EY736146

Overview
NameEY736146
Unique NameEY736146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY736146_ssr489 microsatellite EY736146_ssr489:489..503. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY736146 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 3.862e-57
Identity = 112/211 (53.08%), Postives = 127/211 (60.19%), Query Frame = 3
Query:   57 MASWVLSECGLKPLPHIFPRPRTG-----INPSKARFLHSKKSLTDLKLPLVKC-SGDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAXGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLVHSSMLGPY 671
            MASWVLSECGL+PLP ++P+PRTG      NP+K RF     S TDL      C S    R++NW L+VSAPLRV  +E E+                        FDPGAPPPFKL+DIR AIPKHCWVKDPW+SM Y                        PLYW A  TMFWALFVLGHDCGHGSFSND KLNSVVGH++HSS+L PY
Sbjct:    1 MASWVLSECGLRPLPRVYPKPRTGHPLLNSNPTKLRF-----SRTDLGNGSSFCLSSGILREKNWALRVSAPLRVLQVEEEEENKEGERVINGGEE----------FDPGAPPPFKLSDIREAIPKHCWVKDPWRSMGYVVRDVAVVFGLAAVAAYFNNWVVWPLYWFAQSTMFWALFVLGHDCGHGSFSNDPKLNSVVGHILHSSILVPY 196          

HSP 2 Score: 32.7278 bits (73), Expect = 3.862e-57
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 1
Query:  706 EGDGHVENDEAWAPVSEK 759
            +  GHVENDE+W P+SEK
Sbjct:  208 QNHGHVENDESWHPLSEK 225          
BLAST of EY736146 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.116e-56
Identity = 111/208 (53.37%), Postives = 127/208 (61.06%), Query Frame = 3
Query:   57 MASWVLSECGLKPLPHIFPRPRTGI---NPSKARFLHSKKSLTDLKLPLVKCSGDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAXGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLVHSSMLGPY 671
            MA+W   +CGLKPL  + PRPRTG    + S+  FL + K +   K   ++C+    R+RNWGLKVSAPLRVA +E E                         FDPGAPPPF LADIRAAIPKHCWVKDPW+SMSY                        PLYWAA GTMFWALFVLGHDCGHGSFSN+ KLNSVVGHL+HSS+L PY
Sbjct:    1 MATWYHQKCGLKPLAPVIPRPRTGAALSSTSRVEFLDTNKVVAGPKFQPLRCN---LRERNWGLKVSAPLRVASIEEEQKSVDLTNGTNGVEHEKLPE-----FDPGAPPPFNLADIRAAIPKHCWVKDPWRSMSYVVRDVIAVFGLAAAAAYLNNWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSKLNSVVGHLLHSSILVPY 200          

HSP 2 Score: 28.8758 bits (63), Expect = 1.116e-56
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  715 GHVENDEAWAPVSEK 759
            GH ENDE+W P+ EK
Sbjct:  215 GHAENDESWHPLPEK 229          
BLAST of EY736146 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 4.893e-51
Identity = 104/209 (49.76%), Postives = 117/209 (55.98%), Query Frame = 3
Query:   60 ASWVLSECGLKPLPHIFPRPRTGI-----NPSKARFLHSKKSLTDLKLPLVKCSGDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAXGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLVHSSMLGPY 671
            A WVLSECGL+PLP I+ RPR G      N  K R L   KS  +L       S   S+  NW L V+ P+ V+ + GED                        FD GAPPPF LADIRAAIPKHCWVK+PW+SMSY                        PLYW   GTMFWALFVLGHDCGHGSFSN+ KLNSVVGHL+HSS+L PY
Sbjct:    3 AGWVLSECGLRPLPRIYSRPRIGFTSKTTNLLKLRELPDSKSY-NLCSSFKVSSWSNSKQSNWALNVAVPVNVSTVSGEDDREREEFNGIVNVDEGKGEF----FDAGAPPPFTLADIRAAIPKHCWVKNPWRSMSYVLRDVVVVFGLAAVAAYFNNWVAWPLYWFCQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPY 206          

