EY735742

Overview
NameEY735742
Unique NameEY735742
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12312 contig Csv1_Contig12312:1..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY735742 vs. ExPASy Swiss-Prot
Match: PSMD9_RAT (26S proteasome non-ATPase regulatory subunit 9 OS=Rattus norvegicus GN=Psmd9 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.214e-22
Identity = 64/225 (28.44%), Postives = 116/225 (51.56%), Query Frame = 3
Query:   96 AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDVSPAAEDGLQLGDQVLKFGTVEAGD-NLLKRLAAEGRKNQGNAVPVVIMXASGLINLAVTPRPWQGQGLLGCHFRMLQ 767
            ++I  LM ++  +EA + A  D L    G G++  LVD EG+PR D+D++ VR+ R  +  L+NDHK + +++ E +  LH          A+D         +    +   +  + N  +  +SPA       + + FA ++ I+  SPA+  GLQ+ D++++FG+V   +   L+ +    + ++G  + V+++       L +TP  W G+GLLGC+   LQ
Sbjct:   21 SDIQELMRRKEEIEAQIKANYDVLESQKGIGMNEPLVDCEGYPRADVDLYQVRTARHNIICLQNDHKALMKQVEEALHQLH----------ARD-------KEKQARDMAEAREEAMNRRLASDSPA-------LPKAFARVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLQNVGTVVQHSEGKPLNVMVIRRGEKHQLRLTPTRWAGKGLLGCNITPLQ 221          
BLAST of EY735742 vs. ExPASy Swiss-Prot
Match: PSMD9_MOUSE (26S proteasome non-ATPase regulatory subunit 9 OS=Mus musculus GN=Psmd9 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.435e-21
Identity = 62/225 (27.56%), Postives = 115/225 (51.11%), Query Frame = 3
Query:   96 AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDVSPAAEDGLQLGDQVLKFGTVEAGD-NLLKRLAAEGRKNQGNAVPVVIMXASGLINLAVTPRPWQGQGLLGCHFRMLQ 767
            ++I  LM ++  +EA++ A  D L    G G++  LVD EG+PR D+D++ VR+ R  +  L+NDHK + +++ E +  LH          A+D         +    +   +  + N  +  NSP       ++ + FA ++ I+  SPA+  GLQ+ D++++FG+V   +   ++ +    + ++G  + V ++       L + P  W G+GLLGC+   LQ
Sbjct:   21 SDIQDLMRRKEEIEAEIKANYDVLESQKGIGMNEPLVDCEGYPRADVDLYQVRTARHNIICLQNDHKALMKQVEEALHQLH----------ARD-------KEKQARDMAEAREEAMNRRLASNSP-------VLPQAFARVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSVQNVGTVVQHSEGKPLNVTVIRRGEKHQLRLIPTRWAGKGLLGCNIIPLQ 221          
BLAST of EY735742 vs. ExPASy Swiss-Prot
Match: PSMD9_DICDI (Probable 26S proteasome non-ATPase regulatory subunit 9 OS=Dictyostelium discoideum GN=psmD9 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.176e-21
Identity = 67/238 (28.15%), Postives = 123/238 (51.68%), Query Frame = 3
Query:  102 IMSLMEKRSALEADMNAIIDRLSQSNGP--GLSGNLVDSEGFPRTDIDIHL-VRSERRRLAELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDD-------GGSNNQNPSILGTVQSASFNNAVPRNSPAAMDVDVI-IRRPFAVIDEITDVSPAAEDGLQLGDQVLKFGTV-------EAGDNL----LKRLAAEGRKNQGNAVPVVIMXASGLINLAVTPRPWQGQGLLGC 749
            I +LM  R  LE ++ ++++ L   +G   GL G+  DSEG+P   +++ + V+  R R+A ++ND+K++ + I  +++ LH +     PT+   S            SNN N +    ++            P  ++V+V  +  PF  ID +++ SP+ +  L+ GD + +FGTV       + GDNL    L+ +A   R ++  A+ + +   + +I+ ++ PR W GQGL+GC
