EY735637

Overview
NameEY735637
Unique NameEY735637
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY735637_ssr33 microsatellite EY735637_ssr33:33..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY735637 vs. ExPASy Swiss-Prot
Match: BH062_ARATH (Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 2.636e-12
Identity = 52/135 (38.52%), Postives = 75/135 (55.56%), Query Frame = 2
Query:  215 KEDLLMNEGVNSTPPTWSSCNFSS----------EQVITNCCLNPNWDYSMDQSDPFESALSSIVSSPAASNAPTTCSVIIPADGGGDNVMIRELIGRLGSICNSGEVLPQSYIQPQNNNHSHTCCYSTPLNSPP 589
            + +L MN GV S PP  +S + SS          + V  +   N  W+ S +QS  F+SALSS+VSSP  SN+  +   +     GG+NV++RELIG+LG+I   G++     I   N N     CY+TP++SPP
Sbjct:    2 ENELFMNAGV-SHPPVMTSPSSSSAMLKWVSMETQPVDPSLSRNLFWEKSTEQSI-FDSALSSLVSSPTPSNSNFSVGGV-----GGENVIMRELIGKLGNI---GDIYG---ITASNGN----SCYATPMSSPP 119          

HSP 2 Score: 26.5646 bits (57), Expect = 2.636e-12
Identity = 12/30 (40.00%), Postives = 15/30 (50.00%), Query Frame = 1
Query:  673 AERAGKLSCFGRISINMSAGVPL*CTSQGP 762
            AERA + SCFG  S N     P    ++ P
Sbjct:  142 AERAARFSCFGSRSFNSRTNSPFPINNEPP 171          
BLAST of EY735637 vs. ExPASy Swiss-Prot
Match: BH078_ARATH (Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.414e-12
Identity = 44/116 (37.93%), Postives = 64/116 (55.17%), Query Frame = 2
Query:  281 SSEQVITNCCLNPN--------WDYSMDQSDP---FESALSSIVSSPAASNAPTTCSVIIPADGGGDNVMIRELIGRLGSICNSGEVLPQSYIQPQNNNHSHTCCYSTPLNSPPLP 595
            SS  ++    ++PN        W+ S +Q      F+SALSS+VSSP  SN+  +        GGGD  +IRELIG+LG+I N+     + Y  P + + S   CY+TP++SPP P
Sbjct:   28 SSAMMLNWALMDPNPHQDSSFLWEKSTEQQQQQSIFDSALSSLVSSPTPSNSNFS-------GGGGDGFLIRELIGKLGNIGNNNNNSGEIYGTPMSRSAS---CYATPMSSPPPP 133          

HSP 2 Score: 24.2534 bits (51), Expect = 3.414e-12
Identity = 10/16 (62.50%), Postives = 11/16 (68.75%), Query Frame = 1
Query:  673 AERAGKLSCFGRISIN 720
            AERA + SCFG  S N
Sbjct:  158 AERAARFSCFGSRSFN 173          
The following BLAST results are available for this feature:
BLAST of EY735637 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BH062_ARATH2.636e-1238.52Transcription factor bHLH62 OS=Arabidopsis thalian... [more]
BH078_ARATH3.414e-1237.93Transcription factor bHLH78 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-003-B01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735637 ID=EY735637; Name=EY735637; organism=Citrus sinensis; type=EST; length=785bp
CACGCGTCCGCTCTTTCTTTTTCAACTTTTCTTTCTTCTTCTTCACTTAA
GAAGCATATCCCCATCATTGCCATTGCCAGTCCATTTGCTTTTTAAACTT
TGGTTCATTTCTACTTTCACTTGCTACCTTTGCTTTTCTTACATATTCTC
AAACAAACCAGGCCCCAGTAACCTGTTAAAAGACAATTGTTGATTCTTGA
TTGTTGTTATGGAGAAGGAAGATTTGCTTATGAATGAAGGTGTGAATTCA
ACACCACCCACCTGGAGCTCTTGCAATTTTAGCTCAGAACAAGTTATAAC
TAACTGTTGTTTGAATCCCAATTGGGATTATTCAATGGATCAGAGCGATC
CCTTTGAATCAGCTTTGAGCTCAATTGTTTCTTCTCCTGCAGCATCCAAT
GCCCCTACGACTTGTAGTGTTATAATTCCTGCTGATGGTGGTGGAGATAA
TGTGATGATCAGAGAATTGATTGGAAGACTTGGAAGTATTTGCAATTCTG
GTGAAGTTTTGCCTCAATCTTACATACAACCCCAGAACAATAACCACAGC
CACACTTGTTGTTACAGCACTCCATTGAATTCACCACCATTACCCAAGCT
TGATCTTTTCATGATCAGAGGAACCAATAGCAGCAACAATTGGCCAATTC
CTGCTGCTGACCCTGGGATTTGGCTGAAAGGGCTGGCAAGCTTTCTTGCT
TTGGACGAATCTCAATCAATATGAGTGCTGGTGTGCCGCTCTGATGTACA
TCCCAGGGTCCAAGGTCGCACCCCGGGACGTATAG
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