EY735859

Overview
NameEY735859
Unique NameEY735859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4206 contig Csv1_Contig4206:811..1613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY735859 vs. ExPASy Swiss-Prot
Match: IF4A3_NICPL (Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 3.402e-79
Identity = 144/150 (96.00%), Postives = 145/150 (96.67%), Query Frame = 2 
Query:   11 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 460
            EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLT KMR  NFTVSSMHGDMPQKERDAIM EFR GTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK+DDIKILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  242 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTSKMRENNFTVSSMHGDMPQKERDAIMAEFRGGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 391
[Close]
BLAST of EY735859 vs. ExPASy Swiss-Prot
Match: RH34_ORYSJ (DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sativa subsp. japonica GN=Os03g0566800 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 5.803e-79
Identity = 142/150 (94.67%), Postives = 146/150 (97.33%), Query Frame = 2 
Query:   11 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 460
            EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTE+MR  NFTVS+MHGDMPQKERDAIMGEFRSG TRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK +DI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  255 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILRDIEQYYSTQIDEMPMNVADLI 404
[Close]
BLAST of EY735859 vs. ExPASy Swiss-Prot
Match: RH2_ORYSJ (DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sativa subsp. japonica GN=Os01g0639100 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 5.803e-79
Identity = 142/150 (94.67%), Postives = 146/150 (97.33%), Query Frame = 2 
Query:   11 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 460
            EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTE+MR  NFTVS+MHGDMPQKERDAIMGEFRSG TRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK +DI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  255 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILRDIEQYYSTQIDEMPMNVADLI 404
[Close]
BLAST of EY735859 vs. ExPASy Swiss-Prot
Match: RH2_ARATH (DEAD-box ATP-dependent RNA helicase 2 OS=Arabidopsis thaliana GN=RH2 PE=2 SV=2)

HSP 1 Score: 291.197 bits (744), Expect = 4.913e-78
Identity = 141/150 (94.00%), Postives = 147/150 (98.00%), Query Frame = 2 
Query:   11 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 460
            EWKFDTLCDLYDTLTITQAVIFCNTKRKVD+L+EKMR +NFTVSSMHGDMPQKERDAIM EFRSG +RVLITTDVWARG+DVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK+DDIKILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  259 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 408
[Close]
BLAST of EY735859 vs. ExPASy Swiss-Prot
Match: IF4A3_DANRE (Eukaryotic initiation factor 4A-III OS=Danio rerio GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 7.094e-77
Identity = 138/150 (92.00%), Postives = 145/150 (96.67%), Query Frame = 2 
Query:   11 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 460
            EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR  NFTVSSMHGDMPQKER++IM EFRSG +RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  257 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVSQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 406
[Close]
BLAST of EY735859 vs. ExPASy Swiss-Prot
Match: IF4A3_XENTR (Eukaryotic initiation factor 4A-III OS=Xenopus tropicalis GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 9.265e-77
Identity = 138/150 (92.00%), Postives = 145/150 (96.67%), Query Frame = 2 
Query:   11 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 460
            EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR  NFTVSSMHGDMPQKER++IM EFRSG +RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  266 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 415
[Close]
BLAST of EY735859 vs. ExPASy Swiss-Prot
Match: IF4A3_TAEGU (Eukaryotic initiation factor 4A-III OS=Taeniopygia guttata GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 9.265e-77