HSP 2 Score: 32.7278 bits (73), Expect = 4.893e-51
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 1
Query:  706 EGDGHVENDEAWAPVSEK 759
            +  GHVENDE+W P+SEK
Sbjct:  218 QNHGHVENDESWHPLSEK 235          
BLAST of EY736146 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 6.929e-50
Identity = 108/215 (50.23%), Postives = 121/215 (56.28%), Query Frame = 3
Query:   57 MASWVLSECGLKPLPHIFPRPRTGI--NPSKARFLHSKKSLTDLKLPLVKCSGDFSRD---RNWGLKVSAPLRV-----APLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAXGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLVHSSMLGPY 671
            MA+ VLSECG++PLP I+  PR+    N +K R   S  S      PL    G  SRD   RNW L VS PL       +PLE ++                        FDPGAPPPF LADIRAAIPKHCWVK+PWKS+SY                        PLYW A GTMFWALFVLGHDCGHGSFSND KLNSVVGHL+HSS+L PY
Sbjct:    1 MANLVLSECGIRPLPRIYTTPRSNFLSNNNKFRPSLSSSSYKTSSSPL--SFGLNSRDGFTRNWALNVSTPLTTPIFEESPLEEDNKQR---------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAAGAAYLNNWIVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGHLLHSSILVPY 192          

HSP 2 Score: 32.7278 bits (73), Expect = 6.929e-50
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 1
Query:  706 EGDGHVENDEAWAPVSEK 759
            +  GHVENDE+W P+SEK
Sbjct:  204 QNHGHVENDESWHPMSEK 221          
BLAST of EY736146 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 8.863e-47
Identity = 96/205 (46.83%), Postives = 108/205 (52.68%), Query Frame = 3
Query:   57 MASWVLSECGLKPLPHIFPRPRTGINPSKARFLHSKKSLTDLKLPLVKCSGDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAXGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLVHSSMLGPY 671
            MAS VLSECG +PLP  +P+  T    +          L      L    G +S+ RNW L V+ PL       E+                        FDPGAPPPF LADIRAAIPKHCWVK+PW SMSY                        PLYW A GTMFWALFVLGHDCGHGSFSND +LNSV GHL+HSS+L PY
Sbjct:    1 MASSVLSECGFRPLPRFYPKHTTSFASNPKPTFKFNPPLKPPSSLLNSRYGFYSKTRNWALNVATPLTTLQSPSEEDTER--------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVAAYFNNWLLWPLYWFAQGTMFWALFVLGHDCGHGSFSNDPRLNSVAGHLLHSSILVPY 185          

HSP 2 Score: 28.8758 bits (63), Expect = 8.863e-47
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  706 EGDGHVENDEAWAPVSE 756
            +  GHVENDE+W P+ E
Sbjct:  197 QNHGHVENDESWHPLPE 213          
BLAST of EY736146 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 5.995e-42
Identity = 83/154 (53.90%), Postives = 89/154 (57.79%), Query Frame = 3
Query:  225 RNWGLKVSAPLRV-----APLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAXGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLVHSSMLGPY 671
            RNW L V+ PL V      P+E E                         FDPGAPPPF LADIRAAIPKHCWVK+PWKSMSY                        PLYW A GTMFWALFVLGHDCGHGSFSND +LNSVVGHL+HSS+L PY
Sbjct:   17 RNWALNVTTPLTVDSSSSPPIEEEPKTQR--------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWKSMSYVVRELAIVFALAAGAAYLNNWLVWPLYWIAQGTMFWALFVLGHDCGHGSFSNDPRLNSVVGHLLHSSILVPY 150          

HSP 2 Score: 32.7278 bits (73), Expect = 5.995e-42
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 1
Query:  706 EGDGHVENDEAWAPVSEK 759
            +  GHVENDE+W P+SEK
Sbjct:  162 QNHGHVENDESWHPMSEK 179          
BLAST of EY736146 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 7.948e-35
Identity = 64/105 (60.95%), Postives = 70/105 (66.67%), Query Frame = 3
Query:  357 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAXGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLVHSSMLGPY 671
            FDPGAPPPFK+ADIRAAIPKHCW K   +S+SY                        PLYW A GTMFWALFVLGHDCGHGSFSN  KLNS VGH++HS +L PY
Sbjct:   22 FDPGAPPPFKIADIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAISFNSWFFWPLYWPAQGTMFWALFVLGHDCGHGSFSNSSKLNSFVGHILHSLILVPY 126          

HSP 2 Score: 30.0314 bits (66), Expect = 7.948e-35
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  706 EGDGHVENDEAWAPVSEK 759
            +  GHVE DE+W P++EK
Sbjct:  138 QNHGHVEKDESWVPLTEK 155          
BLAST of EY736146 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.454e-33
Identity = 62/105 (59.05%), Postives = 70/105 (66.67%), Query Frame = 3
Query:  357 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAXGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLVHSSMLGPY 671
            FDP A PPFK+ DIRAAIPKHCWVK P +SMSY                        PLYWAA GT+FWA+FVLGHDCGHGSFS+   LNSVVGH++HS +L PY
Sbjct:   26 FDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDIIAVAALAIAAVYVDSWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPY 130          

