EY735826

Overview
NameEY735826
Unique NameEY735826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: YPTV3_VOLCA (GTP-binding protein yptV3 OS=Volvox carteri GN=YPTV3 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.583e-35
Identity = 74/125 (59.20%), Postives = 93/125 (74.40%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILEDPSLLE 386
            KR KLTIWDTAGQERF TLTSSYYRGA GII VYDVTRR+TF +L + W +E ++YST +  +K++V NKVD  ++R V+ EEG   A+ H CLF+E SA+    V Q F++LL KIL+ P LLE
Sbjct:   56 KRCKLTIWDTAGQERFRTLTSSYYRGAQGIIFVYDVTRRDTFESLEANWMREFDIYSTVESAIKMVVANKVDLSAQRQVSSEEGHDFARRHGCLFVETSARANLAVGQAFEELLLKILDTPLLLE 180          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RB18B_DANRE (Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.340e-34
Identity = 77/149 (51.68%), Postives = 100/149 (67.11%), Query Frame = 3
Query:   15 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILEDPSLLEQGSAVVKNQILKQKEVQESARGGNC 461
            R KL IWDTAGQERF TLT SYYRGA G+ILVYDVT+R+TFT L + W  E+E Y T  D VK+LVGNK+D+D+ R V R EG+  A++H  LF+E SAK  + V+  F++L+ KIL+ P L E        Q+   +  ++ A GG C
Sbjct:   56 RAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTKRDTFTKLEN-WLNELETYCTRNDLVKMLVGNKIDKDN-REVDRNEGLKFARKHSMLFIEASAKTRDGVQCAFEELVEKILQTPGLWESSIQNHGVQLSDNEPQRQGACGGYC 202          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB18_CHICK (Ras-related protein Rab-18 OS=Gallus gallus GN=RAB18 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.649e-34
Identity = 76/149 (51.01%), Postives = 101/149 (67.79%), Query Frame = 3
Query:   15 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILEDPSLLEQGSAVVKNQILKQKEVQESARGGNC 461
            + KL IWDTAGQERF TLT SYYRGA G+ILVYDVTRR+TF  L + W  E+E Y T  D VK+LVGNK+D+++ R V R EG+  A++H  LF+E SAK  + V+  F++L+ KI++ P L E  S   +N+ +K    +E   GG C
Sbjct:   56 KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDN-WLNELETYCTRNDIVKMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESES---QNKGVKLSNKEEGHGGGAC 199          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB18_MOUSE (Ras-related protein Rab-18 OS=Mus musculus GN=Rab18 PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.935e-33
Identity = 75/149 (50.34%), Postives = 101/149 (67.79%), Query Frame = 3
Query:   15 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILEDPSLLEQGSAVVKNQILKQKEVQESARGGNC 461
            + KL IWDTAGQERF TLT SYYRGA G+ILVYDVTRR+TF  L + W  E+E Y T  D V +LVGNK+D+++ R V R EG+  A++H  LF+E SAK  + V+  F++L+ KI++ P L E  +   +N+ +K    +ES  GG C
Sbjct:   56 KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN---QNKGVKLSHREESRGGGAC 199          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB18_RAT (Ras-related protein Rab-18 OS=Rattus norvegicus GN=Rab18 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.300e-33
Identity = 75/149 (50.34%), Postives = 101/149 (67.79%), Query Frame = 3
Query:   15 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILEDPSLLEQGSAVVKNQILKQKEVQESARGGNC 461
            + KL IWDTAGQERF TLT SYYRGA G+ILVYDVTRR+TF  L + W  E+E Y T  D V +LVGNK+D+++ R V R EG+  A++H  LF+E SAK  + V+  F++L+ KI++ P L E  +   +N+ +K    +ES  GG C
Sbjct:   56 KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN---QNKGVKLSPREESHGGGAC 199          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB18_PONAB (Ras-related protein Rab-18 OS=Pongo abelii GN=RAB18 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.629e-33
Identity = 74/149 (49.66%), Postives = 100/149 (67.11%), Query Frame = 3
Query:   15 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILEDPSLLEQGSAVVKNQILKQKEVQESARGGNC 461
            + KL IWDTAGQERF TLT SYYRGA G+ILVYDVTRR+TF  L + W  E+E Y T  D V +LVGNK+D+++ R V R EG+  A++H  LF+E SAK  + V+  F++L+ KI++ P L E  +   +N+ +K    +E   GG C
Sbjct:   56 KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN---QNKGVKLSHREEGQGGGAC 199          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB18_HUMAN (Ras-related protein Rab-18 OS=Homo sapiens GN=RAB18 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.629e-33
Identity = 74/149 (49.66%), Postives = 100/149 (67.11%), Query Frame = 3
Query:   15 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILEDPSLLEQGSAVVKNQILKQKEVQESARGGNC 461
