EY735887
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY735887 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 343.199 bits (879), Expect = 1.162e-93 Identity = 173/261 (66.28%), Postives = 201/261 (77.01%), Query Frame = 1 Query: 100 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKRDTKGDRHGTPAERIWAANNPSSQKSRPHTLFASGTSIIQNAPQANGSCGGTVPPPAY-SNGAASWPLPPGRATRARGETCTSPPHPV 879 +ERNQDAT YVG LD +V+E LLWELF+QAGPVVN ++PKDRVT HQGYGFVEF SEEDADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI+ PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+K+D+KG+RHG+ AER+ AA NP SQ RPH LFA S G +PPP G+ P+PP A G PP P+ Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGAL-PPGIPPAMPPPPM 266
BLAST of EY735887 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 343.199 bits (879), Expect = 1.162e-93 Identity = 173/261 (66.28%), Postives = 201/261 (77.01%), Query Frame = 1 Query: 100 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKRDTKGDRHGTPAERIWAANNPSSQKSRPHTLFASGTSIIQNAPQANGSCGGTVPPPAY-SNGAASWPLPPGRATRARGETCTSPPHPV 879 +ERNQDAT YVG LD +V+E LLWELF+QAGPVVN ++PKDRVT HQGYGFVEF SEEDADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI+ PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+K+D+KG+RHG+ AER+ AA NP SQ RPH LFA S G +PPP G+ P+PP A G PP P+ Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGAL-PPGIPPAMPPPPM 266
BLAST of EY735887 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1) HSP 1 Score: 343.199 bits (879), Expect = 1.162e-93 Identity = 173/261 (66.28%), Postives = 201/261 (77.01%), Query Frame = 1 Query: 100 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKRDTKGDRHGTPAERIWAANNPSSQKSRPHTLFASGTSIIQNAPQANGSCGGTVPPPAY-SNGAASWPLPPGRATRARGETCTSPPHPV 879 +ERNQDAT YVG LD +V+E LLWELF+QAGPVVN ++PKDRVT HQGYGFVEF SEEDADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI+ PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+K+D+KG+RHG+ AER+ AA NP SQ RPH LFA S G +PPP G+ P+PP A G PP P+ Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGAL-PPGIPPAMPPPPM 266
BLAST of EY735887 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2) HSP 1 Score: 318.161 bits (814), Expect = 4.001e-86 Identity = 161/259 (62.16%), Postives = 193/259 (74.52%), Query Frame = 1 Query: 103 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKRDTKGDRHGTPAERIWAANNPSSQKSRPHTLFAS-GTSIIQNAPQANGSCGGTVPPPAYSNGAASWPLPPGRATRARGETCTSPPHP 876 ERNQDAT YVG LD +V+E +LWEL VQAGPVV+V +PKDRVT HQG+GFVEF EEDADYAIK+LNMIKLYGKPI+VNKAS +K++DVGAN+F+GNLDP+VDEKLLYDTFSAFGVI+ PKIMRD D+G S+GF FI++ SFEASD A+EAMNGQ+LCNR ITVSYA+KRD+KG+RHGT AER+ AA NP K RPH +F+ + N P A + A++ G + PP G PP P Sbjct: 8 ERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRPHQVFSDVPLGVPANTPLAMPGVHAAI--AAHATGRPGYQPPPLMGMAQSGYQGQYPPVP 264
BLAST of EY735887 vs. ExPASy Swiss-Prot
Match: SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe GN=sap49 PE=2 SV=2) HSP 1 Score: 251.906 bits (642), Expect = 3.522e-66 Identity = 131/258 (50.78%), Postives = 177/258 (68.60%), Query Frame = 1 Query: 103 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDK-KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKRDTKGDRHGTPAER-IWAANNPSSQKSRPHTLFASGTSIIQNAPQANGSCGGTVPPPAYSNGAASWPLPPGRATRARGETCTSPP 870 +RNQDAT Y+GNLD +VT+ +L+EL +QAGPVVN+++P+DRV N H G+GF EF E+D +YA ++LN +KL+GKPIRVN+ASQD+ + +GANLF+GNLDP VDE++LYDTFSA G +V P++ RD + G S+G+GF+SYDSFE +DAAIEAMN Q+L N+ ITVSYA+KR+ KG+RHG AER + AA + P + G S AP + + T+ A+ +PP G T PP Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARD-ENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGERHGDIAERKLAAAAKKNKVAVTPQSTLPPGFSPATPAPTSAANTPATI---------AATSIPPVPNVPLVGATTAVPP 253
BLAST of EY735887 vs. ExPASy Swiss-Prot
Match: SF3B4_DICDI (Splicing factor 3B subunit 4 OS=Dictyostelium discoideum GN=sf3b4 PE=3 SV=1) HSP 1 Score: 233.417 bits (594), Expect = 1.296e-60 Identity = 120/238 (50.42%), Postives = 168/238 (70.59%), Query Frame = 1 Query: 103 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKRDTKGDRHGTPAERIWAANNPS---SQKSRPHTLFASGTSIIQNA--PQANGSCGGTVPPPAYSNG 801 ERN +A + +LDP VTE LL ELF+QA PVV V++PKD++T H G +VEF+S DA+YA+KV+ ++L+ K I++ K ++DK +D+GANLFIGNLD DVDE++L+DTFS FG I+ PK+MRD + G S+GF FI++DSFEASDAAIEAMN Q+LCN+ I+V+YA K+D+ +RHG+ AERI AA+ + +Q+ + + S TS I + Q +PPP + G Sbjct: 8 ERNHEACLLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDAEYALKVMKFVRLFNKEIKIKKENKDK--VDIGANLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRD-ENGVSKGFAFINFDSFEASDAAIEAMNSQFLCNKPISVTYARKKDS-NERHGSSAERIIAASRNTGYLNQQQQQQSSSTSSTSTISTSTPQQQQQQQSQPLPPPIVTAG 241
