EY736188

Overview
NameEY736188
Unique NameEY736188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY736188 vs. ExPASy Swiss-Prot
Match: GIGAN_ARATH (Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2)

HSP 1 Score: 333.569 bits (854), Expect = 8.407e-91
Identity = 181/271 (66.79%), Postives = 192/271 (70.85%), Query Frame = 1 
Query:   13 DYFRWCSGVMGKYAAGELKPPTIASSRGSGKHPQLMLSTPRWAVANGAGVILSVCDDELARYEXXXXXXXXXXXXXXXXXXXXXDEHLVAGLPALEPYARLFHRYYAFATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEEYATGIKLPRNWMHLHFLRAIGVAMSMRXXXXXXXXXXLLFRILSQPALLFPPLRQVDXXXXXXXXXXXXXXHAIGSR*RCXXXXXXXXXXXXXXHRCFVLMA--L*VEWRICTIWEAXYGLNP 819
            DYFRWCSGVMGKYAAGELKPPTIAS RGSGKHPQLM STPRWAVANGAGVILSVCDDE+ARYE                     DEHLVAGLPALEPYARLFHRYYA ATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAE+YA+G++LPRNWMHLHFLRAIG+AMSMR          LLFRILSQPALLFPPL QV+              ++   R +                   +L A    VEWRICTIWEA YGL P
Sbjct:  208 DYFRWCSGVMGKYAAGELKPPTIAS-RGSGKHPQLMPSTPRWAVANGAGVILSVCDDEVARYETATLTAVAVPALLLPPPTTSLDEHLVAGLPALEPYARLFHRYYAIATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEDYASGVRLPRNWMHLHFLRAIGIAMSMRAGVAADAAAALLFRILSQPALLFPPLSQVE---GVEIQHAPIGGYSSNYRKQIEVPAAEATIEATAQGIASMLCAHGPEVEWRICTIWEAAYGLIP 474
[Close]
BLAST of EY736188 vs. ExPASy Swiss-Prot
Match: GIGAN_ORYSJ (Protein GIGANTEA OS=Oryza sativa subsp. japonica GN=GI PE=2 SV=2)

HSP 1 Score: 315.464 bits (807), Expect = 2.369e-85
Identity = 171/273 (62.64%), Postives = 182/273 (66.67%), Query Frame = 1 
Query:   13 DYFRWCSGVMGKYAAG-ELKPPTIASSRGSGKHPQLMLSTPRWAVANGAGVILSVCDDELARYEXXXXXXXXXXXXXXXXXXXXXDEHLVAGLPALEPYARLFHRYYAFATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEEYATGIKLPRNWMHLHFLRAIGVAMSMRXXXXXXXXXXLLFRILSQPALLFPPLRQVDXXXXXXXXXXXXXXHAIGSR*RCXXXXXXXXXXXXXXHRCFVLMAL---*VEWRICTIWEAXYGLNP 819
            DYFRWC GVMGKYAAG ELKPPT A SRGSGKHPQLM STPRWAVANGAGVILSVCD+E+ARYE                     DEHLVAGLP LEPYARLFHRYYA ATPSATQRLL GLLEAPPSWAPDALDAAVQLVELLRAAE+Y +G++LP+NWMHLHFLRAIG AMSMR          LLFRILSQP LLFPPLR  +                + S  R                    ++      VEWRICTIWEA YGL P
Sbjct:  209 DYFRWCGGVMGKYAAGGELKPPTTAYSRGSGKHPQLMPSTPRWAVANGAGVILSVCDEEVARYETANLTAAAVPALLLPPPTTPLDEHLVAGLPPLEPYARLFHRYYAIATPSATQRLLFGLLEAPPSWAPDALDAAVQLVELLRAAEDYDSGMRLPKNWMHLHFLRAIGTAMSMRAGIAADTSAALLFRILSQPTLLFPPLRHAEGVELHHEPLGGY----VSSYKRQLEVPASEATIDATAQGIASMLCAHGPDVEWRICTIWEAAYGLLP 477
The following BLAST results are available for this feature:
BLAST of EY736188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GIGAN_ARATH8.407e-9166.79Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=... [more]
GIGAN_ORYSJ2.369e-8562.64Protein GIGANTEA OS=Oryza sativa subsp. japonica G... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-013-A05-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736188 ID=EY736188; Name=EY736188; organism=Citrus sinensis; type=EST; length=828bp
CACGCGTCCGGTGACTACTTCCGGTGGTGTAGTGGTGTTATGGGAAAATA
TGCAGCTGGTGAGCTCAAGCCACCTACAATAGCATCTTCTCGTGGATCTG
GAAAGCATCCTCAGCTCATGCTATCAACTCCAAGGTGGGCTGTTGCAAAT
GGTGCTGGTGTTATATTAAGTGTTTGTGACGACGAACTTGCTCGCTATGA
GACTGCTACTTTAACAGCTGCTGCTGTCCCGGCACTCCTGCTTCCTCCTG
CAACAACAGCATTGGATGAGCATCTAGTTGCCGGGCTTCCAGCACTTGAG
CCATATGCACGCTTATTTCATAGATATTATGCGTTCGCAACTCCAAGTGC
CACCCAGAGACTACTTCTTGGACTTCTAGAAGCGCCACCATCATGGGCTC
CGGATGCACTTGATGCTGCGGTGCAGCTTGTAGAACTTCTTCGGGCTGCT
GAGGAGTATGCAACTGGTATAAAACTTCCTCGGAACTGGATGCATTTGCA
TTTTTTGCGTGCAATCGGGGTTGCAATGTCCATGCGAGCGGGTATAGCTG
CTGATGCTGCTGCAGCTTTACTTTTTCGCATACTATCACAGCCTGCATTG
CTATTTCCCCCATTAAGGCAAGTTGATGGGAGTTGAAGTTCAACATGAAC
CTTTGGGGTGGTTACATTTCATGCTATAGGAAGCAGATAAAGGTGCCTGC
AGCTGAAGCAACTATTGAAGCCACTGCTCAAGGAATTGCATCGGTGCTTT
GTGCTCATGGCCCTGTAGGTGGAATGGAGAATCTGTACAATATGGGAAGC
ANCTTATGGCCTGAATCCCTAAAGTCCT
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