EY735873

Overview
NameEY735873
Unique NameEY735873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11836 contig Csv1_Contig11836:47..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY735873 vs. ExPASy Swiss-Prot
Match: PGAP3_CRIGR (Post-GPI attachment to proteins factor 3 OS=Cricetulus griseus GN=PGAP3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.531e-16
Identity = 44/123 (35.77%), Postives = 63/123 (51.22%), Query Frame = 3
Query:  186 ALFLLISCTLPALYASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPIDGPWYLQEPLYLRWKQWDCSSDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALN 554
            A  LL++ T+   + S GD +P+Y+ CV +CE+  C GD   +H  F S            +P+Y+    W C  DC+Y CM    G   + G +  ++HGKWPF R   IQEP +   S LN
Sbjct:    6 ARLLLLTVTVGLAWGSQGDREPVYRDCVLRCEERNCSGD-ALKH--FRS-----------LQPIYMSLAGWTCRDDCKYECMWITVGLYLQEGHRVPQFHGKWPFSRFLFIQEPASAVASLLN 114          

HSP 2 Score: 21.9422 bits (45), Expect = 2.531e-16
Identity = 8/22 (36.36%), Postives = 14/22 (63.64%), Query Frame = 2
Query:  653 VYGTSMGI--LAMNSWFWNAGF 712
            +Y T M    +++N+WFW+  F
Sbjct:  135 MYHTCMAFAWVSLNAWFWSTVF 156          
BLAST of EY735873 vs. ExPASy Swiss-Prot
Match: PGAP3_MOUSE (Post-GPI attachment to proteins factor 3 OS=Mus musculus GN=Pgap3 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.678e-15
Identity = 43/123 (34.96%), Postives = 62/123 (50.41%), Query Frame = 3
Query:  186 ALFLLISCTLPALYASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPIDGPWYLQEPLYLRWKQWDCSSDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALN 554
            A  LL++  +     S GD +P+Y+ CV +CE+  C GD   +H  F S           ++P+Y+    W C  DC+Y CM    G   + G +  ++HGKWPF R   IQEP +   S LN
Sbjct:    6 APLLLLTLAVGLAGGSQGDREPVYRDCVLRCEERNCSGD-ALKH--FRS-----------RQPIYMSLAGWTCRDDCKYECMWFTVGLYLQEGHRVPQFHGKWPFSRFLFIQEPASAVASLLN 114          

HSP 2 Score: 21.9422 bits (45), Expect = 2.678e-15
Identity = 8/22 (36.36%), Postives = 14/22 (63.64%), Query Frame = 2
Query:  653 VYGTSMGI--LAMNSWFWNAGF 712
            +Y T M    +++N+WFW+  F
Sbjct:  135 MYHTCMAFAWVSLNAWFWSTVF 156          
BLAST of EY735873 vs. ExPASy Swiss-Prot
Match: PGAP3_XENTR (Post-GPI attachment to proteins factor 3 OS=Xenopus tropicalis GN=pgap3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.290e-14
Identity = 39/109 (35.78%), Postives = 52/109 (47.71%), Query Frame = 3
Query:  228 ASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPIDGPWYLQEPLYLRWKQWDCSSDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALN 554
            AS GD +P+Y+ CV  CE+  C G +                 +  ++PLY+R   W C  DCRY CM        K G +  ++HGKWPF R    QEP +   S LN
Sbjct:   15 ASRGDREPVYRDCVTLCERNNCTGSRLTD--------------FRAEQPLYMRVTGWTCLDDCRYQCMWYTVSLYLKEGHEVPQFHGKWPFSRFLFFQEPASALASFLN 109          

HSP 2 Score: 21.1718 bits (43), Expect = 1.290e-14
Identity = 5/16 (31.25%), Postives = 12/16 (75.00%), Query Frame = 2
Query:  665 SMGILAMNSWFWNAGF 712
            +  ++++N+WFW+  F
Sbjct:  136 AFSMVSVNAWFWSTIF 151          
BLAST of EY735873 vs. ExPASy Swiss-Prot
Match: PGAP3_XENLA (Post-GPI attachment to proteins factor 3 OS=Xenopus laevis GN=pgap3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.676e-14
Identity = 41/109 (37.61%), Postives = 55/109 (50.46%), Query Frame = 3
Query:  228 ASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPIDGPWYLQEPLYLRWKQWDCSSDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALN 554
            AS GD +P+Y+ CV  C++  C G   F+  +F +           Q+PLY+R   W C  DCRY CM        K G +  ++HGKWPF R    QEP +   S LN
Sbjct:   15 ASRGDREPVYRDCVTVCDQNNCTG---FRLRDFRA-----------QQPLYMRLTGWTCLDDCRYKCMWYTVSLYLKEGHEVPQFHGKWPFSRFLFFQEPASALASFLN 109          