BLAST of EY735887 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2) HSP 1 Score: 134.806 bits (338), Expect = 6.274e-31 Identity = 72/169 (42.60%), Postives = 109/169 (64.50%), Query Frame = 1 Query: 118 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKR 621 A+ YVG LDP VTE +L+ELF GPV ++ V +D VT GY +V F + ED + A+ LN + G+P R+ + +D +G N+FI NLDP +D K L+DTFSAFG I+ + K+ D + GN++G+GF+ +DS E+++AAIE +NG L ++++ V + R Sbjct: 80 ASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKIL-SCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSR 246 HSP 2 Score: 98.2117 bits (243), Expect = 6.508e-20 Identity = 80/254 (31.50%), Postives = 125/254 (49.21%), Query Frame = 1 Query: 127 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKRDTKGDRHGTPAERIWAANNPSSQKSRPHTLFASGTSIIQ---NAPQANGSCGGTVPPPAYSNGAASWPLPPG 828 Y+ NLD ++TE+ +LF Q G + ++ + KD+ + +G+GFV + + E A A+ LN + GK + V +A + +K + G NLFI NL +VD++ L FSAFG I T+ KIM D + G S+GFGF+ Y + E ++ A+ MN + L + + V+ A +++ R +I A N Q+ A+G +Q P G G P PA NG P+ PG Sbjct: 264 YIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTI-TSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEV---RRSQLEAQIQARNQFRLQQ---QVAAAAGIPAVQYGATGPLIYGP--GGYPIPAAVNG-RGMPMVPG 505
BLAST of EY735887 vs. ExPASy Swiss-Prot
Match: HSH49_YEAST (Protein HSH49 OS=Saccharomyces cerevisiae GN=HSH49 PE=1 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 5.312e-30 Identity = 68/194 (35.05%), Postives = 116/194 (59.79%), Query Frame = 1 Query: 121 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL-NMIKLYGKPIRVNKASQDKKSLDVGAN-----------LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKRDTKGD-RHGTPAERI 663 T YVGN+DP++T+E L+ELF+Q PV+ + PKD+V +QGY F+EF ++ DA YAIK++ N ++LY + I+V + + + ++ +N LFI NL +D L F+ FG ++ P+I + ++ ++ FE +D AI+++N Q + N +ITV YA+K + KG+ ++G +R+ Sbjct: 10 TVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIKIMNNTVRLYDRLIKVRQVTNSTGTTNLPSNISKDMILPIAKLFIKNLADSIDSDQLVKIFNKFGKLIREPEIFY--LSNGKLKCAYVYFEDFEKADLAIKSLNNQLVANNRITVDYAFKENGKGNAKYGDDVDRL 201
BLAST of EY735887 vs. ExPASy Swiss-Prot
Match: PABP_YARLI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia lipolytica GN=PAB1 PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.183e-29 Identity = 70/168 (41.67%), Postives = 109/168 (64.88%), Query Frame = 1 Query: 103 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 603 ++ +A+ YVG LDP VTE +L+E+F GPV +V V +D +T GY +V F ++ D A++ LN + +P R+ + +D GA N++I NLDP +D K L+DTFSAFG I+ + KI D + GNSRGFGF+ Y+S E++++AI+ +NG L ++++ V Sbjct: 41 DQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQIL-SCKIATD-EFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFV 206 HSP 2 Score: 72.0182 bits (175), Expect = 4.995e-12 Identity = 51/193 (26.42%), Postives = 91/193 (47.15%), Query Frame = 1 Query: 103 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKRDTK 630 ++N ++ NL ++TE EL + G +V++ + G+GFV+++ + A AI L+ + G + +A + + D G NL+I NLD +D+ L F+ G I T+ K+M D + G S+GFGF+ Y S E + A+ MN + + + + V A ++D + Sbjct: 222 QKNSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTND-EGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDDKLRAEFAPHGTI-TSAKVMVD-EAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVLAQRKDVR 411
BLAST of EY735887 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.183e-29 Identity = 78/182 (42.86%), Postives = 112/182 (61.54%), Query Frame = 1 Query: 88 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKRDTK 630 G +A + + + YVG+LD VT+ L++ F Q G VV V V +D VT GYG+V F + +DA AI+ LN I LYGKPIRV + +D GA N+FI NLD +D K L+DTFS+FG IV + K+ D +G S+G+GF+ Y + E++ AIE +NG L ++Q+ V +R + Sbjct: 26 GGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIV-SCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQER 205 HSP 2 Score: 84.3445 bits (207), Expect = 9.725e-16 Identity = 57/195 (29.23%), Postives = 102/195 (52.31%), Query Frame = 1 Query: 97 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI---RVNKASQDKKSLDV--------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKRDTK 630 +A + + YV NL T++ L F + G + + V KD +G+GFV F + +DA A++ LN K K R K S+ + L V +NL++ NLDP + ++ L + FS FG VT+ K+MRDP+ G S+G GF+++ + E + A+ ++G+ + ++ + V+ A +++ + Sbjct: 208 TANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGT-VTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDR 399 The following BLAST results are available for this feature:
BLAST of EY735887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 190
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY735887 ID=EY735887; Name=EY735887; organism=Citrus sinensis; type=EST; length=880bpback to top |