EY735652

Overview
NameEY735652
Unique NameEY735652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7563 contig Csv1_Contig7563:163..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY735652 vs. ExPASy Swiss-Prot
Match: LBD37_ARATH (LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.514e-68
Identity = 137/226 (60.62%), Postives = 157/226 (69.47%), Query Frame = 2
Query:   14 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCG---GSPTPTSDDVSEAEVTCTDMSRLQDXXXXXXXXXXXXXXXXXXXXXXXXXEE-------SAMKLQQSDLDLRLTPRFTGK--VPPEVRRRTXTPSMNSEESXHTT 655
            MSCNGCRVLRKGCSE+CILRPC+QWIE+ ++QGHATVFVAKFFGRAGLMSFISAVP+SQRPALFQSLLYEACGRTVNPVNGA+G+LWTGNW++CQAAVETVLRGG+LRP+PELL   G   G P+PTS++ SE    CT+M  LQ                                   S+     S+LDL L P F  K   P   RRR+ TPSMNSE+S  TT
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQRPALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPELLTHGGGFAGFPSPTSEEASE---ICTEMLNLQQNDSTDRNIYHHSRFSSSRSRSTMDSSSPTKRKRLSSEDQPSSELDLSLIPNFPIKQATPSSTRRRSVTPSMNSEDSGTTT 223          
BLAST of EY735652 vs. ExPASy Swiss-Prot
Match: LBD38_ARATH (LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.855e-67
Identity = 139/227 (61.23%), Postives = 157/227 (69.16%), Query Frame = 2
Query:   14 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCG--GSPTPTSDDVSEAEVTCTDMSRLQDXXXXXXXXXXXXXXXXXXXXXXXXXEE-------SAMKLQQSDLDLRLTPRFTGKVPPEVRRRTXTPSMNSEESXHTTCFES 667
            MSCNGCRVLRKGCSE+CILRPC+QWIESPE+QGHATVFVAKFFGRAGLMSFISAVPESQ PALFQSLLYEACGRTVNPVNGAVGLLWTGNW+VCQAAVETVLRGG+L+P+PELLN  G  G P+PTSD+ SE    CT+M  L+                                   S+ +   S+LDL L P +  K  P    +  TPSM SEES  T  F++
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFAGFPSPTSDEASE---ICTEMLNLRKADDSGDRNIYHHCRFSSSRSRSRSTASPPKRKRLSSEQQPSSELDLSLIPIYPIKTLP---FKEDTPSMYSEESVTTVSFQN 221          
BLAST of EY735652 vs. ExPASy Swiss-Prot
Match: LBD39_ARATH (LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.738e-59
Identity = 127/225 (56.44%), Postives = 146/225 (64.89%), Query Frame = 2
Query:   14 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCGGSPTPTSDDVSEAEVTCTDMSRLQDXXXXXXXXXXXXXXXXXXXXXXXXXEESAMKLQ-QSDLDLRLTPRFTGKVPPEVRRRT---XTPSMNSEESXHTTCFESGVK 676
            MSCNGCRVLRKGCSE+CILRPCLQWIES ESQGHATVFVAKFFGRAGLMSFIS+VPE QRPALFQSLL+EACGRTVNPVNGAVG+LWT NWHVCQAAVETVLRGGTLRP+ +LL     SP+        +E+   D+SR Q                           +S + LQ    L L         +PP    +      P   SEES  T+C+E+G++
Sbjct:    1 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQRPALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPISDLLE----SPSLMISCDESSEIWHQDVSRNQTHHCRFSTSRSTTEMKDSLVNRKRLKSDSDLDLQVNHGLTLTAPAVPVPFLPPSSFCKVVKGDRPGSPSEESVTTSCWENGMR 221          
BLAST of EY735652 vs. ExPASy Swiss-Prot
Match: LBD40_ARATH (LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.436e-44
Identity = 77/110 (70.00%), Postives = 96/110 (87.27%), Query Frame = 2
