EY736211

Overview
NameEY736211
Unique NameEY736211
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736211 vs. ExPASy Swiss-Prot
Match: SILP_SALTY (Putative cation-transporting P-type ATPase OS=Salmonella typhimurium GN=silP PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.077e-26
Identity = 66/181 (36.46%), Postives = 88/181 (48.62%), Query Frame = 3
Query:  378 LRDPVCGMAVIPPSKFGE-SYQGQTYQFCSQKCQEKFRADPERYIG--------NHPSAEPSSAAIEPTLQVATE------FTCPMHPEIRQPGPGNCPKCGMTLEPVMPAXXXXXXXXXXXFTRRFWWSLPLTVMVALLXMAGHSLQIFQGSV----QNWIQFALATPVTLLAGWAFFVR 863
            +R+ VCGM ++P        YQ     FCS  C+ KF+A P+ Y          +H   E S   I+ + + A +      +TCPMHPEIR+ GPG+CP CGM LEP++              TRRFW  L L   V +L M  H     + +V      W+Q  LA+PV L  GW FF R
Sbjct:   41 VRESVCGMVILPDKAHSSIRYQDHQLYFCSASCESKFKAHPDHYFTEDASEHHHHHDHHEVSPDKIKQSHRQAEKEISEGVWTCPMHPEIRRSGPGSCPVCGMALEPLVATASTGTSDELRDMTRRFWLGLLLAFPVLILEMGSHLFPALRNTVPPQYNTWLQLLLASPVVLWCGWPFFAR 221          
BLAST of EY736211 vs. ExPASy Swiss-Prot
Match: ATCU_RHILV (Copper-transporting P-type ATPase OS=Rhizobium leguminosarum bv. viciae GN=actP PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.788e-23
Identity = 73/183 (39.89%), Postives = 95/183 (51.91%), Query Frame = 3
Query:  354 AASPNDG-GLRDPVCGMAVI-PPSKFGESYQGQTYQFCSQKCQEKFRADPERYI-GNHPSAEPSSAAIEPTLQVATEFTCPMHPEIRQPGPGNCPKCGMTLEPV-MPAXXXXXXXXXXXFTRRFWWSLPLTVMVALLXMA---GHSLQIFQGSVQ-NWIQFALATPVTLLAGWAFFVRGIASV 878
            AA+P D    +DPVCGM+V    +++    +G+ + FCS  CQ KF ADP  Y  G  P+A+P+           T +TCPMHPE+    PG+CPKCGM LEP+ +P            F RR W S  L + +  L M    G  L+   G  Q  +I+  LATPV L A   FF R  ASV
Sbjct:   71 AAAPEDYLTAKDPVCGMSVDRSTARYFLKAEGEKFYFCSAACQAKFEADPAAYRDGQRPTAKPAPKG--------TLYTCPMHPEVVSDRPGDCPKCGMALEPMGIPPTDEGPNPELVDFVRRLWVSAILALPLLALGMGPMLGLPLREAIGEPQATFIELLLATPVVLWAALPFFRRAWASV 245          
The following BLAST results are available for this feature:
BLAST of EY736211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SILP_SALTY2.077e-2636.46Putative cation-transporting P-type ATPase OS=Salm... [more]
ATCU_RHILV4.788e-2339.89Copper-transporting P-type ATPase OS=Rhizobium leg... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-013-C09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736211 ID=EY736211; Name=EY736211; organism=Citrus sinensis; type=EST; length=880bp
CAAGAGTTCGCTATGCTCTGAGGCAGAGATCAGAGCAACACGCTCACACA
CGGGGTCTAGATCATGGATAAGCATCAGCATCCGGCTGGAAGCACCTCCC
CACCATTTTGGAGGCGCAAAACAGGCGTTGTACTGATCATGCTCATTGCG
ATCGGTGCCTTTTACGGGGTGCGGGAACATTTCACCCACGTTTATCCGTA
TTTGCCCTACCTCATCCTGTTGATCTGTCCATTGATGCATTTTTTTGGAC
ATGGACATGGCGGACATGACCATGGCGATCAGGCAGGAACCAACAAGGAA
GAGAAATAGCTATGCCCACTCCACCGAGCCACCACGATCACGGTCCCGCC
CACGCTGCCTCACCCAATGACGGTGGTCTACGCGACCCGGTGTGCGGTAT
GGCGGTTATACCTCCAAGTAAATTTGGCGAGTCTTACCAAGGACAGACGT
ATCAATTTTGTAGCCAGAAATGCCAAGAGAAATTTCGGGCAGATCCAGAA
CGCTACATTGGTAATCATCCCAGCGCTGAACCCAGCAGCGCCGCTATAGA
GCCCACGCTACAGGTAGCCACTGAGTTTACCTGTCCTATGCACCCGGAAA
TAAGACAGCCAGGGCCCGGCAATTGCCCTAAATGTGGCATGACATTAGAG
CCCGTCATGCCCGCGCTTGATGACGATGACNAACCCGAGCTCCTGGATTT
CACCCGCCGCTTTTGGTGGTCGCTGCCTTTAACCGTAATGGTGGCCCTTC
TANCCATGGCGGGTCACTCATTACAAATCTTCCAGGGTTCGGTTCAAAAC
TGGATCCAGTTCGCTCTTGCCACTCCGGTCACCTTATTGGCCGGGTGGGC
CTTTTTTGTAAGAGGCATAGCATCCGTTAG
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