EY736218

Overview
NameEY736218
Unique NameEY736218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736218 vs. ExPASy Swiss-Prot
Match: SKIP2_ARATH (F-box protein SKIP2 OS=Arabidopsis thaliana GN=SKIP2 PE=1 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 6.150e-75
Identity = 138/224 (61.61%), Postives = 173/224 (77.23%), Query Frame = 3
Query:  135 MGQTPSTAIDPSDR---FNILSPAIVSN-DGVEFSDELDKARDFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVDGGSRYRLSLNAQSEILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITDHGMVAFAQNCKTLKKLSCGSCMFGAKAINSVLDHCELLEELSIKRLRGIHDGADPI--PAGSRCRFVREVHLPE 788
            MGQ PS+  + + R     + SP IV+  + +   + +D  RDFTGDLPD+CLA++FQFLG+GDRKRCSLVCKRWL VDG SR+RLSL+A+ EI S L S+F+RFDSVTKLALRCDRKS+SL D+AL +IS+RC  LTR+KLRGCREITD GM  FA+NCK LKKLS GSC FGAK +N++L+HC+LLEELS+KRLRGIH+ A+ I  P  +    +R + L E
Sbjct:    1 MGQAPSSTAESNGRELDLRLWSPVIVAGGESMAVGNVVD--RDFTGDLPDECLAHVFQFLGAGDRKRCSLVCKRWLLVDGQSRHRLSLDAKDEISSFLTSMFNRFDSVTKLALRCDRKSVSLSDEALAMISVRCLNLTRVKLRGCREITDLGMEDFAKNCKNLKKLSVGSCNFGAKGVNAMLEHCKLLEELSVKRLRGIHEAAELIHLPDDASSSSLRSICLKE 222          

HSP 2 Score: 36.1946 bits (82), Expect = 6.150e-75
Identity = 17/30 (56.67%), Postives = 21/30 (70.00%), Query Frame = 1
Query:  766 SVKSICLKGLVNGQSLEPLVIAAKKLKLWK 855
            S++SICLK LVNGQ  EPL+   + LK  K
Sbjct:  214 SLRSICLKELVNGQVFEPLLATTRTLKTLK 243          
BLAST of EY736218 vs. ExPASy Swiss-Prot
Match: FBL16_ARATH (F-box/LRR-repeat protein 16 OS=Arabidopsis thaliana GN=FBL16 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 4.219e-69
Identity = 132/221 (59.73%), Postives = 170/221 (76.92%), Query Frame = 3
Query:  135 MGQTPSTAIDPSDRFNIL---SPAIVSNDGVEFSDELDKARDFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVDGGSRYRLSLNAQSEILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITDHGMVAFAQNCKTLKKLSCGSCMFGAKAINSVLDHCELLEELSIKRLRGIHDGADPI----PAGSRCRFVREV 776
            MGQ PS+  +P+ R   L   SP  +  + + F D      DFT +LPDDCLA+IFQFL +GDRKRCSLV KRWL VDG +R+RLSL+A+SEIL  LP +F+RFDSVTKLALRCDR+S SL D+AL ++S+RC  L R+KLRGCREITD GM +FA+NCK+L+KLSCGSC FGAK IN++L+HC++LEELS+KR+RG+H+ A+PI     A  R  F++E+
Sbjct:    1 MGQAPSSPAEPNVRDTSLCLWSPEFLDCESIGFEDG---DYDFTANLPDDCLAHIFQFLSAGDRKRCSLVSKRWLLVDGQNRHRLSLDAKSEILPFLPCIFNRFDSVTKLALRCDRRSFSLSDEALFIVSIRCSNLIRVKLRGCREITDLGMESFARNCKSLRKLSCGSCTFGAKGINAMLEHCKVLEELSLKRIRGLHELAEPIKLSLSASLRSVFLKEL 218          
BLAST of EY736218 vs. ExPASy Swiss-Prot
Match: FB37_ARATH (F-box protein At1g47056 OS=Arabidopsis thaliana GN=At1g47056 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.573e-66
Identity = 108/159 (67.92%), Postives = 136/159 (85.53%), Query Frame = 3
Query:  249 DFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVDGGSRYRLSLNAQSEILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITDHGMVAFAQNCKTLKKLSCGSCMFGAKAINSVLDHCELLEELSIKRLRGIHD 725
            D+T  LPD+CLA +FQFL SG+RKRC+LVC+RW+ V+G +RYRLSL+A+S++++S+PS+FSRFDSVTKL+L+CDR+S+S+ D+ALV ISLRC+ L RLKLR CRE+TD GM AFA+NCK LK  SCGSC FGAK + +VLDHC  LEELSIKRLRG  D
Sbjct:   38 DYTSSLPDECLALVFQFLNSGNRKRCALVCRRWMIVEGQNRYRLSLHARSDLITSIPSLFSRFDSVTKLSLKCDRRSVSIGDEALVKISLRCRNLKRLKLRACRELTDVGMAAFAENCKDLKIFSCGSCDFGAKGVKAVLDHCSNLEELSIKRLRGFTD 196          