HSP 2 Score: 21.1718 bits (43), Expect = 1.676e-14
Identity = 5/16 (31.25%), Postives = 12/16 (75.00%), Query Frame = 2
Query:  665 SMGILAMNSWFWNAGF 712
            +  ++++N+WFW+  F
Sbjct:  136 AFSMVSVNAWFWSTIF 151          
BLAST of EY735873 vs. ExPASy Swiss-Prot
Match: PGAP3_HUMAN (Post-GPI attachment to proteins factor 3 OS=Homo sapiens GN=PGAP3 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.822e-14
Identity = 43/125 (34.40%), Postives = 59/125 (47.20%), Query Frame = 3
Query:  180 LIALFLLISCTLPALYASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPIDGPWYLQEPLYLRWKQWDCSSDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALN 554
            L A  +L++        S GD +P+Y+ CV QCE+  C G     H  F S           ++P+Y+    W C  DC+Y CM    G   + G K  ++HGKWPF R    QEP +   S LN
Sbjct:    4 LAARLVLLAGAAALASGSQGDREPVYRDCVLQCEEQNCSGG-ALNH--FRS-----------RQPIYMSLAGWTCRDDCKYECMWVTVGLYLQEGHKVPQFHGKWPFSRFLFFQEPASAVASFLN 114          
BLAST of EY735873 vs. ExPASy Swiss-Prot
Match: PGAP3_DANRE (Post-GPI attachment to proteins factor 3 OS=Danio rerio GN=pgap3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.047e-13
Identity = 37/109 (33.94%), Postives = 50/109 (45.87%), Query Frame = 3
Query:  228 ASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPIDGPWYLQEPLYLRWKQWDCSSDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALN 554
            AS GD +P+Y+ CV+ C +  C G +      F S            +P Y+    W C  DCRY CM    G  +  G    ++HGKWPF R    +EP +   S LN
Sbjct:   16 ASQGDKEPVYRDCVKHCVRANCTGARLR---GFQST-----------QPPYMALTGWTCRDDCRYQCMWTTVGLYQAEGYSIPQFHGKWPFARFLCFEEPASALASLLN 110          

HSP 2 Score: 24.2534 bits (51), Expect = 1.047e-13
Identity = 6/17 (35.29%), Postives = 13/17 (76.47%), Query Frame = 2
Query:  662 TSMGILAMNSWFWNAGF 712
            T+  ++++N+WFW+  F
Sbjct:  136 TAFSLVSLNAWFWSTVF 152          
BLAST of EY735873 vs. ExPASy Swiss-Prot
Match: PGAP3_BOVIN (Post-GPI attachment to proteins factor 3 OS=Bos taurus GN=PGAP3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.072e-13
Identity = 41/123 (33.33%), Postives = 59/123 (47.97%), Query Frame = 3
Query:  186 ALFLLISCTLPALYASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPIDGPWYLQEPLYLRWKQWDCSSDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALN 554
            A  +L++        S GD +P+Y+ CV +CE+  C G    +H  F S           ++P+Y+    W C  DC+Y CM    G   + G K  ++HGKWPF R    QEP +   S LN
Sbjct:    6 ARLVLLAGAAALASGSQGDREPVYRDCVLRCEERNCSGG-ALKH--FRS-----------RQPIYMSLAGWTCRDDCKYECMWVTVGLYLQEGQKVPQFHGKWPFSRFLCFQEPASAVASFLN 114          
BLAST of EY735873 vs. ExPASy Swiss-Prot
Match: PER1_SCHPO (Protein PER1 homolog OS=Schizosaccharomyces pombe GN=SPAC823.07 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.765e-13
Identity = 42/120 (35.00%), Postives = 58/120 (48.33%), Query Frame = 3
Query:  228 ASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPIDGPWYLQEPLYLRWKQWDCSSDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGVDVL 587
            AS GD  P+Y  CV +C +  C G+         SD   +        PL L+  +WDC S+C Y C +  E           +YHGKW F RV+GIQE  +V  S LN  I ++G  ++
Sbjct:   24 ASAGDLHPVYVSCVNRCIENKCHGNP--------SDTSKL--------PLDLKLFRWDCGSNCGYECEITAENYFAAHNLPSQQYHGKWYFIRVFGIQELFSVFFSMLNFMIHYNGYHIM 127          

