EY735893

Overview
NameEY735893
Unique NameEY735893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5214 contig Csv1_Contig5214:379..1262. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY735893 vs. ExPASy Swiss-Prot
Match: Y4634_ARATH (Uncharacterized zinc finger protein At4g06634 OS=Arabidopsis thaliana GN=At4g06634 PE=1 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 8.391e-84
Identity = 157/264 (59.47%), Postives = 181/264 (68.56%), Query Frame = 2
Query:   20 GCGKKFLDSSKLKRHFLIHTGERDYVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHM-----SXXXXXXXXXXXXXXMDEGSDQDAYAGKRVNGKSQ---KQSRAKPNLKMPPAKVTQRKSSTPSPATLNVVRKXTWT-----PXXXXXXXXXXXXXXXDRDNVEDGFXYRQNN 772
            GCGKKFLDSSKLKRH+LIHTGER+Y+C +EGCGKAFSLDFNLRSHMKTHSQENYHICPY  C KRYAHEYKLKNH+A++HEKN   E P+Y  P E++ +T K PA V G  SS+RPYACPYEGCEKAYIHEYKLKLHLKREHPGH+                    +D+GSDQD Y     NGK Q   +QSRAKPN++ PPAKV  +K ST SPA   + +K  W                      DRDNVEDG+ + +NN
Sbjct:  114 GCGKKFLDSSKLKRHYLIHTGERNYICTYEGCGKAFSLDFNLRSHMKTHSQENYHICPYSGCVKRYAHEYKLKNHVAAYHEKNGGGETPKYTPPAEKVLRTVKTPATVCG-PSSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHLQEENADTPTLNKHNGNDRNEIDDGSDQDVYRKHASNGKGQTHKQQSRAKPNMRTPPAKV-GKKGSTSSPAKARIAKK-PWQAKETFEEVEREEEEDSEETEEDRDNVEDGWRFGENN 374          
BLAST of EY735893 vs. ExPASy Swiss-Prot
Match: ZFP42_HUMAN (Zinc finger protein 42 homolog OS=Homo sapiens GN=ZFP42 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.840e-22
Identity = 44/82 (53.66%), Postives = 58/82 (70.73%), Query Frame = 2
Query:   23 CGKKFLDSSKLKRHFLIHTGERDYVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKN 268
            CGK F++SSKLKRHFL+HTGE+ + C  EGCGK FSLDFNLR+H++ H+ E   +CP+  C +R+     LK HI +H   N
Sbjct:  222 CGKAFVESSKLKRHFLVHTGEKPFRCTFEGCGKRFSLDFNLRTHVRIHTGEKRFVCPFQGCNRRFIQSNNLKAHILTHANTN 303          
BLAST of EY735893 vs. ExPASy Swiss-Prot
Match: TYY1_MOUSE (Transcriptional repressor protein YY1 OS=Mus musculus GN=Yy1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.354e-22
Identity = 42/78 (53.85%), Postives = 59/78 (75.64%), Query Frame = 2
Query:   23 CGKKFLDSSKLKRHFLIHTGERDYVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASH 256
            CGK F++SSKLKRH L+HTGE+ + C  EGCGK FSLDFNLR+H++ H+ +  ++CP+  C K++A    LK+HI +H
Sbjct:  330 CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 407          
BLAST of EY735893 vs. ExPASy Swiss-Prot
Match: TYY1_HUMAN (Transcriptional repressor protein YY1 OS=Homo sapiens GN=YY1 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 5.354e-22
Identity = 42/78 (53.85%), Postives = 59/78 (75.64%), Query Frame = 2
Query:   23 CGKKFLDSSKLKRHFLIHTGERDYVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASH 256
            CGK F++SSKLKRH L+HTGE+ + C  EGCGK FSLDFNLR+H++ H+ +  ++CP+  C K++A    LK+HI +H
Sbjct:  330 CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 407          
BLAST of EY735893 vs. ExPASy Swiss-Prot
Match: TYY2_RATRT (Transcription factor YY2 OS=Rattus rattus GN=Yy2 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.193e-21
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 2
Query:   23 CGKKFLDSSKLKRHFLIHTGERDYVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASH 256
            CGK F++SSKLKRH L+HTGE+ Y C  EGCG+ FSLDFNLR+H++ H+ +   +CP+  C K++A    LK+HI +H
Sbjct:  292 CGKAFVESSKLKRHQLVHTGEKPYQCTFEGCGRRFSLDFNLRTHVRIHTGDKPFVCPFDACNKKFAQSTNLKSHILTH 369          
BLAST of EY735893 vs. ExPASy Swiss-Prot
Match: TYY2_RAT (Transcription factor YY2 OS=Rattus norvegicus GN=Yy2 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.193e-21
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 2
Query:   23 CGKKFLDSSKLKRHFLIHTGERDYVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASH 256
            CGK F++SSKLKRH L+HTGE+ Y C  EGCG+ FSLDFNLR+H++ H+ +   +CP+  C K++A    LK+HI +H
Sbjct:  292 CGKAFVESSKLKRHQLVHTGEKPYQCTFEGCGRRFSLDFNLRTHVRIHTGDKPFVCPFDACNKKFAQSTNLKSHILTH 369          
BLAST of EY735893 vs. ExPASy Swiss-Prot
Match: TYY2_MOUSE (Transcription factor YY2 OS=Mus musculus GN=Yy2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.193e-21
