EY735640

Overview
NameEY735640
Unique NameEY735640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY735640_ssr236 microsatellite EY735640_ssr236:236..247. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7363 contig Csv1_Contig7363:253..1043. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY735640 vs. ExPASy Swiss-Prot
Match: AGD12_ARATH (ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.322e-71
Identity = 131/177 (74.01%), Postives = 154/177 (87.01%), Query Frame = 3
Query:  261 LGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI-----ASXKPSASLQSSFSRKIIDSFRSTNSSQKKDV-GMVEFIGLIE 773
            LGKP SGK R++DLL Q DNR+CADCGAPDPKWASANIGVFICLKCCGVHRSLG+H+SKVLSVTLD+WSD+EVD+MIE+GGN+SAN+IYEAFIPEG SKPGPD+SH+ R +FIRSKYE QEFLKPSLRI     +S K  A L SS S+KI+DSFR+ +SSQ+  + GMVEFIGL++
Sbjct:    8 LGKPGSGKRRIRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPDASHDQRMRFIRSKYEHQEFLKPSLRITSVRGSSTKTPAFLSSSLSKKIVDSFRTNSSSQQPQLEGMVEFIGLLK 184          
BLAST of EY735640 vs. ExPASy Swiss-Prot
Match: AGD13_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 4.841e-69
Identity = 130/182 (71.43%), Postives = 152/182 (83.52%), Query Frame = 3
Query:  243 NNRPLELGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI----ASXKPSASLQSSFSRKIIDSFRSTNSSQKK-DVGMVEFIGLIE 773
            +N    LGKP SGK R++DLL Q DNR+CADCGA DPKWASANIGVFICLKCCGVHRSLGTH+SKVLSVTLD+WSD+EVD+MIE+GGN+SAN+IYEAF+P+  SKPGPD +H+ R +FIR+KYELQEFLKPSLRI     S K SA L SS SRKI+DSFR+ +SSQ     GMVEFIGL++
Sbjct:    2 SNYAAGLGKPGSGKRRIRDLLNQPDNRVCADCGASDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDEEVDSMIEIGGNASANSIYEAFLPDTCSKPGPDVNHDQRMRFIRAKYELQEFLKPSLRITSGKGSTKSSAFLTSSLSRKIMDSFRTNSSSQTMFQEGMVEFIGLLK 183          
BLAST of EY735640 vs. ExPASy Swiss-Prot
Match: AGD11_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.382e-37
Identity = 82/189 (43.39%), Postives = 116/189 (61.38%), Query Frame = 3
Query:  273 SSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPS----------LRIASXKPS--ASLQSSFSRKIIDSFRSTNSSQKKD----------VGMVEFIGLIE 773
            S  + RL+ LL Q  N+ CADCG+P+PKW S ++GVFIC+KC GVHRSLG H+SKVLSV LD+W+DD+VD ++  GGN++ N  +EA   +   KP PDS++E R+ FIR KYE  +F+ P            R  +  PS  ++   S   +I  +FR++   ++ D           GMVEF+GLI+
Sbjct:   44 SDPRDRLEKLLKQPGNKYCADCGSPEPKWVSLSLGVFICIKCSGVHRSLGVHISKVLSVKLDEWTDDQVDMLVGYGGNTAVNERFEACNIDQSKKPKPDSTNEERNDFIRKKYEQHQFMDPKDGALCTYQQPSRTNTSPPSLCSASHRSTKNRIGHAFRNSWGRRESDHKGPKKSNSMAGMVEFVGLIK 232          
BLAST of EY735640 vs. ExPASy Swiss-Prot
Match: SMAP2_MOUSE (Stromal membrane-associated protein 2 OS=Mus musculus GN=Smap2 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.073e-28
Identity = 58/119 (48.74%), Postives = 83/119 (69.75%), Query Frame = 3
Query:  291 LKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI 647
            L +LLL+ DN+ CADC +  P+WAS NIGVFIC++C G+HR+LG H+S+V SV LD W+ +++  M E+ GN  AN +YEA++PE   +P  D + E    FIR KYE ++++  SL I
