EY736125

Overview
NameEY736125
Unique NameEY736125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY736125_ssr214 microsatellite EY736125_ssr214:214..225. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig890 contig Csv1_Contig890:582..1453. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY736125 vs. ExPASy Swiss-Prot
Match: HDT2_MAIZE (Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.708e-21
Identity = 50/87 (57.47%), Postives = 63/87 (72.41%), Query Frame = 2
Query:  419 TPKKAESSKKRPVESASKTYVPDKKAXFVTP--QKTEEKKGVSHIATPHPSKKSAKTPANNDQTKQQPHKSGGSFPCKSCNRSFTTE 673
            TPKK E+ KKR  E+A KT + DKKA   TP  QKT  KKG +H+ATPHP+K   KTPANND+  ++  KSGGS PCKSC+++F +E
Sbjct:  205 TPKKPEAGKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK--GKTPANNDKLTEKSPKSGGSVPCKSCSKTFNSE 289          

HSP 2 Score: 22.3274 bits (46), Expect = 1.708e-21
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  681 LHSHTKAKHGA 713
            L +H+KAKHGA
Sbjct:  292 LQAHSKAKHGA 302          
BLAST of EY736125 vs. ExPASy Swiss-Prot
Match: HDT1_SOLCH (Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.416e-19
Identity = 53/102 (51.96%), Postives = 66/102 (64.71%), Query Frame = 2
Query:  419 TPKKAESSKKRPVESASKTYVPDKKAXFVTPQKTEEKKGVSHIATPHPSKKSAKTPANNDQTKQQPHKSGGSFPCKSCNRSFTTERWFAFSYKSQARCSSMK 724
            TPKKAE +K+R  +SA+KT V DKKA   TPQKT+ KKG  H+ATPHPSK+++KTP           KS GS  CK CNRSF +E   A    S+A+ S+ K
Sbjct:  181 TPKKAEPAKRRKADSATKTPVTDKKAKLTTPQKTDGKKGGGHVATPHPSKQASKTP-----------KSAGSHHCKPCNRSFGSEG--ALDSHSKAKHSAGK 269          
BLAST of EY736125 vs. ExPASy Swiss-Prot
Match: HDT3_ARATH (Histone deacetylase HDT3 OS=Arabidopsis thaliana GN=HDT3 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 7.225e-19
Identity = 46/90 (51.11%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  419 TPKKAESSKKRPVE-SASKTYVPDKKAXFVTPQKTEEKKGVSHIATPHPSKKSAKTPANND----QTKQQPHKSGGSFPCKSCNRSFTTE 673
            TPKK E  KKR  E ++SK    +KKA FVTPQKT+ KK   H+ATPHPSK++ K            +QQ  KS G+F CKSC R+FT+E
Sbjct:  190 TPKKPEEPKKRSAEPNSSKNPASNKKAKFVTPQKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSKQQQTPKSAGAFGCKSCTRTFTSE 279          

HSP 2 Score: 26.1794 bits (56), Expect = 7.225e-19
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = 3
Query:  678 GLHSHTKAKHGAPA 719
            GL SHTKAKH A A
Sbjct:  281 GLQSHTKAKHSAAA 294          
BLAST of EY736125 vs. ExPASy Swiss-Prot
Match: HDT1_SOYBN (Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.194e-17
Identity = 45/83 (54.22%), Postives = 53/83 (63.86%), Query Frame = 2
Query:  425 KKAESSKKRPVESASKTYVPDKKAXFVTPQKTEEKKGVSHIATPHPSKKSAKTPANNDQTKQQPHKSGGSFPCKSCNRSFTTE 673
            KK +  KKRP ESA+KT +  KKA   TP+KT+ KK V H+ATPHPSKK  KTP   + TK Q   S G   C SC +SFT E
Sbjct:  203 KKVDQGKKRPNESAAKTPISAKKAKTATPEKTDGKKSV-HVATPHPSKKGGKTP---NSTKGQTPNSAGQLSCASCKKSFTNE 281          

