EY735727

Overview
NameEY735727
Unique NameEY735727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY735727_ssr595 microsatellite EY735727_ssr595:595..606. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY735727 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.232e-27
Identity = 74/144 (51.39%), Postives = 98/144 (68.06%), Query Frame = 1
Query:  118 SVVAARVTGIR-KSGVYQFSSVK--YLPGTLQRNVSLSVRCMAKNEQQKDQ-----------STQPP-----KLPRISTKCSDVFAFSGPAPERINGRLAMIGFVAALAVELSNGQDVCAQLSDGGVAWFLGTSVLRAVASPLP 492
            S+++  +T I  +S V QF+++   Y+P TL+RNVSL VR MA+ E ++             ST  P     + P++STK SD+ AFSGPAPERINGRLAMIGFVAA+ VE++ GQ +  QLS GGVAWFLGTSVL ++AS +P
Sbjct:    8 SIMSNSMTNISSRSRVNQFTNIPSVYIP-TLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIP 150          
BLAST of EY735727 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.701e-16
Identity = 49/110 (44.55%), Postives = 64/110 (58.18%), Query Frame = 1
Query:  169 FSSVKYLP-GTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPRISTKCSDVFAFSGPAPERINGRLAMIGFVAALAVELSNGQDVCAQLSDG-GVAWFLGTSVLRAVASPLP 492
            F+    LP G+ +   +L  R +    Q +  +  PP  P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE   G  + +QL  G G AWF  T  + ++AS +P
Sbjct:   10 FAGAAVLPRGSARSLPALGRRTLVVRAQTEGPNAPPPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVP 119          
BLAST of EY735727 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.701e-16
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 1
Query:  199 LQRNVSLSVRCMAKN------EQQKDQSTQP------PKLPRISTKCS-DVFAFSGPAPERINGRLAMIGFVAALAVELSNGQDVCAQLSDGGVAWFLGTSVLRAVASPLP 492
            ++RN   +VR M ++      +QQK Q T        P    ++TK + D+F+F G APERINGR AMIGFVAA+ VEL+ G+DV +Q+ +GGV WFL TS +  +A+ +P
Sbjct:   41 MRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIP 151          
BLAST of EY735727 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.901e-16
Identity = 56/139 (40.29%), Postives = 74/139 (53.24%), Query Frame = 1
Query:   79 MAASLATQSMLGSSVVAARVTGIRKSGVYQFSSVKYLPGTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPRISTKCSDVFAFSGPAPERINGRLAMIGFVAALAVELSNGQDVCAQLSDG-GVAWFLGTSVLRAVASPLP 492
            MA  ++  S  G++VV        +S    F + + LP       +L  R +    Q +  S  PP  P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE   G  + +QL  G G AWF  T  + ++AS +P
Sbjct:    1 MATMMSMSSFAGAAVVP-------RSSASSFGA-RSLP-------ALGRRALVVRAQTEGPSAPPPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVP 124          
BLAST of EY735727 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.490e-12
Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 1
Query:  265 TQPPKLPRISTKCS-----DVFAFSGPAPERINGRLAMIGFVAALAVELSNGQDVCAQLS--DGGVAWFLGTSVLRAVASPLP 492
            T  P  P+  TK +     D  AFSGPAPERINGRLAM+GFVAAL+VE + G  +  Q+     G+AWFL T+ + +VAS LP
Sbjct:  101 TTIPAAPKPVTKKANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLP 183          
The following BLAST results are available for this feature:
BLAST of EY735727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ELI_PEA6.232e-2751.39Early light-induced protein, chloroplastic OS=Pisu... [more]
ELI6_HORVU1.701e-1644.55Low molecular mass early light-inducible protein H... [more]
DS22_CRAPL1.701e-1645.05Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI9_HORVU2.901e-1640.29Low molecular mass early light-inducible protein H... [more]
ELI5_HORVU1.490e-1251.81High molecular mass early light-inducible protein ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-004-C01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735727 ID=EY735727; Name=EY735727; organism=Citrus sinensis; type=EST; length=805bp
CCACGCGTCCGGTAAGGAGCCCATTAACCTAAAAACTCCCAGTTGCTAAA
TTATTCCTCCGTTGCATAATCTACAAAAATGGCTGCTTCACTCGCCACTC
AATCTATGCTTGGAAGCTCTGTCGTCGCAGCTCGTGTTACCGGCATCAGG
AAATCTGGGGTGTACCAATTTTCCTCTGTTAAGTACTTACCTGGTACTCT
GCAGAGAAATGTTAGCTTATCAGTGCGCTGCATGGCTAAGAATGAGCAGC
AGAAGGATCAATCAACTCAGCCACCAAAGCTACCGCGTATAAGCACGAAG
TGCTCTGACGTGTTTGCGTTCAGCGGGCCGGCACCGGAGAGGATAAACGG
GAGGCTTGCGATGATTGGGTTCGTGGCTGCATTGGCGGTGGAGCTATCCA
ATGGTCAGGATGTGTGTGCCCAATTATCAGACGGTGGAGTTGCCTGGTTC
TTGGGGACCAGTGTGCTGCGTGCGGTTGCGTCGCCGCTTCCTGGGGTTAA
AAGGTGTCCGCGTGGAGTCTATATCGGACTGGGGTTCCGAACTCGGCAGG
CGCGGTGGCGGAAGGGCAGGGGCGGTGTGGGGGGGGCGGTGGCTGGCGGC
GGCGGCGGGGTGGGCGAGGGGAAGAACCCGGGGGAGGGAAGGCCAAGTCC
CCCCTGATATGCGACCTGGGAAGTCCGGCGGAGAGAACAGCCGGGGTCAG
GGGGCGCGGGGGGGGCCGGAGGGGTGGGGGGGCGCGGCCGAGGGGGGGGG
GGGGGGGGGTTGGGGAGGGGGAAGGGCCAACACCCCACCACCGCCCAGCG
ACCAC
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