HSP 2 Score: 30.4166 bits (67), Expect = 1.454e-33
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  706 EGDGHVENDEAWAPVSEK 759
            +  GHVENDE+W P+ E+
Sbjct:  142 QNHGHVENDESWVPLPER 159          
BLAST of EY736146 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.894e-33
Identity = 61/105 (58.10%), Postives = 69/105 (65.71%), Query Frame = 3
Query:  357 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAXGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLVHSSMLGPY 671
            FDP A PPFK+ DIRAAIPKHCWVK P +SMSY                        PLYW A GT+FWA+FVLGHDCGHGSFS+   LNSVVGH++HS +L PY
Sbjct:   23 FDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVTRDIFAVAALAMAAVYFDSWFLWPLYWVAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPY 127          

HSP 2 Score: 31.5722 bits (70), Expect = 1.894e-33
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  706 EGDGHVENDEAWAPVSEK 759
            +  GHVENDE+W P+ EK
Sbjct:  139 QNHGHVENDESWVPLPEK 156          
BLAST of EY736146 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 9.245e-33
Identity = 60/105 (57.14%), Postives = 71/105 (67.62%), Query Frame = 3
Query:  357 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAXGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLVHSSMLGPY 671
            FDP APPPF+LA+IR  IPKHCWVKDP +S+SY                        PLYWA  GTMFWA+FVLGHDCGHGSFS+   LN+VVGH++HS++L PY
Sbjct:   22 FDPSAPPPFRLAEIRNVIPKHCWVKDPLRSLSYVVRDVIFVATLIGIAIHLDSWLFYPLYWAIQGTMFWAIFVLGHDCGHGSFSDSQLLNNVVGHILHSAILVPY 126          

HSP 2 Score: 26.5646 bits (57), Expect = 9.245e-33
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  706 EGDGHVENDEAWAPVSEK 759
            +  G+VE DE+W P+ EK
Sbjct:  138 QNHGNVETDESWVPMPEK 155          
The following BLAST results are available for this feature:
BLAST of EY736146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
FAD3C_SESIN3.862e-5753.08Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
FAD3C_SOYBN1.116e-5653.37Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD3C_RICCO4.893e-5149.76Omega-3 fatty acid desaturase, chloroplastic OS=Ri... [more]
FAD3C_ARATH6.929e-5050.23Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD3D_ARATH8.863e-4746.83Temperature-sensitive omega-3 fatty acid desaturas... [more]
FAD3C_BRANA5.995e-4253.90Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]
FAD3E_PHAAU7.948e-3560.95Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_ARATH1.454e-3359.05Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_BRANA1.894e-3358.10Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_TOBAC9.245e-3357.14Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-E04-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736146 ID=EY736146; Name=EY736146; organism=Citrus sinensis; type=EST; length=832bp
CACGCGTCCGCTATCTTCTGTCTCTCTTAACCCTTTGAGGATTTTTCTGA
GACCCAATGGCGAGTTGGGTTCTTTCAGAATGTGGCTTAAAGCCTCTGCC
TCATATTTTTCCGAGGCCAAGGACTGGAATCAATCCCTCAAAGGCCAGGT
TTTTGCACTCAAAAAAGAGTTTAACAGATCTAAAGCTCCCATTAGTTAAA
TGTTCGGGTGATTTTTCTAGAGACAGGAACTGGGGTCTTAAAGTTAGTGC
TCCACTGAGGGTGGCACCACTTGAGGGGGAGGATGAAGAAGAGAGAATCA
ACGGTGTTAATGGGATTGGAAATAACAAAGGAGTCGAAGAAGAAGAGGGA
TCTGAATTTGATCCTGGGGCTCCTCCTCCTTTCAAGCTAGCTGATATTAG
AGCTGCTATTCCAAAGCATTGTTGGGTTAAGGATCCTTGGAAGTCTATGA
GCTATGTTGTTAGAGATGTTGTGGTGGTTTTTGGCTTGGCTGCTGCTGCT
GCTTATTTGAACAATTGGGTTGTTTGGCCTTTGTACTGGGCTGCTCANGG
AACCATGTTTTGGGCTCTTTTTGTGCTCGGTCATGATTGTGGTCATGGAA
GCTTTTCAAATGATCACAAGTTGAATAGTGTGGTGGGGCATCTGGTGCAT
TCTTCAATGCTGGGTCCTTATCATGGATGGAGAATCAGGCACGGGACTCA
TCGTCGAAGGCGATGGGCATGTTGAAAATGATGAAGCCTGGGCACCGGTG
TCTGAGAAAGATGAAGGGAGTTGGATAGTGGAACAGGATTTGGGACATTC
GAAATCCCTTGTCCTGGGGTTGAGTGCCGCTT
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