Sbjct:   25 IKTLMVTRGDLEKELESLMNFLKSGDGKTFGLKGSFTDSEGYPSPHLELIIEVKKARSRIAHIQNDYKQVMKDIEFHLEKLHKS-----PTNKNQSSSTFSINNTTSTSNNNNNNNEDEMKIDKPLTVETETKPKPIEVEVEKVGIPFVYIDLVSEGSPSDKANLKKGDLIFQFGTVGPFFEERQVGDNLNSNHLQSIATIVRNSENKAIQIKLSRGTSIISTSLIPRKWSGQGLIGC 257          
BLAST of EY735742 vs. ExPASy Swiss-Prot
Match: PSMD9_HUMAN (26S proteasome non-ATPase regulatory subunit 9 OS=Homo sapiens GN=PSMD9 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.587e-20
Identity = 62/234 (26.50%), Postives = 114/234 (48.72%), Query Frame = 3
Query:   69 AKMVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDVSPAAEDGLQLGDQVLKFGTVEAGD-NLLKRLAAEGRKNQGNAVPVVIMXASGLINLAVTPRPWQGQGLLGCHFRMLQ 767
            +   G    +++  LM ++  +EA + A  D L    G G++  LVD EG+PR+D+D++ VR+ R  +  L+NDHK + +++ E +  LH+          K + D   ++ +         S     +  +  P          R FA ++ I+  SPA+  GLQ+ D++++FG+V   +   L  + +  + ++G  + V ++       L + P  W G+GLLGC+   LQ
Sbjct:   12 SSQAGAVTVSDVQELMRRKEEIEAQIKANYDVLESQKGIGMNEPLVDCEGYPRSDVDLYQVRTARHNIICLQNDHKAVMKQVEEALHQLHAR------DKEKQARDMAEAHKE-------AMSRKLGQSESQGPP----------RAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLHNIGSVVQHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQ 222          
BLAST of EY735742 vs. ExPASy Swiss-Prot
Match: PSMD9_BOVIN (26S proteasome non-ATPase regulatory subunit 9 OS=Bos taurus GN=PSMD9 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.707e-20
Identity = 60/225 (26.67%), Postives = 113/225 (50.22%), Query Frame = 3
Query:   96 AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDVSPAAEDGLQLGDQVLKFGTVEAGD-NLLKRLAAEGRKNQGNAVPVVIMXASGLINLAVTPRPWQGQGLLGCHFRMLQ 767
            +++  L+ ++  +EA + A  + L    G G++  LVD EG+PR D+D++ VR+ R  +  L+NDHK + +++ + +  LH+           ++  +  S +Q+  +                SPA         + FA ++ I+  SPA+  GLQ+ D++L+FG+V   +   L+ + +  + ++G  + V +M       L + P  W G+GLLGC+   LQ
Sbjct:   21 SDVQELIRRKEEIEAQIKANYEVLESQKGIGMNEPLVDCEGYPRADVDLYQVRTARHNIVCLQNDHKAVMKQVEDALHQLHARDKEKQARDLAEAHREALSRDQSQGL----------------SPA---------QAFAKVNSISPGSPASIAGLQVDDEILEFGSVNTQNFQSLQNIGSVVQHSEGKPLNVTVMRRGEKHQLRLVPTRWAGKGLLGCNIIPLQ 220          
BLAST of EY735742 vs. ExPASy Swiss-Prot
Match: PSMD9_SCHPO (Probable 26S proteasome regulatory subunit p27 OS=Schizosaccharomyces pombe GN=nas2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.283e-16
Identity = 61/228 (26.75%), Postives = 105/228 (46.05%), Query Frame = 3
Query:  114 MEKRSALEADMNAIIDRLSQSNGPGLSGN------LVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDVDVIIR-RPFAVIDEITDVSPAAEDGLQLGDQVLKFGTVEAGDNLLKRLAAEGRKNQGNAVPVVIM------XASGLINLAVTPRPWQGQGLLGCHFR 758
            M++   L+     I +RL++  G  L         L+  +GFPR+DID+  +R+ R  +  LRNDH+E+ ++I + ++ + S               +  + N    +       +FN A    +       ++ R +PF V+D +   SPA E GL +GD+++    V +    L  L      N    + V+++       ++ L+ L +TP  WQG GLLGCH R
