EY735907

Overview
NameEY735907
Unique NameEY735907
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2212 contig Csv1_Contig2212:498..1255. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY735907 vs. ExPASy Swiss-Prot
Match: PP332_ARATH (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana GN=EMB1417 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.125e-58
Identity = 111/178 (62.36%), Postives = 133/178 (74.72%), Query Frame = 1 
Query:    7 VRFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDXXXXXXXXXXXXXXXXRYIKGKRVRIPAKPKYELDSATEGKTNEVETTKN 540
            + FPL+ VKKAL  LE+EK+WK+IIQVTKWMLSKGQGRTMGTYF LLNALAED RLDEAEELW K+F++HLEGTPR FF+KMISIYY R MH+K+FE+FADMEELGV+PNV+IVSM+G  F KL M D                RYIKG+RV++ AK   EL     G +++ +   N
Sbjct:   87 LEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQKLFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVKVKAKQLNELSEGEGGLSSDEDKIDN 264
[Close]
BLAST of EY735907 vs. ExPASy Swiss-Prot
Match: PP322_ARATH (Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana GN=At4g18975 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 5.105e-28
Identity = 65/154 (42.21%), Postives = 85/154 (55.19%), Query Frame = 1 
Query:    7 VRFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDXXXXXXXXXXXXXXXXRYIKGKRVRI 468
            V FP+I   KAL+ L     W R+IQ+ KWMLSKGQG TMGTY +LL A   D R DEAE LW  I   H    PR  F +MI++Y +  +H+K+ E+FADMEEL V P+      +  AF++L   +                 Y  G+RVR+
Sbjct:  127 VEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQ-EENRKLILRRYLSEYKYIYFNGERVRV 279
The following BLAST results are available for this feature:
BLAST of EY735907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PP332_ARATH2.125e-5862.36Pentatricopeptide repeat-containing protein At4g21... [more]
PP322_ARATH5.105e-2842.21Pentatricopeptide repeat-containing protein At4g18... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-007-E12-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735907 ID=EY735907; Name=EY735907; organism=Citrus sinensis; type=EST; length=758bp
CCACGCGTCCGGTTTCCATTGATTACAGTAAAGAAAGCATTGAAGACTCT
TGAAAATGAAAAGGATTGGAAAAGGATAATTCAGGTGACAAAATGGATGC
TGAGCAAAGGTCAAGGGAGAACAATGGGCACCTATTTTTTGCTACTGAAT
GCTTTAGCAGAGGATGGGAGACTTGATGAAGCCGAAGAACTTTGGACAAA
AATATTTTTGGATCACCTAGAAGGCACCCCACGTATTTTCTTTGATAAGA
TGATTTCTATTTACTATAACAGGGGCATGCACGAGAAGATGTTTGAGATA
TTTGCCGATATGGAGGAGCTTGGTGTTAGACCAAATGTTTCAATTGTTTC
AATGATGGGAAACGCCTTCCAAAAGCTAGGTATGTTGGACAAGTATGAGA
AATTAAAGAAGAAATACCCACCACCTAAATGGGAGTATCGATATATCAAA
GGAAAGCGTGTTAGGATCCCAGCAAAGCCTAAATATGAATTGGATAGTGC
TACAGAAGGCAAGACTAACGAAGTGGAAACTACAAAAAATCGCAATGAGT
CATCAGAAGAACCTGAAGCTGCAGCCAATCTAAATGAATCTTTGGAGGAG
ACTGAACCAAATACCAAAGAATTGTTGGAGGAAGCTGATGCCATTTCAAA
TGACACTGACATGTCTTCGTACAGGCATGTGCCAGACTAGTTTGTATCGT
CGTGTACTAGACGTTGGTTAGATTCCCACCTTGCTGGGGATCACACTGTG
GTATTGAA
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