Sbjct:   16 LANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM-GNGKANRLYEAYLPETFRRPQIDPAVE---GFIRDKYEKKKYMDRSLDI 130          
BLAST of EY735640 vs. ExPASy Swiss-Prot
Match: SMAP2_HUMAN (Stromal membrane-associated protein 2 OS=Homo sapiens GN=SMAP2 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.073e-28
Identity = 58/119 (48.74%), Postives = 83/119 (69.75%), Query Frame = 3
Query:  291 LKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI 647
            L +LLL+ DN+ CADC +  P+WAS NIGVFIC++C G+HR+LG H+S+V SV LD W+ +++  M E+ GN  AN +YEA++PE   +P  D + E    FIR KYE ++++  SL I
Sbjct:   16 LANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM-GNGKANRLYEAYLPETFRRPQIDPAVE---GFIRDKYEKKKYMDRSLDI 130          
BLAST of EY735640 vs. ExPASy Swiss-Prot
Match: SMAP2_BOVIN (Stromal membrane-associated protein 2 OS=Bos taurus GN=SMAP2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.073e-28
Identity = 58/119 (48.74%), Postives = 83/119 (69.75%), Query Frame = 3
Query:  291 LKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI 647
            L +LLL+ DN+ CADC +  P+WAS NIGVFIC++C G+HR+LG H+S+V SV LD W+ +++  M E+ GN  AN +YEA++PE   +P  D + E    FIR KYE ++++  SL I
Sbjct:   16 LANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM-GNGKANRLYEAYLPETFRRPQIDHAVE---GFIRDKYEKKKYMDRSLDI 130          
BLAST of EY735640 vs. ExPASy Swiss-Prot
Match: SMAP2_CHICK (Stromal membrane-associated protein 2 OS=Gallus gallus GN=SMAP2 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.058e-27
Identity = 57/119 (47.90%), Postives = 81/119 (68.07%), Query Frame = 3
Query:  291 LKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI 647
            L  LL + +N+ CADC A  P+WAS NIGVFIC++C G+HR+LG H+S+V SV LD W+ +++  M E+ GN  AN +YEAF+PE   +P  D + E    FIR KYE ++++  S+ I
Sbjct:   16 LGSLLSEEENKYCADCQAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM-GNGKANRLYEAFLPENFRRPQTDQAVE---GFIRDKYEKKKYMDRSIDI 130          
BLAST of EY735640 vs. ExPASy Swiss-Prot
Match: CEG1A_DROME (Centaurin-gamma-1A OS=Drosophila melanogaster GN=cenG1A PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 6.620e-26
Identity = 56/118 (47.46%), Postives = 81/118 (68.64%), Query Frame = 3
Query:  318 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASXKPSAS 671
            N  C DCGAP+P+WAS N+GV +C++C GVHR+LG+H+SKV S+ LDDW    +  M+ + GNS AN+++E+   + V KP   +S E + +++RSKYE +EFL P    +S  PS S
Sbjct:  714 NGFCVDCGAPNPEWASLNLGVLMCIECSGVHRNLGSHISKVRSLGLDDWPSPHLSVMLAI-GNSLANSVWESNTRQRV-KPTSQASREDKERWVRSKYEAKEFLTPLGNGSSAHPSPS 829          
BLAST of EY735640 vs. ExPASy Swiss-Prot
Match: SMAP1_HUMAN (Stromal membrane-associated protein 1 OS=Homo sapiens GN=SMAP1 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.129e-25
Identity = 62/151 (41.06%), Postives = 92/151 (60.93%), Query Frame = 3
Query:  291 LKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFL-KPSLRIASXKPS-ASLQSSFSRKIIDSFRSTNSSQKK 737