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 2
Query:   23 CGKKFLDSSKLKRHFLIHTGERDYVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASH 256
            CGK F++SSKLKRH L+HTGE+ Y C  EGCG+ FSLDFNLR+H++ H+ +   +CP+  C K++A    LK+HI +H
Sbjct:  294 CGKAFVESSKLKRHQLVHTGEKPYQCTFEGCGRRFSLDFNLRTHVRIHTGDKPFVCPFDACNKKFAQSTNLKSHILTH 371          
BLAST of EY735893 vs. ExPASy Swiss-Prot
Match: PHO_DROME (Polycomb protein PHO OS=Drosophila melanogaster GN=pho PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.558e-21
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 2
Query:   23 CGKKFLDSSKLKRHFLIHTGERDYVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASH 256
            CGK F++SSKLKRH L+HTGE+ + C  EGCGK FSLDFNLR+H++ H+ +   +CP+  C K++A    LK+HI +H
Sbjct:  391 CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPFVCPFDACNKKFAQSTNLKSHILTH 468          
BLAST of EY735893 vs. ExPASy Swiss-Prot
Match: ZFP42_MOUSE (Zinc finger protein 42 OS=Mus musculus GN=Zfp42 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.532e-21
Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = 2
Query:   23 CGKKFLDSSKLKRHFLIHTGERDYVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASH 256
            CGK F +SSKLKRHFL+HTGE+ Y C  EGCGK FSLDFNLR+H++ H+ E   +CP+  C K +      K HI +H
Sbjct:  204 CGKAFTESSKLKRHFLVHTGEKPYQCTFEGCGKRFSLDFNLRTHIRIHTGERRFVCPFDGCEKSFIQSNNQKIHILTH 281          
BLAST of EY735893 vs. ExPASy Swiss-Prot
Match: TYY2_HUMAN (Transcription factor YY2 OS=Homo sapiens GN=YY2 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.532e-21
Identity = 41/78 (52.56%), Postives = 57/78 (73.08%), Query Frame = 2
Query:   23 CGKKFLDSSKLKRHFLIHTGERDYVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASH 256
            CGK FL+SSKL+RH L+HTGE+ + C  EGCGK FSLDFNLR+H++ H+ +   +CP+  C +++A    LK HI +H
Sbjct:  288 CGKAFLESSKLRRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHLRIHTGDKPFVCPFDVCNRKFAQSTNLKTHILTH 365          
The following BLAST results are available for this feature:
BLAST of EY735893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
Y4634_ARATH8.391e-8459.47Uncharacterized zinc finger protein At4g06634 OS=A... [more]
ZFP42_HUMAN1.840e-2253.66Zinc finger protein 42 homolog OS=Homo sapiens GN=... [more]
TYY1_MOUSE5.354e-2253.85Transcriptional repressor protein YY1 OS=Mus muscu... [more]
TYY1_HUMAN5.354e-2253.85Transcriptional repressor protein YY1 OS=Homo sapi... [more]
TYY2_RATRT1.193e-2153.85Transcription factor YY2 OS=Rattus rattus GN=Yy2 P... [more]
TYY2_RAT1.193e-2153.85Transcription factor YY2 OS=Rattus norvegicus GN=Y... [more]
TYY2_MOUSE1.193e-2153.85Transcription factor YY2 OS=Mus musculus GN=Yy2 PE... [more]
PHO_DROME1.558e-2153.85Polycomb protein PHO OS=Drosophila melanogaster GN... [more]
ZFP42_MOUSE4.532e-2155.13Zinc finger protein 42 OS=Mus musculus GN=Zfp42 PE... [more]
TYY2_HUMAN4.532e-2152.56Transcription factor YY2 OS=Homo sapiens GN=YY2 PE... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-007-D07-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735893 ID=EY735893; Name=EY735893; organism=Citrus sinensis; type=EST; length=884bp
CACGCGTCCGCGGACGCGTGGGTGTGGAAAGAAATTTTTGGATAGTTCGA
AGTTGAAAAGACACTTTCTTATTCATACTGGAGAAAGAGATTATGTATGT
CCTCATGAAGGCTGTGGTAAGGCATTCTCTTTGGACTTCAACCTGAGATC
ACACATGAAAACACATTCACAAGAAAATTATCACATCTGCCCATACCCAG
ATTGTGGAAAGAGATATGCTCATGAGTACAAGTTAAAGAATCATATTGCA
TCTCACCACGAAAAGAATGCTGCAGTGGAGGTGCCCAGATACGCTACTCC
TCCCGAGAGGATAACAAAAACTCCCAAGCCACCTGCTGGGGTTTATGGTT
CTGCATCATCTGAACGTCCTTATGCATGTCCTTATGAAGGGTGTGAAAAG
GCATATATCCATGAATACAAGCTTAAACTCCATCTGAAGCGGGAGCATCC
CGGCCATATGTCTGATGAAAATGCCGAGAATGCCACAACAAATGCTGATA
ATGAGATGGATGAAGGCAGTGACCAAGATGCCTATGCTGGAAAACGTGTT
AATGGCAAAAGTCAAAAACAAAGCCGGGCGAAGCCAAACTTGAAGATGCC
TCCTGCAAAAGTAACGCAACGCAAAAGCTCAACTCCATCTCCTGCCACCT
TGAATGTAGTGAGAAAGNCAACATGGACTCCTANAGAAGAAGTTTACGAG
GAAGAAGATAGTGAAGAAACTGAGGAAGATCGTGACAATGTTGAGGATGG
ATTTANGTACCGGCAAAATAATGAAGATGATGATGAGGAGACTGAGTACG
AAACTGAGCCTATAAAATGTTCCTTCACCCTCTGGGTAGGGCACTTGTAT
GATCTAACCTTACACCAGGTCCCTGGCTCTTTAT
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