EY735666

Overview
NameEY735666
Unique NameEY735666
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY735666_ssr827 microsatellite EY735666_ssr827:827..842. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY735666 vs. ExPASy Swiss-Prot
Match: Y1960_ARATH (Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.091e-39
Identity = 80/121 (66.12%), Postives = 93/121 (76.86%), Query Frame = 1 
Query:   13 LFKDGRFRWNRLENLLVQGRKDRDFSAKDALQPVXXXXXXXXXXXXXXXVIKESVRVTEAVVLGAVIDTYNSMPDFMRSLVFTGSRRGPLLMSDTELEKVIELRDQVFRIWGLLRSSENFD 375
            LFKDG+FRWNRLENLL QG KDRDFSAKDALQPV               VIKE+VRV+EA+ LG V+DTYNS+P+F+RSLVF G+  GPL MS  EL+  +ELRDQV RIWGLL+SSE+FD
Sbjct:  540 LFKDGKFRWNRLENLLQQGSKDRDFSAKDALQPVLKLLLDPNGEELRLLVIKEAVRVSEAIALGTVVDTYNSLPEFLRSLVFNGNGNGPLTMSTAELQSTLELRDQVSRIWGLLQSSESFD 660
The following BLAST results are available for this feature:
BLAST of EY735666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1960_ARATH2.091e-3966.12Uncharacterized aarF domain-containing protein kin... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-003-D12-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735666 ID=EY735666; Name=EY735666; organism=Citrus sinensis; type=EST; length=865bp
CCACGCGTCCGGCTTTTCAAGGATGGGAGATTTAGGTGGAATAGGCTTGA
AAACCTACTTGTTCAGGGAAGAAAAGATAGAGATTTCTCTGCAAAAGATG
CTTTACAACCCGTTCTGAAGCTTTTACTGGGTCCAGAGGGTGAAGAGCTC
AGGACGTTAGTCATTAAGGAGTCTGTCCGTGTAACTGAGGCTGTTGTTCT
GGGAGCTGTTATTGATACTTACAATTCTATGCCTGATTTTATGCGTAGTC
TAGTTTTCACTGGCAGCAGAAGGGGGCCTCTTTTGATGAGTGATACTGAA
TTAGAAAAAGTGATAGAGCTTCGGGATCAGGTTTTTAGAATATGGGGGCT
TCTACGATCGTCTGAAAATTTTGATCCAACCTTGTTGCAACCTATATTAC
AGGTGCTTCAACAACCTGAGGGACGTATTCTGGGAGGTCGTGTTGTGGGT
GGGATCACACAACGTCTCGCAGCACGACTTCTGCAACAAGTTCTCCGAAC
TCCAGCAACAGGTTCTGCTTCAATTGACTGAGCACTTGTAACAACTATTG
CTGATCCAGTACATGTATGTTATATAATTGAGAATGTGCTTGAAGGAATT
CCTGACCATTCGTTGGTGAAGTGGATGTCTCATAGAAGAGAGCCGGATAT
GATGGATCCGCGCTCGCGTGCTGACGGTTGGGGGGGGGGTGAGAGTGTGT
ATGGCTGTGCCCGGTGGGAGCGGCACCTTCCCGGAATGAGCGGCGGGATG
GGTGGCGGGGCGGGCGGGGTGGGGTTGGGATGGGGTGTGGTGGGACTCGG
TGGGGCCGCGGGCGCTGCTCGCGCGTGGGCGGGCGGGCGGGCTCCAACCC
GCCTGCGGCGCCCCC
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