Sbjct:    1 MDEFKQLDLKKREIENRLNELEGVLLKERVTMDTPLLTEDGFPRSDIDVPSIRTARHEIITLRNDHRELEDQIKKVLEKVFSG-----------FSKESLAANDETKLAQEADPLNFNAANYNMNDIISRSKILGRVKPFCVVDSVAVESPAQEAGLCIGDELVHVQNVTS----LSELPTFISNNVNKTLDVLLIRGYSADGSTNLVELKLTPHKWQGPGLLGCHLR 213          
BLAST of EY735742 vs. ExPASy Swiss-Prot
Match: PSMD9_YEAST (Probable 26S proteasome regulatory subunit p27 OS=Saccharomyces cerevisiae GN=NAS2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.186e-13
Identity = 56/224 (25.00%), Postives = 100/224 (44.64%), Query Frame = 3
Query:   99 EIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDVSPAAEDGLQLGDQVLKFGTVEAGD-NLLKRLAAEGRKNQGNAVPVVIMXASGLINLAVTP-RPWQGQGLLGCHFRML 764
            ++  LM  ++ +E  + A    L Q  G G+   LV  +G+PR+D+D+  V   R+ +  L+ND       +N  +Q  H             S  D   NN + +I  T+                         PFA I E+   SP+ +  +++ D+++  G V A + + L+ +     KN+   +PV+++    ++  ++TP R W G+GLLGC  + L
Sbjct:   30 KLSELMVLKTDIETQLEAYFSVLEQQ-GIGMDSALVTPDGYPRSDVDVLQVTMIRKNVNMLKND-------LNHLLQRSHVLLNQHFDNMNVKSNQDARRNNDDQAIQYTI-------------------------PFAFISEVVPGSPSDKADIKVDDKLISIGNVHAANHSKLQNIQMVVMKNEDRPLPVLLLREGQILKTSLTPSRNWNGRGLLGCRIQEL 220          
The following BLAST results are available for this feature:
BLAST of EY735742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSMD9_RAT2.214e-2228.4426S proteasome non-ATPase regulatory subunit 9 OS=... [more]
PSMD9_MOUSE1.435e-2127.5626S proteasome non-ATPase regulatory subunit 9 OS=... [more]
PSMD9_DICDI4.176e-2128.15Probable 26S proteasome non-ATPase regulatory subu... [more]
PSMD9_HUMAN1.587e-2026.5026S proteasome non-ATPase regulatory subunit 9 OS=... [more]
PSMD9_BOVIN2.707e-2026.6726S proteasome non-ATPase regulatory subunit 9 OS=... [more]
PSMD9_SCHPO5.283e-1626.75Probable 26S proteasome regulatory subunit p27 OS=... [more]
PSMD9_YEAST4.186e-1325.00Probable 26S proteasome regulatory subunit p27 OS=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-004-D04-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735742 ID=EY735742; Name=EY735742; organism=Citrus sinensis; type=EST; length=844bp
CCACGCGTCCGGAAGCTTTGAATTCTCAGTCTGACAAGGCGGATTTTTTT
TTTTTTTAATCATTGAAAGCAAAAATGGTGGGAACAAATTTGAAAGCAGA
GATTATGAGTTTAATGGAGAAGCGAAGCGCCTTGGAAGCCGATATGAACG
CCATCATCGACCGCCTCAGCCAATCCAACGGCCCTGGTCTCTCCGGCAAT
CTCGTTGACTCTGAGGGTTTTCCTCGCACGGATATTGATATTCATCTTGT
GCGATCAGAACGGCGTCGTCTTGCCGAGCTGCGGAATGATCATAAGGAGA
TTACAGAGAAAATAAATGAAAATATACAGCTTTTGCATTCTGCAAGGCTC
GTTCCAGTTCCAACATCTGCCAAGGATTCAGGTGATGATGGCGGGTCAAA
TAATCAAAACCCATCAATTCTCGGCACTGTTCAATCTGCATCCTTTAATA
ATGCTGTCCCGAGAAATTCTCCTGCTGCCATGGATGTTGATGTGATCATA
AGAAGACCTTTTGCAGTAATTGATGAGATTACTGATGTCTCTCCAGCAGC
AGAAGATGGTTTACAGCTTGGAGATCAGGTCTTGAAATTTGGTACTGTGG
AAGCAGGTGATAACTTGCTAAAAAGGCTTGCGGCTGAAGGTCGGAAAAAT
CAGGGAAATGCAGTACCTGTGGTAATTATGANGGCAAGTGGACTCATCAA
TTTAGCAGTGACACCACGACCATGGCAGGGGCAGGGTTTATTGGGGTGTC
ATTTCCGAATGTTGCAGGTCGTCATGCATCCATGAGTAGCTTGGGAGATA
TGATTGTGGTTGCTTCTAGCTGATGAATCGGGTAAGACATGACT
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