            + KL IWDTAGQERF TLT SYYRGA G+ILVYDVTRR+TF  L + W  E+E Y T  D V +LVGNK+D+++ R V R EG+  A++H  LF+E SAK  + V+  F++L+ KI++ P L E  +   +N+ +K    +E   GG C
Sbjct:   56 KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN---QNKGVKLSHREEGQGGGAC 199          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB18_BOVIN (Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.352e-33
Identity = 74/149 (49.66%), Postives = 100/149 (67.11%), Query Frame = 3
Query:   15 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILEDPSLLEQGSAVVKNQILKQKEVQESARGGNC 461
            + KL IWDTAGQERF TLT SYYRGA G+ILVYDVTRR+TF  L + W  E+E Y T  D V +LVGNK+D+++ R V R EG+  A++H  LF+E SAK  + V+  F++L+ KI++ P L E  +   +N+ +K    +E   GG C
Sbjct:   56 KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN---QNKGVKLTHREEGQGGGAC 199          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB18_DICDI (Ras-related protein Rab-18 OS=Dictyostelium discoideum GN=rab18 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.987e-31
Identity = 67/121 (55.37%), Postives = 90/121 (74.38%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILEDP 374
            K++ L IWDTAGQE+F  L SSYYRGAHGIIL YDVT+RE+F NL + W  EVE ++   + VK+LVGNK+D+++ R VTREEG   A++   LF+ECSAK+   ++Q F++L  KI+E P
Sbjct:   53 KKVDLCIWDTAGQEKFRALISSYYRGAHGIILTYDVTKRESFDNL-NYWLNEVENFANRSNLVKLLVGNKIDKEN-REVTREEGAEFAKKKAMLFIECSAKSKIGIQQAFEELAQKIIEIP 171          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RB18A_LYMST (Ras-related protein Rab-18A OS=Lymnaea stagnalis GN=RAB18A PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.174e-30
Identity = 66/127 (51.97%), Postives = 91/127 (71.65%), Query Frame = 3
Query:   15 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILEDPSLLEQGS 395
            + KL IWDTAGQERF TLT SYYRGA G+ILVYDV+ +++F  L + W  E+E +ST  D VK+LVGNK+DR +   VT++EG+  A++H  LF+E SAK  + V+  F++L+ KI++ P L E  S
Sbjct:   57 KTKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVSSKQSFNKLDA-WLNELETFSTKHDMVKMLVGNKIDR-ANHEVTKDEGLKFARKHHMLFIEASAKTNDGVQCAFEELVEKIIQTPGLWETSS 181          
The following BLAST results are available for this feature:
BLAST of EY735826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 432
Match NameE-valueIdentityDescription
YPTV3_VOLCA1.583e-3559.20GTP-binding protein yptV3 OS=Volvox carteri GN=YPT... [more]
RB18B_DANRE1.340e-3451.68Ras-related protein Rab-18-B OS=Danio rerio GN=rab... [more]
RAB18_CHICK6.649e-3451.01Ras-related protein Rab-18 OS=Gallus gallus GN=RAB... [more]
RAB18_MOUSE1.935e-3350.34Ras-related protein Rab-18 OS=Mus musculus GN=Rab1... [more]
RAB18_RAT3.300e-3350.34Ras-related protein Rab-18 OS=Rattus norvegicus GN... [more]
RAB18_PONAB5.629e-3349.66Ras-related protein Rab-18 OS=Pongo abelii GN=RAB1... [more]
RAB18_HUMAN5.629e-3349.66Ras-related protein Rab-18 OS=Homo sapiens GN=RAB1... [more]
RAB18_BOVIN7.352e-3349.66Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 ... [more]
RAB18_DICDI8.987e-3155.37Ras-related protein Rab-18 OS=Dictyostelium discoi... [more]
RB18A_LYMST1.174e-3051.97Ras-related protein Rab-18A OS=Lymnaea stagnalis G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-005-E10-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735826 ID=EY735826; Name=EY735826; organism=Citrus sinensis; type=EST; length=791bp
CCACGCGTCCGAAAAGACTGAAGCTGACAATTTGGGACACAGCTGGACAG
GAGAGATTTGGGACATTGACGAGCTCTTACTATAGAGGTGCACATGGAAT
TATCCTTGTTTATGACGTGACACGACGAGAAACCTTTACCAACTTGTCAA
GTGTATGGGCAAAGGAAGTAGAGCTTTACTCTACCAATCAAGATTGTGTC
AAAATTTTAGTGGGAAATAAAGTTGACAGGGATAGTGAAAGGGCTGTTAC
CAGAGAGGAGGGGATGATTCTTGCACAGGAGCATAAATGTTTGTTTCTTG
AATGTAGTGCTAAAAATACAGAACACGTGAAGCAGTGCTTTAAAGATCTC
TTATATAAGATTCTTGAGGATCCCAGTTTATTAGAACAAGGATCTGCAGT
GGTGAAGAATCAAATTTTGAAACAGAAAGAAGTCCAGGAATCGGCTCGTG
GTGGTAATTGCTGCTCTTAATTGATGCCCCCAACAAAGTGATTCAGCACA
AACATACTACCCGATAAATCAAAATGGAAGTCCAGAAACTATCAGCACAA
TTGGATGCGGGTGCTTAGATGGTTGAACACGATCCAGAATCGCATACATT
ACATGTATGGTCGAACATGCTCCAGAACCGGATCAAGGAAATGGGTGTTC
ATCGTAGAGTTTCGCGGGAGCGTGCGAGTAGCCGGAATCGTAGGGTGGAA
ACCGCGAGGGGCGGGTGCGCGTGGCATAAGGCGGTCATCTTGGCCCCATC
CTCAGCGGCATCGCGGCCGTGAGCCACTACATCCCCCTGCG
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