EY736144

Overview
NameEY736144
Unique NameEY736144
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736144 vs. ExPASy Swiss-Prot
Match: ATPBM_HEVBR (ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis GN=ATPB PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.606e-29
Identity = 67/108 (62.04%), Postives = 78/108 (72.22%), Query Frame = 3
Query:  144 SPAATRRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTGLEVVDPSVQLVLDVAQDMASGVGKTI 467
            SP++  RASPYG+LL+R +EY                     GGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILT LEV+D S++LVL+VAQ M  G+ +TI
Sbjct:   35 SPSSKSRASPYGYLLTRAAEYATSAAAAAPPQPPPAKPEGGKGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTSLEVLDHSIRLVLEVAQHMGEGMVRTI 142          
BLAST of EY736144 vs. ExPASy Swiss-Prot
Match: ATPBM_MAIZE (ATP synthase subunit beta, mitochondrial OS=Zea mays GN=ATPB PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.593e-24
Identity = 63/114 (55.26%), Postives = 75/114 (65.79%), Query Frame = 3
Query:  144 SPAATR------RASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTGLEVVDPSVQLVLDVAQDMASGVGKTI 467
            SPAA R      R SP G+L +R + Y               +   K GGGKITDEFTG GAIGQVCQVIGAVVDVRFDEGLPPILT LEV+D +++LVL+VAQ +   + +TI
Sbjct:   21 SPAAPRPRAPPHRPSPAGYLFNRAAAYASSAAAQAAPATPPPA-TGKTGGGKITDEFTGAGAIGQVCQVIGAVVDVRFDEGLPPILTALEVLDNNIRLVLEVAQHLGENMVRTI 133          
BLAST of EY736144 vs. ExPASy Swiss-Prot
Match: ATPBM_ORYSJ (ATP synthase subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPB PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 6.218e-23
Identity = 57/102 (55.88%), Postives = 70/102 (68.63%), Query Frame = 3
Query:  162 RASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTGLEVVDPSVQLVLDVAQDMASGVGKTI 467
            R SP G+L +R + Y               +  K  GGGKITDEFTG GA+GQVCQVIGAVVDVRFDEGLPPILT LEV+D +++LVL+VAQ +   + +TI
Sbjct:   32 RPSPSGYLFNRAAAYATAAAAKEAAPPAPATG-KATGGGKITDEFTGAGAVGQVCQVIGAVVDVRFDEGLPPILTALEVLDHNIRLVLEVAQHLGENMVRTI 132          
BLAST of EY736144 vs. ExPASy Swiss-Prot
Match: ATPBM_NICPL (ATP synthase subunit beta, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPB PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.000e-21
Identity = 59/108 (54.63%), Postives = 71/108 (65.74%), Query Frame = 3
Query:  153 ATRRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGG---GKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTGLEVVDPSVQLVLDVAQDMASGVGKTI 467
            A+ RASP G LL+R  +Y               S   K G    GKITDEFTG G+IG+VCQVIGAVVDVRFDEGLPPILT LEV+D  ++LVL+VAQ +   + +TI
Sbjct:   37 ASSRASPKGFLLNRAVQYATSAAAPASQP----STPPKSGSEPSGKITDEFTGAGSIGKVCQVIGAVVDVRFDEGLPPILTALEVLDNQIRLVLEVAQHLGENMVRTI 140          
BLAST of EY736144 vs. ExPASy Swiss-Prot
Match: ATPBM_DAUCA (ATP synthase subunit beta, mitochondrial OS=Daucus carota GN=ATPB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.659e-17
Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 3
Query:  270 GGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTGLEVVDPSVQLVLDVAQDMASGVGKTI 467
            G G ITDE TG GAIGQVCQ+IGAVVDV+F+EGLPPI+T LEV+D  ++LVL+VA  +     +TI
Sbjct:   66 GKGTITDEKTGAGAIGQVCQIIGAVVDVKFEEGLPPIMTALEVIDFEIRLVLEVAPSLGENTVRTI 131          
BLAST of EY736144 vs. ExPASy Swiss-Prot
Match: ATPBN_ARATH (ATP synthase subunit beta-2, mitochondrial OS=Arabidopsis thaliana GN=At5g08690 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.136e-16
Identity = 56/128 (43.75%), Postives = 72/128 (56.25%), Query Frame = 3
Query:  144 SPAATRRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFD--EGLPPILTGLEVVDPSVQLVLDVAQDMASGVGKTI------GRVWGRALF*AG 503
