EY735851

Overview
NameEY735851
Unique NameEY735851
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY735851_ssr297 microsatellite EY735851_ssr297:297..308. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY735851 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 7.846e-66
Identity = 135/205 (65.85%), Postives = 155/205 (75.61%), Query Frame = 3
Query:  135 MASATLSVAKSALQGNGKGFSEFSGLRNSAS-LPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAK-LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIXVVSNRNPVNLPLGGLGHRPCD*RDRSVCKQRRCGQAHSGWCQESTYYSPPAG*HPTYVVGV 743
            MASAT SVAK A++ NGKGFSEFSGLRNS+  LPF RKSSDDFHS++  QT+A+GSS    + +  +AK LKVAINGFGRIGRNFLRCWHGRKDSPL+V+AINDTGGVKQASHLLKYDSTLGIF+ADVKPVGTDGISVDGKVI VVS+RNP NLP   LG             +   G+  +   ++    +P  G  PTYVVGV
Sbjct:    1 MASATFSVAKPAIKANGKGFSEFSGLRNSSRHLPFSRKSSDDFHSLVTFQTNAVGSSGGHKKSLVVEAKQLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIKVVSDRNPANLPWKELGIDLVIEGTGVFVDREGAGRHITAGAKKVLITAPGKGDIPTYVVGV 205          
BLAST of EY735851 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 8.976e-62
Identity = 129/215 (60.00%), Postives = 155/215 (72.09%), Query Frame = 3
Query:  165 SALQGNGKGFSEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIXVVSNRNPVNLPLGGLGHRPCD*RDRSVCKQRRCGQAHSGWCQESTYYSPPAG*HPTYVVGV-MRMRTTR*PVLGHGSWTTTGL 806
            S+LQ + KGFSEFSGLR S+++PFGRK++DD  SV+A QTS +G  +S  ++   +AKLKVAINGFGRIGRNFLRCWHGRKDSPL+V+AINDTGGVKQASHLLKYDSTLGIF+ADVKPVGTDGISVDGKVI VVS+RNPVNLP G LG             +   G+      ++    +P  G  PTYVVGV   +     P++ + S TT  L
Sbjct:    2 SSLQVSNKGFSEFSGLRTSSAIPFGRKTNDDLLSVVAFQTSVIGGGNS--KRGVVEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIQVVSDRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADLYNPDEPIISNASCTTNCL 214          
BLAST of EY735851 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 220.32 bits (560), Expect = 1.136e-56
Identity = 131/227 (57.71%), Postives = 154/227 (67.84%), Query Frame = 3
Query:  135 MASATLSVAKSALQGNGKGFSEFSGLRNS-ASLPFGRK-SSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIXVVSNRNPVNLPLGGLGHRPCD*RDRSVCKQRRCGQAHSGWCQESTYYSPPAG*HPTYVVGVMRMRTTR-*PVLGHGSWTTTGL 806
            MAS T SV K        GF+EFSGLR+S ASLPFG+K SSD+F S+++ QTSA+GSS  GYRK   +AKLKVAINGFGRIGRNFLRCWHGRKDSPL+++AINDTGGVKQASHLLKYDSTLGIF+ADVKP G   ISVDGK+I VVSNRNP  LP   LG             +   G+      ++    +P  G  PTYVVGV     +   P++ + S TT  L
Sbjct:    1 MASVTFSVPK--------GFTEFSGLRSSSASLPFGKKLSSDEFVSIVSFQTSAMGSSG-GYRKGVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCL 218          
BLAST of EY735851 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 8.444e-56
Identity = 84/138 (60.87%), Postives = 104/138 (75.36%), Query Frame = 3
Query:  195 SEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIXVVSNRNPVNLPLGGLG 608
            ++FSGLR+S S+ F R++S  FH VIA Q +   + ++  R     AKLKVAINGFGRIGRNFLRCWHGRKDSPL+VV +ND+GGVK A+HLLKYDS LG F+ADVK +  +  S+DGK I VVSNR+P+ LP   LG
Sbjct:   40 ADFSGLRSSNSVTFTREAS--FHDVIAAQLTTKPTGAAPVRGETV-AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKSATHLLKYDSILGTFKADVKIIDNETFSIDGKPIKVVSNRDPLKLPWAELG 174          

