EY736238

Overview
NameEY736238
Unique NameEY736238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY736238 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 370.548 bits (950), Expect = 5.859e-102
Identity = 184/212 (86.79%), Postives = 190/212 (89.62%), Query Frame = 2 
Query:    5 HYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGMWGGKGQGKSFQCELVFAKMGINPIMMSAGQLESGNAGEPAKLIRHRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNPMVNATLMNIADNPPCVQLPAMYNNEENPRVPIIVTGNDFSTLCAPLIRDGLMEKVS-GPLPRRTPGVC 637
            HYAVMSSYDYISQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+SLPNIK+PLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAG+LESGNAGEPAKLIR RYREAADII+KGKMCCL INDLDAGAGRMGGTTQYTVNN MVNATLMNIADNP  VQLP MYN EENPRVPIIVTGNDFSTL APLIRDG MEK    P      GVC
Sbjct:  105 HYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 316
[Close]
BLAST of EY736238 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 370.548 bits (950), Expect = 5.859e-102
Identity = 184/212 (86.79%), Postives = 190/212 (89.62%), Query Frame = 2 
Query:    5 HYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGMWGGKGQGKSFQCELVFAKMGINPIMMSAGQLESGNAGEPAKLIRHRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNPMVNATLMNIADNPPCVQLPAMYNNEENPRVPIIVTGNDFSTLCAPLIRDGLMEKVS-GPLPRRTPGVC 637
            HYAVMSSYDYISQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+SLPNIK+PLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAG+LESGNAGEPAKLIR RYREAADII+KGKMCCL INDLDAGAGRMGGTTQYTVNN MVNATLMNIADNP  VQLP MYN EENPRVPIIVTGNDFSTL APLIRDG MEK    P      GVC
Sbjct:  105 HYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 316
[Close]
BLAST of EY736238 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 358.992 bits (920), Expect = 1.764e-98
Identity = 178/212 (83.96%), Postives = 189/212 (89.15%), Query Frame = 2 
Query:    5 HYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGMWGGKGQGKSFQCELVFAKMGINPIMMSAGQLESGNAGEPAKLIRHRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNPMVNATLMNIADNPPCVQLPAMYNNEENPRVPIIVTGNDFSTLCAPLIRDGLMEKVS-GPLPRRTPGVC 637
            H AV+SSY+Y+SQGLRTY+ DNT+ G YIAPAFMDKLVVHI+KNFM+LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAG+LESGNAGEPAKLIR RYREAADII+KGKMCCL INDLDAGAGRMGGTTQYTVNN MVNATLMNIADNP  VQLP MYN E+NPRVPIIVTGNDFSTL APLIRDG MEK    P      GVC
Sbjct:   96 HEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVC 307
[Close]
BLAST of EY736238 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 356.295 bits (913), Expect = 1.143e-97
Identity = 176/212 (83.02%), Postives = 187/212 (88.21%), Query Frame = 2 
Query:    5 HYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGMWGGKGQGKSFQCELVFAKMGINPIMMSAGQLESGNAGEPAKLIRHRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNPMVNATLMNIADNPPCVQLPAMYNNEENPRVPIIVTGNDFSTLCAPLIRDGLMEKVS-GPLPRRTPGVC 637
            H+AV+SSY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILG+WGGKGQGKSFQCELV AKMGINPIMMSAG+LESGNAGEPAKLIR RYREAAD+I+KGKMCCL INDLDAGAGRMGGTTQYTVNN MVNATLMNIADNP  VQLP MYN EEN RVPII TGNDFSTL APLIRDG MEK    P      GVC
Sbjct:  105 HHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 316
[Close]
BLAST of EY736238 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 3.327e-97
Identity = 175/215 (81.40%), Postives = 186/215 (86.51%), Query Frame = 2 
Query:    5 HYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGMWGGKGQGKSFQCELVFAKMGINPIMMSAGQLESGNAGEPAKLIRHRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNPMVNATLMNIADNPPCVQLPAMYNNEENPRVPIIVTGNDFSTLCAPLIRDGLMEKVS-GPLPRRTPGVCATV 646
            H+AV+ SY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+ LPNIKVPLILG+WGGKGQGKSFQCELVF KMGINPIMMSAG+LESGNAGEPAKLIR RYREAA+IIRKG MCCL INDLDAGAGRMGGTTQYTVNN MVNATLMNIADNP  VQLP MYN +EN RVPIIVTGNDFSTL APLIRDG MEK    P      GVC  +
Sbjct:  109 HHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGI 323
[Close]
BLAST of EY736238 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 7.412e-97
Identity = 176/212 (83.02%), Postives = 186/212 (87.74%), Query Frame = 2 
Query:    5 HYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGMWGGKGQGKSFQCELVFAKMGINPIMMSAGQLESGNAGEPAKLIRHRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNPMVNATLMNIADNPPCVQLPAMYNNEENPRVPIIVTGNDFSTLCAPLIRDGLMEKVS-GPLPRRTPGVC 637
            H+A+MSSY+YIS GLR YN DN +DG YIAPAFMDKLVVHITKNFM+LPN+KVPLILG+WGGKGQGKSFQCELVFAKM I+PIMMSAG+LESGNAGEPAKLIR RYREAADIIRKGKMC L INDLDAGAGR+GGTTQYTVNN MVNATLMNIADNP  VQLP MYN EENPRVPIIVTGNDFSTL APLIRDG MEK    P      GVC
Sbjct:  105 HFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVFAKMRISPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 316
[Close]
BLAST of EY736238 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 9.680e-97