Identity = 138/150 (92.00%), Postives = 145/150 (96.67%), Query Frame = 2 
Query:   11 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 460
            EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR  NFTVSSMHGDMPQKER++IM EFRSG +RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  261 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 410
[Close]
BLAST of EY735859 vs. ExPASy Swiss-Prot
Match: IF4A3_SALSA (Eukaryotic initiation factor 4A-III OS=Salmo salar GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 9.265e-77
Identity = 138/150 (92.00%), Postives = 145/150 (96.67%), Query Frame = 2 
Query:   11 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 460
            EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR  NFTVSSMHGDMPQKER++IM EFRSG +RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  257 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 406
[Close]
BLAST of EY735859 vs. ExPASy Swiss-Prot
Match: IF4A3_RAT (Eukaryotic initiation factor 4A-III OS=Rattus norvegicus GN=Eif4a3 PE=1 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 9.265e-77
Identity = 138/150 (92.00%), Postives = 145/150 (96.67%), Query Frame = 2 
Query:   11 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 460
            EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR  NFTVSSMHGDMPQKER++IM EFRSG +RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  262 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411
[Close]
BLAST of EY735859 vs. ExPASy Swiss-Prot
Match: IF4A3_PIG (Eukaryotic initiation factor 4A-III OS=Sus scrofa GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 9.265e-77
Identity = 138/150 (92.00%), Postives = 145/150 (96.67%), Query Frame = 2 
Query:   11 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 460
            EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR  NFTVSSMHGDMPQKER++IM EFRSG +RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  262 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411
The following BLAST results are available for this feature:
BLAST of EY735859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A3_NICPL3.402e-7996.00Eukaryotic initiation factor 4A-3 OS=Nicotiana plu... [more]
RH34_ORYSJ5.803e-7994.67DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sa... [more]
RH2_ORYSJ5.803e-7994.67DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sat... [more]
RH2_ARATH4.913e-7894.00DEAD-box ATP-dependent RNA helicase 2 OS=Arabidops... [more]
IF4A3_DANRE7.094e-7792.00Eukaryotic initiation factor 4A-III OS=Danio rerio... [more]
IF4A3_XENTR9.265e-7792.00Eukaryotic initiation factor 4A-III OS=Xenopus tro... [more]
IF4A3_TAEGU9.265e-7792.00Eukaryotic initiation factor 4A-III OS=Taeniopygia... [more]
IF4A3_SALSA9.265e-7792.00Eukaryotic initiation factor 4A-III OS=Salmo salar... [more]
IF4A3_RAT9.265e-7792.00Eukaryotic initiation factor 4A-III OS=Rattus norv... [more]
IF4A3_PIG9.265e-7792.00Eukaryotic initiation factor 4A-III OS=Sus scrofa ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-007-A08-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735859 ID=EY735859; Name=EY735859; organism=Citrus sinensis; type=EST; length=848bp
CCACGCGTCCGAGTGGAAGTTTGATACACTCTGTGATCTTTATGATACCC
TTACGATTACACAAGCTGTTATTTTCTGCAACACGAAGCGTAAGGTGGAT
TGGCTAACAGAGAAGATGCGCGGCTATAACTTTACTGTCTCATCAATGCA
TGGAGACATGCCTCAGAAGGAAAGAGATGCAATTATGGGAGAATTTCGGT
CTGGGACAACCCGTGTGCTCATCACAACTGATGTTTGGGCACGAGGACTT
GATGTTCAGCAGGTTTCTTTGGTGATAAATTATGACCTTCCTAACAATCG
TGAGCTTTATATTCACCGGATTGGTCGTTCTGGACGTTTTGGACGCAAGG
GTGTAGCAATAAATTTTGTCAAAAACGATGATATCAAGATTCTTAGAGAT
ATCGAGCAATATTACAGTACCCAGATTGATGAAATGCCAATGAATGTTGC
TGATCTGATATAAGAGATGTTTGTGATCTCGTCTGCCAGAGTGGAGGTTA
TGGGATTGATCAATGANAGGTTGAAGACAATTGTGTGATTGACAGTTTCT
GCAAGTGTGACATTGTCTTTGTTTTTGTGAGGAGTTTGTATAATACAGGA
TGTNCTCATATNTTCTGTATGGTATTGATGACAAGAAAAGAGAAGAGAGT
AGGCATTAACATTTGTGATAAGATTCTAGTGATTGCCTTTTGCACCTTGA
ACTGATTTTAAGGGTGGCGATTTGTTCACTGTTGAATTCAAGTTATTTTA
CCCCTTTTTGAAAGATTGTAAACACTCTGGAAAAAANANANGNNNNNNGN
NNNNNNGNNNNNNNNNNNANAAAAAAAAGGGCGGCCCCCTAAAGGATC
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