HSP 2 Score: 77.0258 bits (188), Expect = 8.444e-56
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query:  592 PWGDLGIDLVIEGTGVFVNREGAGKHIQAGAKKVLITAPRQGDIPPTLLV 741
            PW +LGID+VIEGTGVFV+  GAGKHIQAGAKKV+ITAP +G   PT +V
Sbjct:  169 PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGSDIPTYVV 218          
BLAST of EY735851 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 1.063e-54
Identity = 120/203 (59.11%), Postives = 138/203 (67.98%), Query Frame = 3
Query:  135 MASATLSVAKSALQGNGKGFSEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIXVVSNRNPVNLPLGGLGHRPCD*RDRSVCKQRRCGQAHSGWCQESTYYSPPAG*HPTYVVGV 743
            MAS  LS+A  +L+   KGFSEFSGL  S SLPFGRK SDD  + ++ QT+A+G   S    V  +AKLKVAINGFGRIGRNFLRCWHGRKDSPL+VV INDTGGVKQASHLLKYDS LG F+ADVK  G   ISVDGKVI VVS+RNPVNLP G +G             +   G+      ++    +P  G  PTYVVGV
Sbjct:    1 MASNMLSIANPSLRVYNKGFSEFSGLHTS-SLPFGRKGSDDLMAFVSFQTNAVGGKRSSQNGVV-EAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGV 201          
BLAST of EY735851 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 4.039e-54
Identity = 128/227 (56.39%), Postives = 151/227 (66.52%), Query Frame = 3
Query:  135 MASATLSVAKSALQGNGKGFSEFSGLRNSASLPFGRKS-SDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKD-SPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIXVVSNRNPVNLPLGGLGHRPCD*RDRSVCKQRRCGQAHSGWCQESTYYSPPAG*HPTYVVGV-MRMRTTR*PVLGHGSWTTTGL 806
            MAS+ LS     LQ  G G SEFSGLR+SASLP  R + SDDF S ++ +T A+G+S  G R+   +AKLKVAINGFGRIGRNFLRCWHGR D SPL+V+AINDTGGVKQASHLLKYDSTLGIF+ADVKPVG + ISVDGKVI VVS+RNP NLP G LG             +   G+      ++    +P  G  PTYVVGV         P++ + S TT  L
Sbjct:    1 MASSMLSATTVPLQQGG-GLSEFSGLRSSASLPMRRNATSDDFMSAVSFRTHAVGTSG-GPRRAPTEAKLKVAINGFGRIGRNFLRCWHGRGDASPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGDNAISVDGKVIKVVSDRNPSNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADQYNPDEPIISNASCTTNCL 225          
BLAST of EY735851 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 4.508e-54
Identity = 79/138 (57.25%), Postives = 104/138 (75.36%), Query Frame = 3
Query:  198 EFSGLRNSASLPFGRKSSDD-FHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIXVVSNRNPVNLPLGGLG 608
            EFSGL++++ + +   + D  F+ V+A Q ++  + S+  + V   AKLKVAINGFGRIGRNFLRCWHGRKDSPLEV+ +ND+GGVK ASHLLKYDS LG F+A+VK +  + I+VDGK I VVS+R+P+ LP   LG
Sbjct:   39 EFSGLKSTSCISYVHSARDSSFYDVVAAQLTSKANGSTAVKGVTV-AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGGVKNASHLLKYDSMLGTFKAEVKILNNETITVDGKPIKVVSSRDPLKLPWAELG 175          

HSP 2 Score: 75.8702 bits (185), Expect = 4.508e-54
Identity = 35/50 (70.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query:  592 PWGDLGIDLVIEGTGVFVNREGAGKHIQAGAKKVLITAPRQGDIPPTLLV 741
            PW +LGID+VIEGTGVFV+  GAGKHIQAGAKKV+ITAP +G   PT ++
Sbjct:  170 PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVI 219          
BLAST of EY735851 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.509e-54
Identity = 84/138 (60.87%), Postives = 101/138 (73.19%), Query Frame = 3
Query:  195 SEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIXVVSNRNPVNLPLGGLG 608
            +EF+GLR+S  + F  K S  F  V++ Q +   + S+   K    AKLKVAINGFGRIGRNFLRCWHGRKDSPL+VV +ND+GGVK ASHLLKYDS LG F+ADVK V  + ISVDGK I VVS+R+P+ LP   LG
Sbjct:    9 AEFAGLRSSGCVTFSNKESS-FFDVVSAQLTPKTTRSTPV-KGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDNETISVDGKHIKVVSSRDPLKLPWAELG 144          