HSP 2 Score: 22.7126 bits (47), Expect = 1.765e-13
Identity = 7/18 (38.89%), Postives = 12/18 (66.67%), Query Frame = 2
Query:  665 SMGILAMNSWFWNAGFPV 718
            S  I+ MN+W W++ F +
Sbjct:  143 SWAIVGMNAWVWSSVFHI 160          
BLAST of EY735873 vs. ExPASy Swiss-Prot
Match: PGAP3_DROME (Post-GPI attachment to proteins factor 3 OS=Drosophila melanogaster GN=CG3271 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.829e-13
Identity = 43/135 (31.85%), Postives = 67/135 (49.63%), Query Frame = 3
Query:  165 MAHSHLIALFLLISCTLPALYASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPID--GPWYLQEPLYLRWKQWDCSSDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSI 563
            M+   L A+ LL+   + A  AS+GD    +  C + CE+T C           S+DG  I      + Q+ ++ R  QW C+ +C+Y CM        + G    +++GKWPF R+ G+QEP +V  S LN  +
Sbjct:    1 MSSRSLSAIVLLLGALVTACLASNGDRTQFFHNCRQNCERTNC-----------SADGLEIQEQAVKFYQQSVFDRLFQWSCADECQYGCMWRTVFAFFERGWPIPQFYGKWPFLRLLGMQEPASVIFSCLNFVV 124          
The following BLAST results are available for this feature:
BLAST of EY735873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PGAP3_CRIGR2.531e-1635.77Post-GPI attachment to proteins factor 3 OS=Cricet... [more]
PGAP3_MOUSE2.678e-1534.96Post-GPI attachment to proteins factor 3 OS=Mus mu... [more]
PGAP3_XENTR1.290e-1435.78Post-GPI attachment to proteins factor 3 OS=Xenopu... [more]
PGAP3_XENLA1.676e-1437.61Post-GPI attachment to proteins factor 3 OS=Xenopu... [more]
PGAP3_HUMAN2.822e-1434.40Post-GPI attachment to proteins factor 3 OS=Homo s... [more]
PGAP3_DANRE1.047e-1333.94Post-GPI attachment to proteins factor 3 OS=Danio ... [more]
PGAP3_BOVIN1.072e-1333.33Post-GPI attachment to proteins factor 3 OS=Bos ta... [more]
PER1_SCHPO1.765e-1335.00Protein PER1 homolog OS=Schizosaccharomyces pombe ... [more]
PGAP3_DROME1.829e-1331.85Post-GPI attachment to proteins factor 3 OS=Drosop... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-007-B11-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735873 ID=EY735873; Name=EY735873; organism=Citrus sinensis; type=EST; length=824bp
CCACGCGTCCGCCCACGCGTCCGCTTCTCTCTCCCACCGAGTCTAAATTC
CAACAACTCAACTCCTCACTCGCTCTTGTAACAAAACTCAAATCACCGGA
GCGTCGATTATGTAGAAAATCTCTTAAAACGTTCCTCTGTTGACTTCCAC
TTTACACGATTCAGATGGCTCACAGTCACTTAATTGCTCTCTTTCTTTTA
ATTTCATGTACGCTTCCAGCTCTCTACGCAAGCGACGGTGACGCTGATCC
GATTTACAAGGGTTGTGTGGAGCAGTGTGAGAAAACTGGATGCGTGGGGG
ACAAATGCTTCCAACACTGTAACTTTTCATCTGATGGAAAACCTATTGAT
GGGCCATGGTATCTGCAAGAACCACTCTATCTCCGGTGGAAACAATGGGA
TTGCAGCAGTGACTGTCGATATCACTGTATGCTTGCTAGGGAAGGGGAGA
GAGAAAAAGTTGGTGACAAGCCTGTCAAGTATCATGGGAAATGGCCATTC
CGCCGTGTGTACGGAATTCAGGAACCCGTTGCTGTTGCTCTCTCTGCACT
CAATCTTTCCATACAATTTCATGGGGTGGATGTCCTTCTTCATCCTTCTG
TACTATAAGTTGCCTTTGAGACCAGATGAGAAAACTTATTACGAATATAC
TGGTTTATGGGACATCTATGGGCATCCTAGCAATGAACTCCTGGTTCTGG
AATGCTGGTTTCCCAGTCGACATGTGGAATTGAAAAAGAAGCCCGATTGG
TCTTCCTGGGAGTACATTACTGGGTTGAATGGCATTCTAGGCATGCTGCC
ACTTTCACCGTCAAAGAGAAGGCT
back to top