Query:   14 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPV 343
            MSCNGCRVLRKGCSE+C +RPCLQWI+S ESQ +ATVF+AKF+GRAGLM+ ++  P+  RPA+F+SLLYEACGR VNP+ G+VGLLW+GNWH+CQAAVE V+RG  + P+
Sbjct:    3 MSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPI 112          
BLAST of EY735652 vs. ExPASy Swiss-Prot
Match: LBD41_ARATH (LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.023e-40
Identity = 74/121 (61.16%), Postives = 95/121 (78.51%), Query Frame = 2
Query:   14 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCGGSP 376
            MSCNGCRVLRKGCSE C +RPCL WI+SPE+Q +ATVF+AKF+GRAGLM+ I+A P   RP +F+SLL+EACGR VNP+ G+VGLLW+GNW +CQ AVE V++G  ++ +     + G  P
Sbjct:    3 MSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAATIGQGP 123          
BLAST of EY735652 vs. ExPASy Swiss-Prot
Match: LBD42_ARATH (LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.290e-39
Identity = 70/111 (63.06%), Postives = 92/111 (82.88%), Query Frame = 2
Query:   14 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVP 346
            +SCNGCRVLRKGC++ C +RPCLQWI+S +SQ +AT+F+AKF+GRAGL++ I + P+  RPA+F+SLLYEACGR VNPV+G+VGL+W+GNW  CQAAV+ VL G  +   P
Sbjct:    3 ISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTP 113          
The following BLAST results are available for this feature:
BLAST of EY735652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LBD37_ARATH1.514e-6860.62LOB domain-containing protein 37 OS=Arabidopsis th... [more]
LBD38_ARATH2.855e-6761.23LOB domain-containing protein 38 OS=Arabidopsis th... [more]
LBD39_ARATH3.738e-5956.44LOB domain-containing protein 39 OS=Arabidopsis th... [more]
LBD40_ARATH4.436e-4470.00LOB domain-containing protein 40 OS=Arabidopsis th... [more]
LBD41_ARATH1.023e-4061.16LOB domain-containing protein 41 OS=Arabidopsis th... [more]
LBD42_ARATH3.290e-3963.06LOB domain-containing protein 42 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-003-C08-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735652 ID=EY735652; Name=EY735652; organism=Citrus sinensis; type=EST; length=821bp
CACGCGTCCGGAGATGAGTTGCAACGGATGCCGAGTTTTGCGAAAAGGAT
GCAGCGAGTCGTGTATTTTACGTCCTTGTTTACAGTGGATCGAGAGTCCT
GAATCCCAAGGCCACGCTACTGTGTTCGTCGCCAAATTCTTTGGCCGTGC
TGGCCTCATGTCCTTCATCTCGGCTGTCCCTGAATCCCAGCGTCCTGCGT
TGTTTCAGTCTTTGTTGTACGAAGCCTGTGGCCGAACTGTGAATCCTGTG
AATGGAGCTGTAGGTCTTTTGTGGACGGGGAACTGGCATGTTTGCCAGGC
TGCCGTGGAAACTGTCCTCCGAGGCGGCACGTTGCGTCCGGTGCCGGAGC
TTCTCAACAGCTGCGGCGGATCGCCAACACCAACTTCCGACGATGTATCG
GAAGCTGAAGTGACTTGCACGGACATGTCTAGGTTGCAAGATCGGTCGTT
TCCAAGTTCTCATTGTAGATTCTCGAGTTCAAGATCCAAGGTGTCACCAG
CTAAACGTAAGAGAGTGGAAGAATCAGCAATGAAATTGCAACAGTCAGAT
CTGGATCTTCGCTTGACGCCAAGGTTTACGGGCAAGGTTCCGCCGGAAGT
CAGGCGGCGAACTGNTACTCCGTCGATGAATTCGGAGGAATCANGGCACA
CTACGTGCTTCGAAAGTGGGGTAAAGATCATCGATATCTCCATGGAACTG
AGGAGAGGAAATTACTCAACTTGTTCCTTTGAACCGAATTGATCCTCAAT
TAAGTGCTTCCCCTTTGTACTCCTGTGGATTTATTTTCCCGAAGAGGAGT
CGGCCGGTCAGCCCGGAGTGT
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