EY736022

Overview
NameEY736022
Unique NameEY736022
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2819 contig Csv1_Contig2819:947..1820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY736022 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.482e-66
Identity = 132/242 (54.55%), Postives = 159/242 (65.70%), Query Frame = 2
Query:   11 APVVEAAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDDKIPAREFDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQYKAAVELGIMGRTTGXXXXXXXXXXXXXXXXXXXXERQPSR------------------GSTPV-------AETQACPICLTNAKDLAFGCGHMTCRECGSXVSNCPICRQRITNRLRLF 661
            AP+++ AM IVE+SGGQYHVLVIIADGQVTRSV+T +G+LS QEQKT+ +IV AS  PLSIVLVGVGDGPW+ M++FDD IPAR FDNFQFVNFT IM+KN   S KET FAL+ALMEIP QYKA +EL ++GR  G                      +PSR                   S+PV       ++ Q CPICL+N KD+AFGCGH TC ECG  +  CPICR  I  R++L+
Sbjct:  227 APIIDMAMTIVEQSGGQYHVLVIIADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMAKNKAQSLKETEFALSALMEIPQQYKATIELNLLGRRNGYIPERFPLPPPMRGGSSSYNSPKPSRLPSFKPSVPPHPTEGYHVRSSPVPPPTSSASDNQLCPICLSNPKDMAFGCGHQTCCECGPDLQMCPICRAPIQTRIKLY 468          
BLAST of EY736022 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.850e-65
Identity = 128/229 (55.90%), Postives = 152/229 (66.38%), Query Frame = 2
Query:   11 APVVEAAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDDKIPAREFDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQYKAAVELGIMGRTTGXXXXXXXXXXXXXXXXXXXXERQP------------SRGSTPVAETQACPICLTNAKDLAFGCGHMTCRECGSXVSNCPICRQRITNRLRLF 661
            AP++E AM +VE+S GQYHVLVIIADGQVTRSV+T  G LS QEQKT+ +IV AS+ PLSIVLVGVGDGPW+ MQ+FDD IPAR FDNFQFVNFT IMSKN   S KET FAL+ALMEIP QYKA +EL ++G   G                     R P            S+  +   + Q CPICL+N K++AFGCGH TC ECG  +  CPICR  I  R++L+
Sbjct:  261 APIIEMAMTVVEQSSGQYHVLVIIADGQVTRSVDTEHGRLSPQEQKTVDAIVKASTLPLSIVLVGVGDGPWDMMQEFDDNIPARAFDNFQFVNFTEIMSKNKDQSRKETEFALSALMEIPPQYKATIELNLLGVRNGNIPQRIPLPPPVQSGSSFSSSRIPNFEPSVPPYPFESKQMSSADDIQLCPICLSNPKNMAFGCGHQTCCECGPDLKVCPICRAPIQTRIKLY 489          
BLAST of EY736022 vs. ExPASy Swiss-Prot
Match: CPNA2_CAEEL (Copine domain-containing protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 1.748e-25
Identity = 66/135 (48.89%), Postives = 84/135 (62.22%), Query Frame = 2
Query:    2 TRPAPVVEAAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDDKIPAREFDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQYKAAVELGIM 406
            T   P+++ A++I  K    YH+LVI+ADGQVT             E+   K+I AAS YPLSI++VGVGDGPW  M +FDD IP R FDNF FV+F  +M         + +FAL ALMEIP QYKA  ELG++
Sbjct: 7424 TNFVPLIDRAIEIC-KEKHSYHILVIVADGQVTN------------EKINQKAIAAASHYPLSIIMVGVGDGPWNMMGRFDDNIPKRLFDNFHFVDFHKVM---FNAPNADASFALNALMEIPDQYKAIKELGLL 7542          
The following BLAST results are available for this feature:
BLAST of EY736022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RGLG2_ARATH3.482e-6654.55E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH3.850e-6555.90E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
CPNA2_CAEEL1.748e-2548.89Copine domain-containing protein 2 OS=Caenorhabdit... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-009-A09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736022 ID=EY736022; Name=EY736022; organism=Citrus sinensis; type=EST; length=874bp
CACGCGTCCGGCTCCGGTGGTTGAGGCTGCAATGGACATTGTGGAGAAGA
GTGGAGGCCAGTATCATGTTTTGGTTATCATTGCAGATGGCCAGGTTACA
AGGAGTGTCAATACAGGTGATGGAGAACTGAGTTCACAAGAACAGAAAAC
AATAAAGTCAATTGTTGCTGCAAGTTCATATCCACTTTCCATTGTGCTTG
TTGGAGTCGGTGATGGACCTTGGGAAGACATGCAGAAATTTGATGACAAG
ATCCCTGCACGTGAATTTGATAATTTTCAGTTTGTTAATTTTACCGCCAT
TATGTCAAAAAATGCAACTCCATCTGAGAAAGAAACAGCTTTTGCTCTTG
CCGCTCTCATGGAGATACCTATTCAATACAAAGCTGCAGTAGAACTTGGT
ATTATGGGACGCACGACAGGGAGAGCAAAGAAAATAGCTCCACGACCTCC
TCCAGCTCCTTATTCTCGCCGTGCCCTGCCAGAACGTCAACCAAGCCGTG
GTTCAACCCCTGTTGCGGAAACCCAGGCTTGCCCAATTTGCCTGACCAAT
GCAAAGGACTTGGCCTTTGGCTGTGGGCACATGACTTGTCGTGAATGTGG
ATCANGAGTGTCAAACTGCCCTATATGCCGCCAAAGGATCACCAACCGTC
TCAGGCTGTTTGCTTGATGGCTGTCCGGCANNGAAGATCAGTACNGGAGT
GTTTTANGAATGCATTTGCGTGTTTTAAGGGATGGAAGTTGTACTANNAT
GTACAGCATANTTCCATGTTCATCACGCCGAACTCTTGTATTTGATGCTT
TAGCTTGCTTTACTGGCTANAAAGTATATATTTAATGTTAGCCATTTAAT
TAAGATCCCAATAAAACTCTGAAT
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