EY736040

Overview
NameEY736040
Unique NameEY736040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736040 vs. ExPASy Swiss-Prot
Match: SODF_SOYBN (Superoxide dismutase [Fe], chloroplastic OS=Glycine max GN=SODB PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.705e-27
Identity = 64/151 (42.38%), Postives = 84/151 (55.63%), Query Frame = 1
Query:  220 KIIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQIELQK*TNLYGMGNSYSQQQLT*SVSWSALSFVWNHDFFWESMQPGGGDIPKYGVLEQMEKDFGSFTNFTEK 672
            K+ A + LK PPY L+ LEP MS++TLE HWG+ H+ YVE L K +   + L G +L+E++  SYN G+ LP FNNA Q                                VWNHDFFWE M+PGGG  P   +LE +E+DFGSF  F ++
Sbjct:   22 KVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHKTYVENLKKQVVGTE-LDGKSLEEIIVTSYNKGDILPAFNNAAQ--------------------------------VWNHDFFWECMKPGGGGKPSGELLELIERDFGSFVKFLDE 139          

HSP 2 Score: 21.9422 bits (45), Expect = 3.705e-27
Identity = 10/27 (37.04%), Postives = 13/27 (48.15%), Query Frame = 3
Query:  657 KFHREGIEAGLPLFGSGYVWLVLKRER 737
            KF  E   A    FGSG+ WL  +  +
Sbjct:  135 KFLDEFKAAAATQFGSGWAWLAYRARK 161          
BLAST of EY736040 vs. ExPASy Swiss-Prot
Match: SODF_ARATH (Superoxide dismutase [Fe], chloroplastic OS=Arabidopsis thaliana GN=SODB PE=1 SV=4)

HSP 1 Score: 117.472 bits (293), Expect = 3.720e-27
Identity = 62/153 (40.52%), Postives = 84/153 (54.90%), Query Frame = 1
Query:  214 ASKIIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQIELQK*TNLYGMGNSYSQQQLT*SVSWSALSFVWNHDFFWESMQPGGGDIPKYGVLEQMEKDFGSFTNFTEK 672
            +S + A Y LK PP+ LDALEP+MSK+TLE HWG+ HR YV+ L K +   + L G  L+ ++  +YN+G+ LP FNNA Q                                 WNH+FFWESM+PGGG  P   +L  +E+DF S+  F E+
Sbjct:    4 SSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTE-LEGKPLEHIIHSTYNNGDLLPAFNNAAQ--------------------------------AWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEE 123          

HSP 2 Score: 25.7942 bits (55), Expect = 3.720e-27
Identity = 11/29 (37.93%), Postives = 15/29 (51.72%), Query Frame = 3
Query:  657 KFHREGIEAGLPLFGSGYVWLVLKREREK 743
            KF+ E   A    FG+G+ WL    E+ K
Sbjct:  119 KFYEEFNAAAATQFGAGWAWLAYSNEKLK 147          
BLAST of EY736040 vs. ExPASy Swiss-Prot
Match: SODF_NICPL (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.733e-27
Identity = 66/173 (38.15%), Postives = 91/173 (52.60%), Query Frame = 1
Query:  235 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQIELQK*TNLYGMGNSYSQQQLT*SVSWSALSFVWNHDFFWESMQPGGGDIPKYGVLEQMEKDFGSFTNFTEKV*KLASHYLALAMFGLF*RGKEKRLAV 753
            + L+ PPY +DALEP+MS RT E HWG+ HR YV+ LNK +   + L G TL++++ V+YN G PLP FNNA Q                                 WNH FFWESM+P GG  P   +LE + +DFGS+  F ++    A+         L  + +EK+LA+
Sbjct:    2 FELQPPPYPMDALEPHMSSRTFEFHWGKHHRAYVDNLNKQIDGTE-LDGKTLEDIILVTYNKGAPLPAFNNAAQ--------------------------------AWNHQFFWESMKPNGGGEPSGELLELINRDFGSYDAFVKEFKAAAATQFGSGWAWLAYKPEEKKLAL 141          
BLAST of EY736040 vs. ExPASy Swiss-Prot
Match: SODF_SYNY3 (Superoxide dismutase [Fe] OS=Synechocystis sp. (strain PCC 6803) GN=sodB PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 2.832e-15
Identity = 45/145 (31.03%), Postives = 62/145 (42.76%), Query Frame = 1
Query:  235 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQIELQK*TNLYGMGNSYSQQQLT*SVSWSALSFVWNHDFFWESMQPGGGDIPKYGVLEQMEKDFGSFTNFTE 669
            Y L   PY   ALEP +SK TLE H  + H  YV   N  +A  D L   ++++++K      +   +FNNA Q                                 WNH F+W  M+PGGG  P   + +++  DFGSF  F E
Sbjct:    3 YALPNLPYDYTALEPCISKSTLEFHHDKHHAAYVNNFNNAVAGTD-LDNQSIEDVIKAVAGDASKAGIFNNAAQ--------------------------------AWNHSFYWNCMKPGGGGQPSGALADKINADFGSFDAFVE 114          

