EY736010

Overview
NameEY736010
Unique NameEY736010
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736010 vs. ExPASy Swiss-Prot
Match: UBP26_ARATH (Ubiquitin carboxyl-terminal hydrolase 26 OS=Arabidopsis thaliana GN=UBP26 PE=1 SV=2)

HSP 1 Score: 290.426 bits (742), Expect = 8.897e-80
Identity = 135/226 (59.73%), Postives = 176/226 (77.88%), Query Frame = 3
Query:   69 SDRDRRKSLKGLADDVLSGKLVEGTYYVSKSWLQQWTRRKNLDAPSEADGGPTTSIRCPHGQLMPEKAGGAKRLLVPEILWLFIYEDAMKVKPDDLLGCSTFPLDSEECPQCSDALSEVACLEDSIRARKLKERQNHEKLALGKSIPLSLDCKYYLLPSTWLTKWRNYMSASGKNASSI-EPEILDGVIDSLECEKHLPLLERAPDLVCERGSNYQTRSATDWLDI 743
            S RDRR  +K +A+DVLSGK  +G YY+S++WLQQW +RKNLDAP+EAD GPT +I C HG+LMPE+A GAKR++VPE  W F++EDA+KV  +D L C+ FP+DS +C  C++ LSEVAC EDS+R  K+K+RQNHEKLA GK IPL+   +Y+LLPS WL +WR Y++ +GKN+SS  EPE LDGVI++L+C+KH  LLER P+LVC RGS +Q   +TD L I
Sbjct:  611 SYRDRRTFMKSIANDVLSGKCEDGMYYISRAWLQQWIKRKNLDAPTEADAGPTNAITCNHGELMPEQAPGAKRVVVPENFWSFLFEDALKVMSEDTLDCTCFPVDSSQCCHCTEVLSEVACFEDSLRTLKVKQRQNHEKLATGKGIPLTPQSRYFLLPSPWLVQWRIYINMTGKNSSSAPEPERLDGVINTLKCKKHTRLLERLPELVCRRGSYFQKNPSTDKLTI 836          