HSP 2 Score: 22.3274 bits (46), Expect = 2.194e-17
Identity = 8/13 (61.54%), Postives = 9/13 (69.23%), Query Frame = 3
Query:  672 KGGLHSHTKAKHG 710
            + GL  H KAKHG
Sbjct:  281 EAGLQQHKKAKHG 293          
BLAST of EY736125 vs. ExPASy Swiss-Prot
Match: HDT1_MAIZE (Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.320e-16
Identity = 54/113 (47.79%), Postives = 70/113 (61.95%), Query Frame = 2
Query:  419 TPKKAESSKKRPVESAS-KTYVPDKKAXFVTP--QKTEEKKGVS-HIATPHPSKKSAKTPANNDQTKQQPH---KSGGSFPCKSCNRSFTTERWFAFSYKSQARCSSMKDGVE 736
            TPKK E  KKRP ES+  KT + DKKA   TP  QKT  KKG + H+ATPHP+K   KT  NND++ + P    KSGGS PCK C++SF +E   A    S+A+  + +  V+
Sbjct:  199 TPKKPEVGKKRPAESSVLKTPLSDKKAKVATPSSQKTGGKKGAAVHVATPHPAK--GKTIVNNDKSVKSPKSAPKSGGSVPCKPCSKSFISET--ALQAHSRAKMGASESQVQ 307          
BLAST of EY736125 vs. ExPASy Swiss-Prot
Match: HDT3_MAIZE (Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.893e-13
Identity = 46/90 (51.11%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  419 TPKKAESSKKRPVESAS-KTYVPDKKAXFVTP--QKTEEKKGVS-HIATPHPSKKSAKTPANNDQTKQQPHKSGGS-FPCKSCNRSFTTE 673
            TPKK E  KKR  ES+  KT + DKKA   TP  QKT  KKG + H+ATPHP+K   KT  NND++ + P  +  S  PCKSC++SF +E
Sbjct:  199 TPKKPEVGKKRAAESSVLKTPLSDKKAKVATPSSQKTGGKKGAAVHVATPHPAK--GKTIVNNDKSVKSPKSAPKSGVPCKSCSKSFISE 286          
BLAST of EY736125 vs. ExPASy Swiss-Prot
Match: HDT2_ARATH (Histone deacetylase HDT2 OS=Arabidopsis thaliana GN=HDT2 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.866e-11
Identity = 41/77 (53.25%), Postives = 48/77 (62.34%), Query Frame = 2
Query:  419 TPKKAES-SKKRPVESASKTYVPDKKAXFV-----TPQKTEEKKGVSHIATPHPSKKSAKTPANNDQTKQQPHKSGG 631
            TPKK E  +KKRP ES SKT V  KKA        TPQKTEEKK   H ATPHP+KK  K+P N +Q+ +   +S G
Sbjct:  199 TPKKPEPINKKRPNESVSKTPVSGKKAKPAAAPASTPQKTEEKKKGGHTATPHPAKKGGKSPVNANQSPKSGGQSSG 275          
The following BLAST results are available for this feature:
BLAST of EY736125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
HDT2_MAIZE1.708e-2157.47Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 ... [more]
HDT1_SOLCH5.416e-1951.96Histone deacetylase HDT1 OS=Solanum chacoense GN=H... [more]
HDT3_ARATH7.225e-1951.11Histone deacetylase HDT3 OS=Arabidopsis thaliana G... [more]
HDT1_SOYBN2.194e-1754.22Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE... [more]
HDT1_MAIZE7.320e-1647.79Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 ... [more]
HDT3_MAIZE9.893e-1351.11Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 ... [more]
HDT2_ARATH1.866e-1153.25Histone deacetylase HDT2 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-C05-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736125 ID=EY736125; Name=EY736125; organism=Citrus sinensis; type=EST; length=871bp
CACGCGTCCGAATTCTGACTCTGATGAAGACAAAATGGATATTCGGCTTG
TTAGTAATGGGAAACCCGAGTTACAGGCCAAACCTCTTTCTGAAAAGCCC
ATTGCTGTCGAGCCCAGTGCTTCCACTGCTAAGCAGAATAAGAAGGATGT
TAAACCCAAACTGAAGGCCGATGGTAGTGATTCTGATGACAGTGATTTGA
ACACTTCATCCTCTGATGATGATGAGACCAGTGATGATGAGATTTCCTTG
AGAAAGAATTTCATGCCCTATACCTGAGAAGGGTTAACCTGGCAGAATCC
AAATCTCGTTAATCGTGATGGTAGTAGTGATGAGAGTAGTGGAGAGCTTG
ATGAAAGCGATGACGACGAAGATGATGAAGGCACTGATGAGAGCGAAAGT
GATGATGAAGATGAGGAGACCCCAAAGAAGGCTGAATCAAGCAAGAAGAG
ACCTGTGGAGTCTGCTTCAAAAACCTATGTTCCTGACAAGAAGGCTANAT
TTGTCACACCTCAAAAGACAGAGGAGAAGAAAGGGGTCAGTCACATTGCA
ACTCCACACCCCTCAAAGAAGTCTGCTAAGACTCCTGCTAACAATGACCA
GACAAAGCAGCAGCCTCATAAATCAGGCGGTTCATTTCCCTGCAAATCAT
GCAATAGGTCATTTACCACTGAAAGGTGGTTTGCATTCTCATACAAAAGC
CAAGCACGGTGCTCCAGCATGAAAGATGGGGTTGAAACGGGCTTTTGTGC
TTAGGTTACCTTATGCTTCTCAGGGAGGAATTTGGGGAAAAAAAAATGGG
AATGGATAGTTAAATGAGGACAGGAACTAATATGGGACTATCTAAAATGA
ATTGGGGGTCTACGGGGTTTA
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