HSP 2 Score: 76.2554 bits (186), Expect = 4.509e-54
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query:  592 PWGDLGIDLVIEGTGVFVNREGAGKHIQAGAKKVLITAPRQGDIPPTLLV 741
            PW +LGID+VIEGTGVFV+  GAGKHIQAGAKKV+ITAP +G   PT +V
Sbjct:  139 PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVV 188          
BLAST of EY735851 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 5.326e-52
Identity = 84/138 (60.87%), Postives = 100/138 (72.46%), Query Frame = 3
Query:  195 SEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIXVVSNRNPVNLPLGGLG 608
            +EFSGLR S+    G ++S  F   +A Q      ++S   +    AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVV +ND+GGVK ASHLLKYDS LG F+A+VK V  + ISVDGK+I VVSNR+P+ LP   LG
Sbjct:   39 AEFSGLRMSS---IGGEAS--FFDAVAAQIIPKAVTTSTPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVVLNDSGGVKNASHLLKYDSMLGTFKAEVKIVDNETISVDGKLIKVVSNRDPLKLPWAELG 171          

HSP 2 Score: 73.1738 bits (178), Expect = 5.326e-52
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1
Query:  592 PWGDLGIDLVIEGTGVFVNREGAGKHIQAGAKKVLITAPRQG-DIP 726
            PW +LGID+VIEGTGVFV+  GAGKHIQAGA KV+ITAP +G DIP
Sbjct:  166 PWAELGIDIVIEGTGVFVDGPGAGKHIQAGASKVIITAPAKGADIP 211          
BLAST of EY735851 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 4.741e-47
Identity = 73/112 (65.18%), Postives = 86/112 (76.79%), Query Frame = 3
Query:  282 TSALGSSSSGYRKVAAQA--------KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIXVVSNRNPVNLP 593
            T +  SS SG R  AA+A        K++VAINGFGRIGRNFLRCWHGR+++ L+VVAIND+GGVKQASHLLKYDSTLG F ADVK V    ISVDGK I +VS+R+P+ LP
Sbjct:   11 TGSAVSSKSGVRAKAARAVVDVRAEKKIRVAINGFGRIGRNFLRCWHGRQNTLLDVVAINDSGGVKQASHLLKYDSTLGTFAADVKIVDDSHISVDGKQIKIVSSRDPLQLP 122          

HSP 2 Score: 70.8626 bits (172), Expect = 4.741e-47
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:  592 PWGDLGIDLVIEGTGVFVNREGAGKHIQAGAKKVLITAPRQGDIPPTLLV 741
            PW ++ IDLVIEGTGVF+++ GAGKHIQAGA KVLITAP +    PT +V
Sbjct:  122 PWKEMNIDLVIEGTGVFIDKVGAGKHIQAGASKVLITAPAKDKDIPTFVV 171          
The following BLAST results are available for this feature:
BLAST of EY735851 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
G3PA_PEA7.846e-6665.85Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_TOBAC8.976e-6260.00Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_ARATH1.136e-5657.71Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_SPIOL8.444e-5660.87Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_SPIOL1.063e-5459.11Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_MAIZE4.039e-5456.39Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_PEA4.508e-5457.25Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_TOBAC4.509e-5460.87Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_ARATH5.326e-5260.87Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_CHLRE4.741e-4765.18Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-005-H10-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735851 ID=EY735851; Name=EY735851; organism=Citrus sinensis; type=EST; length=881bp
CCACGCGTCCGTCATCCCCCCCATTATTCATTAGTACTTGATCACATATA
ACATTTTCAAGCATCTTGTCTTGGCTTAGCTCAGCTTAGCGACCACTGCT
TGCTCTTGCTTGCATCATCCAGCAAATACCTATCATGGCTTCGGCCACTC
TCTCTGTAGCCAAATCAGCTCTTCAGGGAAATGGTAAGGGATTCTCAGAA
TTCTCAGGTCTACGCAACTCTGCAAGCCTTCCTTTTGGCAGGAAATCTTC
TGATGACTTCCATTCAGTCATTGCTCTCCAGACCTCTGCTTTAGGAAGCA
GCAGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAAGCTGAAGGTTGCA
ATCAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGAGGTGCTGGCACGG
CCGCAAGGACTCTCCACTTGAAGTCGTTGCCATCAATGACACCGGAGGTG
TCAAGCAGGCCTCTCACCTCCTCAAGTACGACTCCACCCTTGGCATCTTT
GAAGCCGATGTTAAACCAGTTGGTACTGATGGCATCTCTGTTGATGGCAA
GGTCATCCANGTTGTTTCTAACCGCAACCCCGTCAATCTCCCCCTGGGGG
GACTTGGGCATCGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAAACAG
AGAAGGTGCGGGCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTTATTA
CAGCCCCCCGGCAGGGTGACATCCCACCTACGTTGTTGGTGTCATGCGGA
TGCGTACAACCCGATGACCCGTTCTCGGGCATGGTTCCTGGACAACAACT
GGCTTGCCCCATCCGTCAGGGTTCTTACCGAAAGTTGGGCTTACCAGGGG
ACGAGGACCCCGCCGCCCGGACCGGGGGACC
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