EY735798

Overview
NameEY735798
Unique NameEY735798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY735798_ssr586 microsatellite EY735798_ssr586:586..595. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY735798 vs. ExPASy Swiss-Prot
Match: SKI14_ARATH (F-box protein SKIP14 OS=Arabidopsis thaliana GN=SKIP14 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.122e-13
Identity = 56/139 (40.29%), Postives = 70/139 (50.36%), Query Frame = 3 
Query:   12 DISTTFTAAITGWLEDLEVDY----GGFRRDEVGTSDGNCQ-LFAGLNFFWNNAMRLQGFPNNMGYEHYLNVA--------------SGSSERFQAKEVVEEVSCHGGLASTCNVDDMFTFGNDNVGLVDQQSEALLEG 371
            DI+ TFTA ITGWLEDLE DY    G  RRD++   DGN Q LFAGL+FFWNNAM+ Q    + G E     A              SG +  F    +  + SCHG   S  +VD++ +  N   G V   S+    G
Sbjct:   58 DINNTFTA-ITGWLEDLEDDYNNQYGRRRRDDIWIGDGNRQQLFAGLSFFWNNAMQFQSSGYSYGSESLFGGAFDGSLFSTCKFPESSGENNGF-GGALDGDGSCHGAFISASSVDEVLSHENARNGEVVGSSDRCNNG 194
The following BLAST results are available for this feature:
BLAST of EY735798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKI14_ARATH1.122e-1340.29F-box protein SKIP14 OS=Arabidopsis thaliana GN=SK... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-005-C02-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735798 ID=EY735798; Name=EY735798; organism=Citrus sinensis; type=EST; length=852bp
CACGCGTCCGGGATATTAGTACTACCTTCACAGCTGCAATTACGGGGTGG
CTTGAGGATTTGGAGGTGGATTATGGTGGGTTTCGAAGGGATGAGGTTGG
GACAAGTGATGGTAATTGTCAGTTGTTTGCTGGTTTGAATTTCTTTTGGA
ATAATGCTATGAGGCTCCAGGGTTTTCCTAATAACATGGGTTATGAGCAT
TATTTGAATGTAGCAAGTGGATCTAGTGAGCGTTTTCAGGCAAAAGAAGT
TGTGGAGGAGGTGTCTTGTCATGGTGGTCTTGCATCAACTTGTAATGTGG
ATGACATGTTTACTTTTGGGAATGATAATGTCGGTCTTGTTGATCAGCAA
AGCGAAGCATTGTTGGAGGGTAACCGGACCTGTTGTGATGAAGAGGAAGG
GGGCTCCTGGTGCTGCTTTGATGTTGGCCCTTGCCTATCTGGGTCTGGNA
NATCTCCTGGTGCGTGCAGAGGTGTGGAGATCTTCTGTGCCGAGGGTGCA
GGATCACCCGCCCCCGCGGACGACTCTGGGAGTGATCGCCCTCGCCTCAC
GCTATGCTGAGGACCGTGCCGGGGCGCGGCCCGCCCGCGCGCGCGGCCGC
GCGTGCCCGACGCTGGGTCGGGGGGGGAGGGCGCCGGTGGGGGGGGGGGA
GGGGGGGAGGGGGGGGCTGCCGAGCGTGGGGCCTCGCCTGGTGCGTCCTG
GGGAGAGCGGGCCTTTGCGGGTGCCCGGGGGTGCGGGCGCGGGGCGCGGC
CTTGGCGGGCGGCCGGGGCGGGCGTCGGGGGGCGGGGGGGCTCGCCTCGC
TGTGCTCCCCCCATGGCGGTGTTTCGTGCGGGGGGCGGTGCGCGGGCCGC
GG
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