            SP+  R A+P  +LL RV+EY               S       GK T ++ GKGAIG+VCQVIGA+VDVRF+  EGLPPI+T LEV D   +LVL+V+  +   V +TI      G V GR +   G
Sbjct:   31 SPSPARHAAPCSYLLGRVAEYATSSPASSAAP----SSAPAKDEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 154          
BLAST of EY736144 vs. ExPASy Swiss-Prot
Match: ATPBM_ARATH (ATP synthase subunit beta-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08670 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.136e-16
Identity = 56/128 (43.75%), Postives = 72/128 (56.25%), Query Frame = 3
Query:  144 SPAATRRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFD--EGLPPILTGLEVVDPSVQLVLDVAQDMASGVGKTI------GRVWGRALF*AG 503
            SP+  R A+P  +LL RV+EY               S       GK T ++ GKGAIG+VCQVIGA+VDVRF+  EGLPPI+T LEV D   +LVL+V+  +   V +TI      G V GR +   G
Sbjct:   31 SPSPARHAAPCSYLLGRVAEYATSSPASSAAP----SSAPAKDEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 154          
BLAST of EY736144 vs. ExPASy Swiss-Prot
Match: ATPBO_ARATH (ATP synthase subunit beta-3, mitochondrial OS=Arabidopsis thaliana GN=At5g08680 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.316e-16
Identity = 56/130 (43.08%), Postives = 71/130 (54.62%), Query Frame = 3
Query:  138 VFSPAATRRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFD--EGLPPILTGLEVVDPSVQLVLDVAQDMASGVGKTI------GRVWGRALF*AG 503
            + SP     A+P G LL RV+EY               S       GK T ++ GKGAIG+VCQVIGA+VDVRF+  EGLPPI+T LEV D   +LVL+V+  +   V +TI      G V GR +   G
Sbjct:   32 LLSPGPAHGAAPCGTLLGRVAEYSTSSPANSAAP----SSAPAKDEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 157          
The following BLAST results are available for this feature:
BLAST of EY736144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
ATPBM_HEVBR2.606e-2962.04ATP synthase subunit beta, mitochondrial OS=Hevea ... [more]
ATPBM_MAIZE9.593e-2455.26ATP synthase subunit beta, mitochondrial OS=Zea ma... [more]
ATPBM_ORYSJ6.218e-2355.88ATP synthase subunit beta, mitochondrial OS=Oryza ... [more]
ATPBM_NICPL2.000e-2154.63ATP synthase subunit beta, mitochondrial OS=Nicoti... [more]
ATPBM_DAUCA6.659e-1763.64ATP synthase subunit beta, mitochondrial OS=Daucus... [more]
ATPBN_ARATH1.136e-1643.75ATP synthase subunit beta-2, mitochondrial OS=Arab... [more]
ATPBM_ARATH1.136e-1643.75ATP synthase subunit beta-1, mitochondrial OS=Arab... [more]
ATPBO_ARATH4.316e-1643.08ATP synthase subunit beta-3, mitochondrial OS=Arab... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-E02-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736144 ID=EY736144; Name=EY736144; organism=Citrus sinensis; type=EST; length=877bp
CCACGCGTCCGCGGACGCGTGGGCTCATTCTCTCAACATTGAAGCCCTGA
CCAATGGCTTCACGTAGACTCTTATCATCTCTCCTTCGCTCGTCTGTCCG
CCGATCTCCCTCCAAATCTTCGCTTTCTAACTCATCTGTGTTCTCCCCTG
CCGCCACGCGCCGCGCGTCTCCTTATGGGCACCTCCTCTCGCGCGTCTCA
GAGTACGCGACCTCAGCAGCCGCCACTGCCCCACCGGCACAGACTCCGAA
GTCGGATGTAAAGAAAGGCGGCGGTGGTAAAATCACCGATGAGTTTACTG
GAAAGGGCGCGATCGGTCAGGTCTGTCAGGTCATCGGTGCCGTCGTTGAT
GTCAGATTTGACGAGGGGTTGCCTCCGATTTTGACCGGGCTTGAAGTGGT
AGATCCCTCCGTGCAGTTAGTGCTTGATGTGGCTCAGGACATGGCTAGCG
GTGTGGGTAAGACCATTGGCCGGGTCTGGGGCCGCGCGCTCTTTTAGGCA
GGCATACACAGAACAAGGATGAAATTGACTACACGTCCCCTCAAGGCCAT
AGTGCGCGGTGGTCGGGCGAGGGGGGCGTCGGGGATGGGGGGGGGGGGTG
AGTCATGTGCGGCGCCCGGCGCCGGTGACGGGCCCGGTCGGCGAGCGCGC
TCCAGCGGGGGGGTGCGGACAGGGGGAGGAGACGGGGTGGGGCGGGGCCG
GGGCGGGGGCCGGTGGGCGGGGGGGAGAGCTTGGTCGCTACAGCTCTGAC
ACGTCGTTCCCTCCCCGCTGCGGGGAGGAGGTGTGAATCTAAGTAGAGGG
GACAGAGGGGCGAGGGGAGCGGCGGGGGGGGGAGGGGGTGGCGTGTGGGT
GTGGNGGGGCGGCGGAGGGGGAGCGGG
back to top