            L  LL + DN+ CADC A  P+WAS NIGVFIC++C G+HR+LG H+S+V SV LD W+ +++  M ++ GN+ A  +YEA +PE   +P  D + E    FIR KYE +++  K ++ I +   S A LQ   S   + +    N  +K+
Sbjct:   21 LSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDM-GNTKARLLYEANLPENFRRPQTDQAVEF---FIRDKYEKKKYYDKNAIAITNISSSDAPLQPLVSSPSLQAAVDKNKLEKE 167          
BLAST of EY735640 vs. ExPASy Swiss-Prot
Match: SMAP1_MOUSE (Stromal membrane-associated protein 1 OS=Mus musculus GN=Smap1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.515e-25
Identity = 53/112 (47.32%), Postives = 76/112 (67.86%), Query Frame = 3
Query:  291 LKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEF 626
            L  LL + DN+ CADC A  P+WAS NIGVFIC++C G+HR+LG H+S+V SV LD W+ +++  M ++ GN+ A  +YEA +PE   +P  D + E    FIR KYE +++
Sbjct:   21 LSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTPEQIQCMQDM-GNTKARLLYEANLPENFRRPQTDQAVEF---FIRDKYEKKKY 128          
The following BLAST results are available for this feature:
BLAST of EY735640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
AGD12_ARATH2.322e-7174.01ADP-ribosylation factor GTPase-activating protein ... [more]
AGD13_ARATH4.841e-6971.43Probable ADP-ribosylation factor GTPase-activating... [more]
AGD11_ARATH6.382e-3743.39Probable ADP-ribosylation factor GTPase-activating... [more]
SMAP2_MOUSE7.073e-2848.74Stromal membrane-associated protein 2 OS=Mus muscu... [more]
SMAP2_HUMAN7.073e-2848.74Stromal membrane-associated protein 2 OS=Homo sapi... [more]
SMAP2_BOVIN7.073e-2848.74Stromal membrane-associated protein 2 OS=Bos tauru... [more]
SMAP2_CHICK2.058e-2747.90Stromal membrane-associated protein 2 OS=Gallus ga... [more]
CEG1A_DROME6.620e-2647.46Centaurin-gamma-1A OS=Drosophila melanogaster GN=c... [more]
SMAP1_HUMAN1.129e-2541.06Stromal membrane-associated protein 1 OS=Homo sapi... [more]
SMAP1_MOUSE2.515e-2547.32Stromal membrane-associated protein 1 OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-003-B06-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735640 ID=EY735640; Name=EY735640; organism=Citrus sinensis; type=EST; length=790bp
CACGCGTCCGAAAAAACCTCTTTTCTCTCTGTTTTTTCGCTCCCAGTTGA
AGAACCACACATTTCAATTCACAGTGGAATTATTTTTCGTGATTTTCATT
TGTGGAAGAGTTACAATCACCCTTCATTTTCTTGGCAATCAAACAAATAG
TTCCCCTACTTCCTTTTTTGGGCTTCTCTGTGAATATAGTCCTTTTTGAA
TGACTGTTGCTTGCAAGTTGGGCAATGAGTATGCGTAATAATAATAACCG
TCCATTGGAACTTGGCAAACCTTCCTCGGGTAAAGGAAGGTTAAAGGATT
TATTGCTTCAACGGGATAATCGCATTTGTGCTGATTGTGGTGCTCCAGAT
CCTAAATGGGCGTCAGCAAATATCGGAGTGTTTATATGCTTAAAATGTTG
TGGCGTGCACAGAAGCCTCGGTACGCATGTCTCGAAGGTTTTGTCTGTGA
CATTGGATGACTGGTCTGATGATGAAGTTGATGCCATGATTGAAGTTGGA
GGAAATTCATCTGCTAATGCAATTTATGAGGCTTTTATACCCGAAGGTGT
TTCAAAGCCTGGACCAGATTCCAGTCATGAGATACGTTCGAAGTTTATCA
GGTCTAAGTATGAACTTCAAGAATTTTTGAAACCTAGCTTGCGGATTGCA
TCANGAAAGCCTTCTGCCTCTCTCCAATCAAGTTTTTCTCGAAAAATTAT
AGATAGCTTTCGAAGTACAAACTCATCGCAGAAAAAAGACGTAGGCATGG
TAGAGTTTATCGGGCTTATTGAAAGTCAAAGTTGGTAAAG
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