HSP 2 Score: 28.8758 bits (63), Expect = 8.897e-80
Identity = 12/21 (57.14%), Postives = 14/21 (66.67%), Query Frame = 2
Query:   11 NTSIQCLHGKVPESKIGSMKR 73
            NT + C HGKV  SK+  MKR
Sbjct:  550 NTPLLCSHGKVHASKVNCMKR 570          
BLAST of EY736010 vs. ExPASy Swiss-Prot
Match: UBP26_ORYSJ (Ubiquitin carboxyl-terminal hydrolase 26 OS=Oryza sativa subsp. japonica GN=UBP26 PE=2 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 9.644e-61
Identity = 121/223 (54.26%), Postives = 161/223 (72.20%), Query Frame = 3
Query:   75 RDRRKSLKGLADDVLSGKLVEGT-YYVSKSWLQQWTRRKNLDAPSEADGGPTTSIRCPHGQLMPEKAGGAKRLLVPEILWLFIYEDAMKVKPDDLLGCSTFPLDSEECPQCSDALSEVACLEDSIRARKLKERQNHEKLALGKSIPLSLDCKYYLLPSTWLTKWRNYMSASGKNASSI-EPEILDGVIDSLECEKHLPLLERAPDLVCERGSNYQTRSATDWL 737
            RDR+ SL+ +A+  L+G   +G  Y+VS+ WL QW RRKN+D PS+AD GPT ++ C HG L+PE A GAKR+ VPE LWLF+YE +  +K DD++   TFP DS+ C  CS  LS VA +ED++RA KLK+RQ+HEKL  GKS+ L    KYYL+PS+WL++WR Y++A+GKN SS+ EP+ L+  I+SL CEKH  LL+R  DLVC+RG+  Q  S TD L
Sbjct:  616 RDRKASLRSIAEAALAGNNPDGPLYFVSRPWLTQWLRRKNVDIPSDADSGPTIALTCTHGNLLPEHASGAKRVTVPEDLWLFLYETS-GMKIDDIV---TFPSDSQPCGICSQQLSVVASVEDNLRAVKLKQRQSHEKLTSGKSLALHPGQKYYLVPSSWLSEWRAYITATGKNISSLPEPQSLEVTINSLICEKHSRLLQRPLDLVCKRGTITQKASNTDGL 834          
BLAST of EY736010 vs. ExPASy Swiss-Prot
Match: UBP26_ORYSI (Ubiquitin carboxyl-terminal hydrolase 26 OS=Oryza sativa subsp. indica GN=UBP26 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 9.644e-61
Identity = 121/223 (54.26%), Postives = 161/223 (72.20%), Query Frame = 3
Query:   75 RDRRKSLKGLADDVLSGKLVEGT-YYVSKSWLQQWTRRKNLDAPSEADGGPTTSIRCPHGQLMPEKAGGAKRLLVPEILWLFIYEDAMKVKPDDLLGCSTFPLDSEECPQCSDALSEVACLEDSIRARKLKERQNHEKLALGKSIPLSLDCKYYLLPSTWLTKWRNYMSASGKNASSI-EPEILDGVIDSLECEKHLPLLERAPDLVCERGSNYQTRSATDWL 737
            RDR+ SL+ +A+  L+G   +G  Y+VS+ WL QW RRKN+D PS+AD GPT ++ C HG L+PE A GAKR+ VPE LWLF+YE +  +K DD++   TFP DS+ C  CS  LS VA +ED++RA KLK+RQ+HEKL  GKS+ L    KYYL+PS+WL++WR Y++A+GKN SS+ EP+ L+  I+SL CEKH  LL+R  DLVC+RG+  Q  S TD L
Sbjct:  616 RDRKASLRSIAEAALAGNNPDGPLYFVSRPWLTQWLRRKNVDIPSDADSGPTIALTCTHGNLLPEHASGAKRVTVPEDLWLFLYETS-GMKIDDIV---TFPSDSQPCGICSQQLSVVASVEDNLRAVKLKQRQSHEKLTSGKSLALHPGQKYYLVPSSWLSEWRAYITATGKNISSLPEPQSLEVTINSLICEKHSRLLQRPLDLVCKRGTITQKASNTDGL 834          
The following BLAST results are available for this feature:
BLAST of EY736010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
UBP26_ARATH8.897e-8059.73Ubiquitin carboxyl-terminal hydrolase 26 OS=Arabid... [more]
UBP26_ORYSJ9.644e-6154.26Ubiquitin carboxyl-terminal hydrolase 26 OS=Oryza ... [more]
UBP26_ORYSI9.644e-6154.26Ubiquitin carboxyl-terminal hydrolase 26 OS=Oryza ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-008-H07-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736010 ID=EY736010; Name=EY736010; organism=Citrus sinensis; type=EST; length=866bp
CACGCGTCCGAATACATCTATTCAGTGCTTGCACGGGAAAGTCCCAGAAT
CAAAAATTGGCTCCATGAAGCGATAGAGATCGAAGAAAATCATTGAAAGG
GCTCGCAGATGATGTGCTATCAGGGAAGCTTGTCGAGGGAACATACTATG
TATCCAAGTCATGGCTACAACAATGGACAAGAAGAAAAAACCTTGATGCT
CCCAGTGAAGCTGATGGAGGACCAACAACTTCAATTAGGTGTCCCCATGG
GCAGTTGATGCCTGAGAAAGCTGGTGGTGCTAAGCGATTGCTGGTTCCAG
AGATTCTCTGGCTCTTTATTTATGAAGATGCCATGAAAGTAAAGCCCGAC
GATCTATTGGGTTGTTCAACCTTTCCTTTAGACTCTGAAGAGTGCCCACA
GTGCAGTGATGCACTTTCTGAAGTGGCATGCCTCGAAGATTCTATAAGAG
CTCGGAAGCTTAAAGAGCGCCAAAATCATGAAAAACTAGCTTTGGGAAAA
AGTATTCCACTGTCTTTGGATTGCAAGTATTACTTGTTGCCCTCAACCTG
GCTTACCAAATGGAGAAACTACATGAGTGCTAGTGGAAAAAATGCTTCAT
CCATTGAACCAGAAATCCTGGATGGTGTCATTGATTCACTTGAATGTGAA
AAGCATTTACCACTACTTGAAAGGGCTCCTGACCTGGTTTGCGAACGTGG
TTCTAATTATCAGACAAGGTCTGCGACAGATTGGTTGGACATTGGTGAGT
TAAAACGATAGGAAAGGATCTCTCCAACAGTCGGGGGAGCGGCCGTGGAG
GGGGTAGCTGGGGGGCGCCCGGCCGCTCGCCGGCACGCCCAGAGCGGGAA
TCGGTAGGGGAGCGTC
back to top