EY735841

Overview
NameEY735841
Unique NameEY735841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY735841_ssr215 microsatellite EY735841_ssr215:215..226. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig890 contig Csv1_Contig890:581..1434. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY735841 vs. ExPASy Swiss-Prot
Match: HDT2_MAIZE (Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.087e-22
Identity = 54/99 (54.55%), Postives = 70/99 (70.71%), Query Frame = 3
Query:  420 TPKKAESSKKRPVESASKTYVPDKKAKFVTP--QKTEEKKGVSHIATPHPSKKSAKTPANNDQTKQQPHKSGGSFPCKSCNRSFTTEXWFAISYKSQAR 710
            TPKK E+ KKR  E+A KT + DKKAK  TP  QKT  KKG +H+ATPHP+K   KTPANND+  ++  KSGGS PCKSC+++F +E   A+   S+A+
Sbjct:  205 TPKKPEAGKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK--GKTPANNDKLTEKSPKSGGSVPCKSCSKTFNSE--MALQAHSKAK 299          

HSP 2 Score: 24.2534 bits (51), Expect = 3.087e-22
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  682 LQSHTKAKHGA 714
            LQ+H+KAKHGA
Sbjct:  292 LQAHSKAKHGA 302          
BLAST of EY735841 vs. ExPASy Swiss-Prot
Match: HDT1_SOLCH (Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.730e-20
Identity = 54/102 (52.94%), Postives = 68/102 (66.67%), Query Frame = 3
Query:  420 TPKKAESSKKRPVESASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTPANNDQTKQQPHKSGGSFPCKSCNRSFTTEXWFAISYKSQARCSSMK 725
            TPKKAE +K+R  +SA+KT V DKKAK  TPQKT+ KKG  H+ATPHPSK+++KTP           KS GS  CK CNRSF +E   A+   S+A+ S+ K
Sbjct:  181 TPKKAEPAKRRKADSATKTPVTDKKAKLTTPQKTDGKKGGGHVATPHPSKQASKTP-----------KSAGSHHCKPCNRSFGSEG--ALDSHSKAKHSAGK 269          
BLAST of EY735841 vs. ExPASy Swiss-Prot
Match: HDT3_ARATH (Histone deacetylase HDT3 OS=Arabidopsis thaliana GN=HDT3 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.703e-19
Identity = 47/90 (52.22%), Postives = 58/90 (64.44%), Query Frame = 3
Query:  420 TPKKAESSKKRPVE-SASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTPANND----QTKQQPHKSGGSFPCKSCNRSFTTE 674
            TPKK E  KKR  E ++SK    +KKAKFVTPQKT+ KK   H+ATPHPSK++ K            +QQ  KS G+F CKSC R+FT+E
Sbjct:  190 TPKKPEEPKKRSAEPNSSKNPASNKKAKFVTPQKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSKQQQTPKSAGAFGCKSCTRTFTSE 279          

HSP 2 Score: 28.1054 bits (61), Expect = 1.703e-19
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  679 GLQSHTKAKHGAPA 720
            GLQSHTKAKH A A
Sbjct:  281 GLQSHTKAKHSAAA 294          
BLAST of EY735841 vs. ExPASy Swiss-Prot
Match: HDT1_SOYBN (Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.733e-18
Identity = 46/83 (55.42%), Postives = 54/83 (65.06%), Query Frame = 3
Query:  426 KKAESSKKRPVESASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTPANNDQTKQQPHKSGGSFPCKSCNRSFTTE 674
            KK +  KKRP ESA+KT +  KKAK  TP+KT+ KK V H+ATPHPSKK  KTP   + TK Q   S G   C SC +SFT E
Sbjct:  203 KKVDQGKKRPNESAAKTPISAKKAKTATPEKTDGKKSV-HVATPHPSKKGGKTP---NSTKGQTPNSAGQLSCASCKKSFTNE 281          

