EY735838

Overview
NameEY735838
Unique NameEY735838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735838 vs. ExPASy Swiss-Prot
Match: PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.260e-27
Identity = 66/124 (53.23%), Postives = 75/124 (60.48%), Query Frame = 2
Query:   29 MAAITASVGTSSITPSVLVHKPSIVASSSPVLGLPAKAVKGKVRCSMEEKPSKQESKT--NVGXXXXXXXXXXXXXXXXXXXXLVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYA 394
            MA ITAS   S +  + LVH   +  SSSP+LGLP+   + KV CS+E KPS  E+ T  N                      LVD+RMSTEGTGLPFGLSNNLLGWIL GVFGLIWALY  YA
Sbjct:    1 MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTTNKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYA 124          
BLAST of EY735838 vs. ExPASy Swiss-Prot
Match: PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.954e-20
Identity = 63/123 (51.22%), Postives = 73/123 (59.35%), Query Frame = 2
Query:   29 MAAITASVGTSSITPSVLVHKPSIVASSSPVLGLPAKAVK-GKVRCSMEEKPSKQESKTNVGXXXXXXXXXXXXXXXXXXXX-LVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPY 391
            MA+ TAS  T S     L+ KP+ VA S+PVLGLP    K G VRCSME   +KQ + + +G                     LVD+RMSTEGTGLPFGLSNNLLGWIL GVFGLIW  +  Y
Sbjct:    1 MASFTASASTVSAARPALLLKPT-VAISAPVLGLPPMGKKKGGVRCSME---TKQGNVSVMGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVY 119          
BLAST of EY735838 vs. ExPASy Swiss-Prot
Match: PSBW_ORYSJ (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.051e-13
Identity = 50/123 (40.65%), Postives = 62/123 (50.41%), Query Frame = 2
Query:   29 MAAITASVGTSSITPSVLVHKPSIVASSSPVLGLPAKAVKG--KVRCSMEEKPSKQESKTNVGXXXXXXXXXXXXXXXXXXXXLVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPY 391
            MA ++A+  TS +  +VL             LGLP    +   +VRC+     SK+ +                         LVD+RMSTEGTGL  GLSNNLLGWILLGVFGLIW+LY  Y
Sbjct:    1 MATVSAAAATSVVARAVLAGP----------LGLPQMRARRSERVRCNY----SKEAATPAAAVKGAGASLLAMAATAAPAMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIY 109          
The following BLAST results are available for this feature:
BLAST of EY735838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSBW_SPIOL7.260e-2753.23Photosystem II reaction center W protein, chloropl... [more]
PSBW_ARATH2.954e-2051.22Photosystem II reaction center W protein, chloropl... [more]
PSBW_ORYSJ2.051e-1340.65Photosystem II reaction center W protein, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-005-G02-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735838 ID=EY735838; Name=EY735838; organism=Citrus sinensis; type=EST; length=887bp
CCACGCGTCCGTTCCAACTCCAAGAAAAATGGCCGCCATCACTGCTAGCG
TAGGAACATCATCGATTACACCCTCGGTTCTTGTACACAAGCCATCCATT
GTAGCTTCATCATCCCCTGTTCTTGGATTGCCAGCAAAGGCAGTGAAGGG
GAAAGTGAGATGTTCGATGGAGGAAAAGCCTTCAAAGCAAGAGAGCAAAA
CAAACGTGGGAATGAGTGCGTCACTGCTGGCAGCAGCATGCGCGGCAACA
ATGTCAAGCCCAGCCATGGCTCTTGTTGATGATAGAATGAGCACTGAAGG
AACAGGGCTTCCATTTGGCTTGAGCAACAACCTCCTTGGGTGGATTCTGT
TGGGTGTTTTTGGTCTCATCTGGGCCCTCTACATTCCTTACGCTTCCAGT
CTTGATGAAGATGAAGAGTCCGGATTGTCCCTCTAACAGTCCGAAGTCTA
AAGCCAAACCCCTTGTTGGTAGAAATGTAAAGAGTTTGGCCTTTTTCCTT
AAATTTGTTTTAGTAAAAAAAAAAAAAAAAAAANNNNANNNNNNNNAAAA
AAANNNNAAAAAAAAGGNAAAAAAAAAAAAAAAAAAANNNNNAAAGGAAA
AAAAAAANAGAAAAGGGGGGGGCCGCTCAAAAGGAACCAAGTTTTATTTG
CGGTTGGTTGCAAAGGTAAAGCCCCTTCTAAAGGTGTCACCAAAATCCAA
TCCCGTGGGCCGGGTTTTAAAACGCCTCTGAAATGGGAAAAAACCTGGGG
GTTAACCCACTTATATCCCCCTTGGAGAAAACTACCCCCCTTGCGCGCAC
GGGGCGGTAAAAAGGAAAAAAGGGCCCGGCCGGTGTCCCCCTCCCACAAG
GTGTGGCCCCCCCGGAATGGGGGAGGGGGAGGCCCCC
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