HSP 2 Score: 25.7942 bits (55), Expect = 2.832e-15
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 3
Query:  678 EAGLPLFGSGYVWLVL 725
            +AG   FGSG+ WLVL
Sbjct:  118 QAGATQFGSGWAWLVL 133          
BLAST of EY736040 vs. ExPASy Swiss-Prot
Match: SODF_SYNE7 (Superoxide dismutase [Fe] OS=Synechococcus elongatus (strain PCC 7942) GN=sodB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.887e-14
Identity = 43/143 (30.07%), Postives = 61/143 (42.66%), Query Frame = 1
Query:  235 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQIELQK*TNLYGMGNSYSQQQLT*SVSWSALSFVWNHDFFWESMQPGGGDIPKYGVLEQMEKDFGSFTNF 663
            Y L   P+   AL PY++K TLE H  + H  YV   N +  KD  L G  ++ ++K      +   +FNNA Q                                 WNH F+W S++P GG  P   + +++  DFGSF NF
Sbjct:    3 YELPALPFDYTALAPYITKETLEFHHDKHHAAYVNNYN-NAVKDTDLDGQPIEAVIKAIAGDASKAGLFNNAAQ--------------------------------AWNHSFYWNSIKPNGGGAPTGALADKIAADFGSFENF 112          

HSP 2 Score: 25.0238 bits (53), Expect = 3.887e-14
Identity = 16/47 (34.04%), Postives = 21/47 (44.68%), Query Frame = 3
Query:  660 FHREGIEAGLPLFGSGYVWLVLKREREKACCG*NLGCVTRRGWSDVP 800
            F  E  +A    FGSG+ WLVL     K         +T+ G +D P
Sbjct:  112 FVTEFKQAAATQFGSGWAWLVLDNGTLK---------ITKTGNADTP 149          
BLAST of EY736040 vs. ExPASy Swiss-Prot
Match: SODF_RICTY (Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi GN=sodB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.313e-13
Identity = 44/140 (31.43%), Postives = 64/140 (45.71%), Query Frame = 1
Query:  253 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQIELQK*TNLYGMGNSYSQQQLT*SVSWSALSFVWNHDFFWESMQPGGGDIPKYGVLEQMEKDFGSFTNFTEK 672
            PY  ++ +P+ +  T + H G+ H  YV+ LN  L   + L    L+ ++K S +  + + VFNNA QI                                WNH FFW S++P GG  P   V EQ+ +DFGSF  F E+
Sbjct:   20 PYAKESFKPHFTCETFDYHHGKHHNSYVQNLNNLLKDREELQKKDLEGIIKWS-SKNSEVTVFNNASQI--------------------------------WNHTFFWYSIKPHGGGKPSGKVFEQISQDFGSFEQFCEQ 126          

HSP 2 Score: 22.3274 bits (46), Expect = 5.313e-13
Identity = 8/20 (40.00%), Postives = 12/20 (60.00%), Query Frame = 3
Query:  678 EAGLPLFGSGYVWLVLKRER 737
            +  L  FGSG+VW+V    +
Sbjct:  129 QEALGQFGSGWVWVVYNNNK 148          
BLAST of EY736040 vs. ExPASy Swiss-Prot
Match: SODF_RICPR (Superoxide dismutase [Mn/Fe] OS=Rickettsia prowazekii GN=sodB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.118e-12
Identity = 41/137 (29.93%), Postives = 62/137 (45.26%), Query Frame = 1
Query:  253 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQIELQK*TNLYGMGNSYSQQQLT*SVSWSALSFVWNHDFFWESMQPGGGDIPKYGVLEQMEKDFGSFTNF 663
            PY  ++ +P+ ++ T + H G+ H  YV+ LN  +   + L    L+E+++ S  +   + + NNA QI                                WNH FFW S++P GG  P   V EQ+ KDFGSF  F
Sbjct:   20 PYDKESFKPHFTRETFDYHHGKHHNSYVQNLNNLIKDREELQKKDLEEIIEWSSQNAE-VAILNNASQI--------------------------------WNHTFFWYSIKPHGGGKPSGKVFEQISKDFGSFEQF 123          
BLAST of EY736040 vs. ExPASy Swiss-Prot
Match: SODF_COXBU (Superoxide dismutase [Fe] OS=Coxiella burnetii GN=sodB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.229e-11
Identity = 45/137 (32.85%), Postives = 60/137 (43.80%), Query Frame = 1
Query:  253 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQIELQK*TNLYGMGNSYSQQQLT*SVSWSALSFVWNHDFFWESMQPGGGDIPKYGVLEQMEKDFGSFTNF 663
            PYKL+ALEP++S+ TLE H G+ HR YV  LNK L +        L+E+++ S        +FNNA Q                                 WNH F+W  M P GG  P   +   ++K FGS   F
Sbjct:    9 PYKLNALEPHISQETLEYHHGKHHRAYVNKLNK-LIEGTPFEKEPLEEIIRKSDGG-----IFNNAAQ--------------------------------HWNHTFYWHCMSPDGGGDPSGELASAIDKTFGSLEKF 107          