HSP 2 Score: 39.2762 bits (90), Expect = 3.573e-66
Identity = 19/33 (57.58%), Postives = 23/33 (69.70%), Query Frame = 1
Query:  757 AALSVKSICLKGLVNGQSLEPLVIAAKKLKLWK 855
            AA S+KSICLK L NGQ   P+++ AK LK  K
Sbjct:  207 AASSLKSICLKELYNGQCFGPVIVGAKNLKSLK 239          
BLAST of EY736218 vs. ExPASy Swiss-Prot
Match: FBL8_ARATH (Putative F-box/LRR-repeat protein 8 OS=Arabidopsis thaliana GN=FBL8 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.902e-53
Identity = 101/184 (54.89%), Postives = 139/184 (75.54%), Query Frame = 3
Query:  237 DKARDFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVDGGSRYRLSLNAQSEILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITDHGMVAFAQNCKTLKKLSCGSCMFGAKAINSVLDHCELLEELSIKRLRGIHDGADPIPAGSRCRFVREVHLPE 788
            D+  D+  +LPD+CL+ IFQ L   D KRCSLVC+RWL ++G  R+RLSL AQS+++S +PS+F+RFDSVTKL LR DR+S+ + D+A V+IS+RC+ LTRLKLRGC EI+D G++ F +NC++LKK+S GSC FG K +N++L+ C  LEELS+KRLRGI  GA+ I  G     ++ + L E
Sbjct:   68 DEPYDYISNLPDECLSLIFQSLTCADLKRCSLVCRRWLTIEGQCRHRLSLKAQSDLISVIPSLFTRFDSVTKLVLRSDRRSLGICDNAFVMISVRCRNLTRLKLRGCPEISDLGIIGFTENCRSLKKVSFGSCGFGVKGMNALLNTCLGLEELSVKRLRGIGAGAELIGPGGAAGSLKVICLKE 251          
The following BLAST results are available for this feature:
BLAST of EY736218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SKIP2_ARATH6.150e-7561.61F-box protein SKIP2 OS=Arabidopsis thaliana GN=SKI... [more]
FBL16_ARATH4.219e-6959.73F-box/LRR-repeat protein 16 OS=Arabidopsis thalian... [more]
FB37_ARATH3.573e-6667.92F-box protein At1g47056 OS=Arabidopsis thaliana GN... [more]
FBL8_ARATH1.902e-5354.89Putative F-box/LRR-repeat protein 8 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-013-D04-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736218 ID=EY736218; Name=EY736218; organism=Citrus sinensis; type=EST; length=856bp
CCACGCGTCCGATTCATCATAATTATTTATTATAATTATAAACTCTTTCT
CAAAAGTTGTCAAGCACCCAAAAAACGAACGCACTAAGAGAAGATCCCTC
TCGTTTTTGTTGTGCGAAACTATTTTGTTCGCCGATGGGCCAAACACCTT
CAACGGCGATAGACCCGAGCGATCGGTTTAATATCTTATCTCCGGCGATC
GTTTCCAATGATGGTGTTGAGTTCTCCGACGAATTGGACAAGGCTCGGGA
TTTCACAGGCGATTTACCGGACGATTGTTTGGCATATATTTTTCAATTCC
TCGGTTCAGGAGATCGGAAGCGATGTTCCCTTGTGTGCAAACGGTGGCTC
CGCGTGGACGGCGGGAGTCGTTATCGGCTATCTCTCAATGCTCAGAGCGA
GATATTATCGTCTCTGCCTTCGGTTTTCTCGCGCTTCGACTCCGTCACGA
AGCTAGCTCTGCGATGCGACCGCAAATCGATTAGCTTAGACGACGACGCT
TTGGTTTTGATCTCTCTTCGTTGTCAGAAACTCACGCGCCTCAAGCTCCG
TGGTTGCCGCGAGATCACCGATCACGGTATGGTCGCATTTGCTCAAAATT
GCAAAACTCTGAAAAAACTTTCTTGCGGCTCGTGTATGTTTGGCGCCAAA
GCTATCAATTCGGTTCTTGATCACTGTGAGCTTCTCGAGGAGCTATCCAT
CAAGCGGCTCAGAGGAATCCACGACGGAGCGGATCCGATCCCAGCTGGAA
GCCGGTGCCGCTTTGTCCGTGAAGTCCATCTGCCTGAAAGGACTGGTGAA
CGGTCAGTCCTTGGAGCCCTTAGTAATCGCCGCTAAAAAGCTTAAACTTT
GGAAAT
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