EY736008

Overview
NameEY736008
Unique NameEY736008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY736008_ssr17 microsatellite EY736008_ssr17:17..38. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12479 contig Csv1_Contig12479:178..1041. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY736008 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.664e-20
Identity = 69/236 (29.24%), Postives = 110/236 (46.61%), Query Frame = 2
Query:  179 ESKKLWIVAAPAICTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGQEENIAEVAGTISFMLIPVLFAFIISFTCQMYLQAQSRNMIISYLAACXXXXXXXXXXXXP*N*ILDSLEHWDHNSGILDPNL-----------------GSLLFVICGGCPXTWTGFSFAAFR 835
            ESK LW ++  +I     ++ L+ V+  F GH+G+ QLA  S+    +   A GI+LGMASA++T+CGQA+GA+QY  +GI  QR+ ++    A                +GQ   IA      +  +IP ++AF ++   Q +LQAQ+    ++Y++                  +L +L  W   + +LD  L                   +  ++   C  TWTGFS  AFR
Sbjct:   51 ESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVF--------------LLHTLLTW-LVTNVLDFGLLGAALILSFSWWLLVAVNGMYILMSPNCKETWTGFSTRAFR 271          
BLAST of EY736008 vs. ExPASy Swiss-Prot
Match: S47A1_XENTR (Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.673e-12
Identity = 41/152 (26.97%), Postives = 73/152 (48.03%), Query Frame = 2
Query:  167 KLWVESKKLWIVAAPAICTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGQEENIAEVAGTISFMLIPVLFAFIISFTCQMYLQAQ 622
            ++W E+++L  +AAPA  ++   F +++VS  F GH+G  +L A SL  T++      +  G+A A +TL  Q FG     ++GI LQR  ++L +                +   Q+  ++++      + +P L A  +      YLQ Q
Sbjct:   44 EVWQEAQQLLALAAPAFLSQLMIFLISIVSSIFCGHLGKVELDAVSLAITIINITGVAVGTGLAGACDTLISQTFGGSNLKLVGIILQRGILILLLFCFPCWALLINTESILLLFRQDPEVSKLTQIYVLIFLPALPAAFLYQLLAKYLQNQ 195          
BLAST of EY736008 vs. ExPASy Swiss-Prot
Match: S47A2_MOUSE (Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.265e-12
Identity = 43/148 (29.05%), Postives = 71/148 (47.97%), Query Frame = 2
Query:  179 ESKKLWIVAAPAICTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGQEENIAEVAGTISFMLIPVLFAFIISFTCQMYLQAQ 622
            E+  L  +A P    +   F +++VS  F GH+G  +L A +L  +V+      +  G+ASA +TL  Q+FG K    +G+ LQR  ++L +C               + L Q+ ++A +A     + IP L A  +      YLQ+Q
Sbjct:   43 EAAALVALAGPVFLAQLMIFLISIVSSIFCGHLGKVELDAVTLAVSVVNVTGISVGTGLASACDTLMSQSFGGKNLKRVGVILQRGILILLLCCFPCWAIFLNTERLLLLLRQDPDVARLAQVYVMICIPALPAAFLFQLQTRYLQSQ 190          
The following BLAST results are available for this feature:
BLAST of EY736008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TT12_ARATH3.664e-2029.24Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
S47A1_XENTR3.673e-1226.97Multidrug and toxin extrusion protein 1 OS=Xenopus... [more]
S47A2_MOUSE6.265e-1229.05Multidrug and toxin extrusion protein 2 OS=Mus mus... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-008-H05-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736008 ID=EY736008; Name=EY736008; organism=Citrus sinensis; type=EST; length=860bp
CACGCGTCCGATTTCTTCTCTCTCTCTCTCTCTCTCTCCTGCTAGCTCTC
GGTGGAGTGAAAGAAAAGCTTTTTTTCTGGAGGTGAGAATGGTGGGAGAG
ATCAAAGAGAAGCTATTAGGAAACACGGAGGAAAATGATGTTGATGGGCA
AGTGAAATTCAGGCAAAAGCTGTGGGTGGAATCCAAAAAGTTATGGATTG
TAGCAGCTCCCGCTATTTGCACAAGATTTTCTTCATTTGGGCTCAACGTA
GTTAGTCAGGCATTTATTGGGCACATTGGCGCGACCCAACTAGCTGCCTA
CTCACTTGTGTTTACTGTTCTCTTGAGGTTTGCAAATGGCATCCTGTTGG
GCATGGCTAGTGCATTAGAGACGCTCTGTGGGCAAGCTTTTGGGGCGAAA
CAATACCACATGCTAGGAATATATCTTCAAAGATCATGGATAGTCTTAAC
CATTTGTGCTATCCTTCTCTTACCTCTGTTCTTCTTCACTACACCAATTT
TGGTGGCTTTGGGCCAAGAAGAAAATATTGCTGAAGTTGCAGGAACTATT
TCTTTCATGCTAATCCCTGTGTTGTTCGCCTTCATCATATCCTTTACCTG
CCAAATGTACCTACAAGCCCAGAGCAGAAACATGATTATCTCCTACTTGG
CGGCATGTTCATTTTTGCTTCATCTCTTTCTTTCGTGGCTTTTACCATGA
AATTGAATTTTGGACTCCCTGGAGCATTGGGATCACAATTCTGGCATACT
GGATCCAAACTTGGGTTCACTTCTGTTTGTTATATGTGGAGGGTGCCCTN
CAACATGGACGGGTTTCTCATTTGCCGCTTTCAGGATCTCTGGCCTGTAN
TAAAACTTCC
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