HSP 2 Score: 21.1718 bits (43), Expect = 1.229e-11
Identity = 7/9 (77.78%), Postives = 8/9 (88.89%), Query Frame = 3
Query:  696 FGSGYVWLV 722
            FGSG+ WLV
Sbjct:  119 FGSGWAWLV 127          
BLAST of EY736040 vs. ExPASy Swiss-Prot
Match: SODF_RHIME (Superoxide dismutase [Mn] OS=Rhizobium meliloti GN=sodB PE=1 SV=3)

HSP 1 Score: 62.7734 bits (151), Expect = 7.622e-11
Identity = 47/144 (32.64%), Postives = 64/144 (44.44%), Query Frame = 1
Query:  235 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQIELQK*TNLYGMGNSYSQQQLT*SVSWSALSFVWNHDFFWESMQPGGGDIPKYGVLE-QMEKDFGSFTNF 663
            + L   PY  DAL PYMS+ TLE H  + H  YV   NK LA++  L   +L+++VK SY +  PL  FNNA Q                                 +NH  FW+ M+ GGG     G L+  ++ D G +  F
Sbjct:    3 FELPNLPYDYDALAPYMSRETLEYHHDKHHLAYVTNGNK-LAEEAGLSDLSLEDIVKKSYGTNQPL--FNNAGQ--------------------------------HYNHVHFWKWMKKGGGGTSLPGKLDAAIKSDLGGYDKF 111          

HSP 2 Score: 25.409 bits (54), Expect = 7.622e-11
Identity = 11/24 (45.83%), Postives = 14/24 (58.33%), Query Frame = 3
Query:  657 KFHREGIEAGLPLFGSGYVWLVLK 728
            KF  +   AG   FGSG+ WL +K
Sbjct:  110 KFRADFSAAGAGQFGSGWAWLSVK 133          
The following BLAST results are available for this feature:
BLAST of EY736040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SODF_SOYBN3.705e-2742.38Superoxide dismutase [Fe], chloroplastic OS=Glycin... [more]
SODF_ARATH3.720e-2740.52Superoxide dismutase [Fe], chloroplastic OS=Arabid... [more]
SODF_NICPL6.733e-2738.15Superoxide dismutase [Fe], chloroplastic (Fragment... [more]
SODF_SYNY32.832e-1531.03Superoxide dismutase [Fe] OS=Synechocystis sp. (st... [more]
SODF_SYNE73.887e-1430.07Superoxide dismutase [Fe] OS=Synechococcus elongat... [more]
SODF_RICTY5.313e-1331.43Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi G... [more]
SODF_RICPR6.118e-1229.93Superoxide dismutase [Mn/Fe] OS=Rickettsia prowaze... [more]
SODF_COXBU1.229e-1132.85Superoxide dismutase [Fe] OS=Coxiella burnetii GN=... [more]
SODF_RHIME7.622e-1132.64Superoxide dismutase [Mn] OS=Rhizobium meliloti GN... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-009-C04-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736040 ID=EY736040; Name=EY736040; organism=Citrus sinensis; type=EST; length=846bp
CCACGCGTCCGGGCACAGTTCCCACTTTGCACACAAAGAGATTAATCTTT
TCTTGAAAAAAAAAAAGAAAAAGAAAAAAGAATTCGACAGAGAACTGAAA
TGGGTTCAGTTACTTGTAATCCCTTGGCTCCACCTAGTACTCGTCTTCTG
CTCAATCCCTTGAAGATTCCCAAGTTTTGTCATTCGAGAAGACAGCTTCA
TGGGTCACAAAGAGCTTCCAAAATCATTGCTTACTATGGATTAAAGACAC
CTCCTTATAAACTTGATGCTTTAGAGCCTTATATGAGCAAGCGGACGCTG
GAAGTACATTGGGGAGAGCTTCATCGTGGCTATGTGGAAGGTTTGAATAA
ACATCTTGCGAAAGATGATGTGTTGTATGGATACACTTTGGATGAACTTG
TTAAAGTTTCTTATAACAGTGGAAACCCTTTACCCGTATTCAACAATGCT
GTACAGATAGAGCTTCAGAAGTAAACAAACCTTTATGGAATGGGAAATTC
TTACAGCCAACAACAGTTAACCTAGTCGGTGTCTTGGAGTGCTTTATCCT
TTGTCTGGAACCATGACTTCTTTTGGGAGTCCATGCAGCCTGGAGGAGGT
GACATACCCAAATATGGAGTACTTGAGCAGATGGAAAAGGACTTTGGTTC
CTTTACAAATTTCACAGAGAAGGTATAGAAGCTGGCCTCCCATTATTTGG
CTCTGGCTATGTTTGGCTTGTTTTGAAGAGGGAAAGAGAAAAGGCTTGCT
GTGGGTAAAACCTCGGGTGCGTGACTCGGCGGGGGTGGAGTGACGTCCCC
AAATCCGGTTGGATATGTGGGAACCAGGCCTTTTATCTGGAGTCCA
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