HSP 2 Score: 23.8682 bits (50), Expect = 6.733e-18
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 1
Query:  679 GLQSHTKAKHG 711
            GLQ H KAKHG
Sbjct:  283 GLQQHKKAKHG 293          
BLAST of EY735841 vs. ExPASy Swiss-Prot
Match: HDT1_MAIZE (Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.349e-17
Identity = 55/113 (48.67%), Postives = 72/113 (63.72%), Query Frame = 3
Query:  420 TPKKAESSKKRPVESAS-KTYVPDKKAKFVTP--QKTEEKKGVS-HIATPHPSKKSAKTPANNDQTKQQPH---KSGGSFPCKSCNRSFTTEXWFAISYKSQARCSSMKDGVE 737
            TPKK E  KKRP ES+  KT + DKKAK  TP  QKT  KKG + H+ATPHP+K   KT  NND++ + P    KSGGS PCK C++SF +E   A+   S+A+  + +  V+
Sbjct:  199 TPKKPEVGKKRPAESSVLKTPLSDKKAKVATPSSQKTGGKKGAAVHVATPHPAK--GKTIVNNDKSVKSPKSAPKSGGSVPCKPCSKSFISET--ALQAHSRAKMGASESQVQ 307          
BLAST of EY735841 vs. ExPASy Swiss-Prot
Match: HDT3_MAIZE (Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.097e-13
Identity = 47/90 (52.22%), Postives = 59/90 (65.56%), Query Frame = 3
Query:  420 TPKKAESSKKRPVESAS-KTYVPDKKAKFVTP--QKTEEKKGVS-HIATPHPSKKSAKTPANNDQTKQQPHKSGGS-FPCKSCNRSFTTE 674
            TPKK E  KKR  ES+  KT + DKKAK  TP  QKT  KKG + H+ATPHP+K   KT  NND++ + P  +  S  PCKSC++SF +E
Sbjct:  199 TPKKPEVGKKRAAESSVLKTPLSDKKAKVATPSSQKTGGKKGAAVHVATPHPAK--GKTIVNNDKSVKSPKSAPKSGVPCKSCSKSFISE 286          

HSP 2 Score: 21.1718 bits (43), Expect = 1.097e-13
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  685 QSHTKAKHG 711
            Q+H+KAKHG
Sbjct:  290 QAHSKAKHG 298          
BLAST of EY735841 vs. ExPASy Swiss-Prot
Match: HDT2_ARATH (Histone deacetylase HDT2 OS=Arabidopsis thaliana GN=HDT2 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.630e-12
Identity = 42/77 (54.55%), Postives = 49/77 (63.64%), Query Frame = 3
Query:  420 TPKKAES-SKKRPVESASKTYVPDKKAKFV-----TPQKTEEKKGVSHIATPHPSKKSAKTPANNDQTKQQPHKSGG 632
            TPKK E  +KKRP ES SKT V  KKAK       TPQKTEEKK   H ATPHP+KK  K+P N +Q+ +   +S G
Sbjct:  199 TPKKPEPINKKRPNESVSKTPVSGKKAKPAAAPASTPQKTEEKKKGGHTATPHPAKKGGKSPVNANQSPKSGGQSSG 275          
The following BLAST results are available for this feature:
BLAST of EY735841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
HDT2_MAIZE3.087e-2254.55Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 ... [more]
HDT1_SOLCH4.730e-2052.94Histone deacetylase HDT1 OS=Solanum chacoense GN=H... [more]
HDT3_ARATH1.703e-1952.22Histone deacetylase HDT3 OS=Arabidopsis thaliana G... [more]
HDT1_SOYBN6.733e-1855.42Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE... [more]
HDT1_MAIZE8.349e-1748.67Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 ... [more]
HDT3_MAIZE1.097e-1352.22Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 ... [more]
HDT2_ARATH3.630e-1254.55Histone deacetylase HDT2 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-005-G06-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735841 ID=EY735841; Name=EY735841; organism=Citrus sinensis; type=EST; length=854bp
CCACGCGTCCGAATTCTGACTCTGATGAAGACAAAATGGATATTCGGCTT
GTTAGTAATGGGAAACCCGAGTTACAGGCCAAACCTCTTTCTGAAAAGCC
CATTGCTGTCGAGCCCAGTGCTTCCACTGCTAAGCAGAATAAGAAGGATG
TTAAACCCAAACTGAAGGCCGATGGTAGTGATTCTGATGACAGTGATTTG
AACACTTCATCCTCTGATGATGATGAGACCAGTGATGATGAGATTTCCTT
GAGAAAGAATTTCATGCCCTATACCTGAGAAGGGTTAACCTGGCAGAATC
CAAATCTCGTTAATCGTGATGGTAGTAGTGATGAGAGTAGTGGAGAGCTT
GATGAAAGCGATGACGACGAAGATGATGAAGGCACTGATGAGAGCGAAAG
TGATGATGAAGATGAGGAGACCCCAAAGAAGGCTGAATCAAGCAAGAAGA
GACCTGTGGAGTCTGCTTCAAAAACCTATGTTCCTGACAAGAAGGCTAAA
TTTGTCACACCTCAAAAGACAGAGGAGAAGAAAGGGGTCAGTCACATTGC
AACTCCACACCCCTCAAAGAAGTCTGCTAAGACTCCTGCTAACAATGACC
AGACAAAGCAGCAGCCTCATAAATCAGGCGGTTCATTTCCCTGCAAATCA
TGCAATAGGTCATTTACCACTGAANGGTGGTTTGCAATCTCATACAAAAG
CCAAGCACGGTGCTCCAGCATGAAAGATGGCGTTGAAACGGCCTTTTGTG
CTTAGGTTACCTTACTGCTTCTCAGGGGAGGAATTTCGGGAAAAAAAAAA
TGGAAATGGATAGTTTAATGTAGGACAGCAATCTATTATGTGACTATTCT
ATAT
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