Identity = 173/212 (81.60%), Postives = 186/212 (87.74%), Query Frame = 2 
Query:    5 HYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGMWGGKGQGKSFQCELVFAKMGINPIMMSAGQLESGNAGEPAKLIRHRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNPMVNATLMNIADNPPCVQLPAMYNNEENPRVPIIVTGNDFSTLCAPLIRDGLMEKVS-GPLPRRTPGVC 637
            H+AV+ SY+Y+SQGLR YN+DNT+DG YIAP+FMDKLVVHITKNF+ LPNIKVPLILG+WGGKGQGKSFQCELVF KMGINPIMMSAG+LESGNAGEPAKLIR RYREAA+IIRKG +CCL INDLDAGAGRMGGTTQYTVNN MVNATLMNIADNP  VQLP MYN +EN RVPIIVTGNDFSTL APLIRDG MEK    P      GVC
Sbjct:  109 HHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 320
[Close]
BLAST of EY736238 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.651e-96
Identity = 173/212 (81.60%), Postives = 186/212 (87.74%), Query Frame = 2 
Query:    5 HYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGMWGGKGQGKSFQCELVFAKMGINPIMMSAGQLESGNAGEPAKLIRHRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNPMVNATLMNIADNPPCVQLPAMYNNEENPRVPIIVTGNDFSTLCAPLIRDGLMEKVS-GPLPRRTPGVC 637
            H+A+M+SY+Y+SQ L+TY LDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILG+WGGKGQGKSFQCELVF KMGINPIMMSAG+LESGNAGEPAKLIR RYREAA+IIRKG MCCL INDLDAGAGRMGGTTQYTVNN MVNATLMNIADNP  VQLP MYN +EN RVPIIVTGNDFSTL APLIRDG MEK    P      GVC
Sbjct:  104 HHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 315
[Close]
BLAST of EY736238 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.651e-96
Identity = 173/215 (80.47%), Postives = 186/215 (86.51%), Query Frame = 2 
Query:    5 HYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGMWGGKGQGKSFQCELVFAKMGINPIMMSAGQLESGNAGEPAKLIRHRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNPMVNATLMNIADNPPCVQLPAMYNNEENPRVPIIVTGNDFSTLCAPLIRDGLMEKVS-GPLPRRTPGVCATV 646
            H AV+SSY+YIS GLR Y+ DN +DG YIAPAFMDKL VHI KNF++LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAG+LESGNAGEPAKLIR RYREAADII+KGKMCCL INDLDAGAGR+GGTTQYTVNN MVNATLMNIADNP  VQLP MYN EENPRVPIIVTGNDFSTL APLIRDG M+K    P      G+C  +
Sbjct:  102 HNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGI 316
[Close]
BLAST of EY736238 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 351.288 bits (900), Expect = 3.678e-96
Identity = 176/212 (83.02%), Postives = 186/212 (87.74%), Query Frame = 2 
Query:    5 HYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGMWGGKGQGKSFQCELVFAKMGINPIMMSAGQLESGNAGEPAKLIRHRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNPMVNATLMNIADNPPCVQLPAMYNNEENPRVPIIVTGNDFSTLCAPLIRDGLMEKVS-GPLPRRTPGVC 637
            H A++SSY+YISQGLR Y+ DNT+DGLYIAPAFMDKL+VH+ KNFM+LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAG+LESGN GEPAKLIR RYREAADII KGKMCCL INDLDAGAGRMGGTTQYTVNN MVNATLMNIAD P  VQLP MYN EENPRVPIIVTGNDFSTL APLIRDG MEK    P      GVC
Sbjct:   93 HEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 303
The following BLAST results are available for this feature:
BLAST of EY736238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RCA2_LARTR5.859e-10286.79Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR5.859e-10286.79Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ1.764e-9883.96Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH1.143e-9783.02Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC3.327e-9781.40Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO7.412e-9783.02Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC9.680e-9781.60Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN1.651e-9681.60Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA1.651e-9680.47Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU3.678e-9683.02Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-013-F04-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736238 ID=EY736238; Name=EY736238; organism=Citrus sinensis; type=EST; length=803bp
GAATCACTATGCTGTCATGAGTTCTTATGACTACATCAGCCAAGGTCTCC
GCACATACAACTTGGACAACACGATCGACGGTCTCTACATTGCCCCTGCT
TTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCATGTCCCTGCC
CAACATCAAGGTTCCTCTCATCTTGGGTATGTGGGGAGGCAAAGGACAAG
GAAAATCATTCCAATGTGAGCTTGTTTTCGCCAAGATGGGCATCAACCCA
ATTATGATGAGTGCCGGACAATTGGAAAGTGGCAATGCTGGAGAACCCGC
TAAGTTGATCAGGCACAGGTACCGTGAGGCAGCTGACATTATCAGGAAGG
GAAAAATGTGCTGCCTCATGATCAATGATCTTGATGCAGGAGCTGGTCGT
ATGGGTGGCACCACCCAGTACACAGTTAACAACCCAATGGTTAACGCCAC
ACTCATGAACATTGCTGATAACCCACCTTGTGTCCAACTCCCTGCTATGT
ACAACAACGAGGAGAACCCCCGTGTCCCAATCATAGTCACCGGTAATGAC
TTCTCAACATTGTGTGCTCCCCTCATCCGTGATGGTCTCATGGAGAAAGT
CTCGGGGCCCCTCCCACGGCGGACCCCAGGCGTGTGTGCCACGGTCACCC
CCGGAATGACCACGTCGGTGGTCACCAGATTTCCAGCCTTTTGAGACCTA
CCGCGGGCACGCCAGCATGCGCTCCGAAGCCGGCCGGCCACCACTTTCCC
AAGCCCACGCGCAGCGACCGATCACCCCCAAGGGCGATCCGCGCGGCGCG
CGG
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