P + R   ++FV GG    L L  + W+  ++  VLH GEG    VK
Sbjct:   28 PKLKYERLSNGVTEILQKDAASCMTVHDKFLALGTHYGKVYLLDVQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSGEEFHETFDCPIKIIAVHPHFVRSSCKQFVTGG--KKLLLFERSWMNRWKSAVLHEGEGNIRSVK 178          
BLAST of EY736240 vs. ExPASy Swiss-Prot
Match: VPS41_MOUSE (Vacuolar protein sorting-associated protein 41 homolog OS=Mus musculus GN=Vps41 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.120e-24
Identity = 56/153 (36.60%), Postives = 90/153 (58.82%), Query Frame = 3
Query:  210 PRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNPQKWLG-YRDQVLHSGEGPPHVVK 665
            P+LKY+R+   +  +L  DAASC+ V ++ +ALGTH G V++LD  GN  ++F      +N +S D  GE++G CS+DG + +  L++ E+    +  P+K I++ P + R   ++FV GG    L L  + W+  ++  VLH GEG    VK
Sbjct:   27 PKLKYERLSNGVTEILQKDAASCMTVHDKFLALGTHYGKVYLLDVQGNITQKFDVSPVKINQISLDDSGEHMGVCSEDGKLQVFGLYSGEEFHETFDCPIKIIAVHPQFVRSSCKQFVTGG--KKLLLFERTWMNRWKSSVLHEGEGNIRSVK 177          
BLAST of EY736240 vs. ExPASy Swiss-Prot
Match: VPS41_SCHPO (Vacuolar protein sorting-associated protein 41 OS=Schizosaccharomyces pombe GN=vps41 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.405e-21
Identity = 49/146 (33.56%), Postives = 87/146 (59.59%), Query Frame = 3
Query:  210 PRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNPQKWLGYRDQVLHSGEG 647
            P+L Y+R+         ND  S  A+++     G+H G ++I    G  +++   H+A+V DLS D++ E + SCS DG ++I+++ T E    D+ RP+ ++++DP Y+ + SR+ ++GG AG + L+ + WLG +D VL +  G
Sbjct:   24 PKLIYERITEKFQGCFMNDTISACAISKEHFFFGSHNGAIYIYQKNGILLRKMILHSASVVDLSVDLESENLASCSMDGKMIISNITTRETTVHDFKRPLLSVAIDPYYSTRSSRQVLSGGRAGKVVLSEKGWLGNKDTVLQADCG 169          
BLAST of EY736240 vs. ExPASy Swiss-Prot
Match: VPS41_YEAST (Vacuolar protein sorting-associated protein 41 OS=Saccharomyces cerevisiae GN=VPS41 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 3.058e-14
Identity = 42/142 (29.58%), Postives = 78/142 (54.93%), Query Frame = 3
Query:  210 PRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNPQKWLGYRDQVL 632
            P LKY R+     +    D+ S     +   A GTH+G +H+       +K    H +++  L  + DG+Y  + S DG+V+I S+   + + ++D+ RP+ +++L  ++  + SR FV+GG+AG + L+ + WLG R  ++
Sbjct:   99 PLLKYTRISQLPKNFFQRDSISSCLFGDTFFAFGTHSGILHLTTCAFEPIKTIKCHRSSI--LCINTDGKYFATGSIDGTVIIGSMDDPQNITQYDFKRPINSVALHSNF--QASRMFVSGGMAGDVVLSQRNWLGNRIDIV 236          
The following BLAST results are available for this feature:
BLAST of EY736240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
VPS41_SOLLC1.221e-7171.81Vacuolar protein sorting-associated protein 41 hom... [more]
VPS41_ARATH3.326e-6981.70Vacuolar protein sorting-associated protein 41 hom... [more]
VPS41_HUMAN5.028e-2537.25Vacuolar protein sorting-associated protein 41 hom... [more]
VPS41_MOUSE1.120e-2436.60Vacuolar protein sorting-associated protein 41 hom... [more]
VPS41_SCHPO4.405e-2133.56Vacuolar protein sorting-associated protein 41 OS=... [more]
VPS41_YEAST3.058e-1429.58Vacuolar protein sorting-associated protein 41 OS=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-013-F07-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736240 ID=EY736240; Name=EY736240; organism=Citrus sinensis; type=EST; length=870bp
CCACGCGTCCGGTTCCCTTCTTTCTCAATCATTCTATTATTATTTATTAT
ATTTCATTTTTCGCTCCGAACCGCACCAACCTGACGAAAGTCACCGTACA
AATGGCTCCGTTTCCGGCGGAAAACGGCGTCGAAGGCGACGACGAGAGAG
AAGAAGAAGAAGAAGAAGACGAAGACGAAGAAGAAGAAGAAGAGGAGGAG
GAGGAAGAGCCAAGGCTCAAGTATCAAAGAATGGGAGGCAGCTTACCTTC
TCTTTTGGCAAACGACGCCGCTTCGTGCGTTGCTGTAGCTGAACGGATGA
TCGCTCTCGGTACTCACGCCGGCACAGTTCATATTCTTGATTTTTTGGGG
AATCAGGTTAAGGAGTTTCCTGCTCATACTGCTGCTGTCAACGACCTTAG
CTTTGATGTAGATGGCGAATATGTAGGAAGTTGTTCGGATGATGGTTCTG
TTGTGATAAATAGCCTTTTCACTGATGAAAAAATGAAGTTCGATTATCAT
CGCCCAATGAAGGCCATTTCACTGGACCCAGATTATACCAGGAAAATGTC
TAGAAGATTTGTTGCTGGAGGCTTAGCAGGTCATTTATATTTAAATCCAC
AAAAATGGCTAGGCTACCGAGACCAGGTGTTGCACTCTGGTGAAGGTCCG
CCGCATGTCGTGAAGGGGGTGGCCCAGCCCGTGGGCTCGGGCCCGTCGTG
GCGGGCTGCGCCCGTCCCGGCCGGGGCCATACTGTCCGTACGCCTCCTGC
TGGACGGGCACGGGGCCGGCCCCCCGTCGGCGCCCCCGCGTCGGGCGTTG
CGGTGGGCCGGCGCCGCGGCCGCGGGTCCCTCCCTGCCCATTGTGCCGGC
GTCCTCCCCCGCCCGGCCGC
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