EY735614

Overview
NameEY735614
Unique NameEY735614
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:910..1386. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY735614 vs. ExPASy Swiss-Prot
Match: DXS_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 4.446e-49
Identity = 97/139 (69.78%), Postives = 110/139 (79.14%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAXDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRASCFKFPGATEL-EPFSHLITKEPT*DWEGKNPMGRHRLAILGYGAVV 414
            LA EG+KPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGA D+T+M+CLPNMVVMAPSDEAEL HMVATAA IDDR SCF++P    +  P        P    +G+  +   R+A+LGYG+ V
Sbjct:  456 LACEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELCHMVATAAAIDDRPSCFRYPRGNGIGVPLPPNYKGVPLEVGKGRVLLEGERVALLGYGSAV 594          
BLAST of EY735614 vs. ExPASy Swiss-Prot
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.868e-47
Identity = 97/142 (68.31%), Postives = 111/142 (78.17%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAXDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRASCFKFPG----ATELEPFSHLITKEPT*DWEGKNPMGRHRLAILGYGAVV 414
            LA EG+KPFCAIYSSF+QR YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGA D+TFM+CLPNMVVMAPSDEAEL H+VATAA IDDR SCF++P       EL   +  I  E     +G+  +   R+A+LGYG+ V
Sbjct:  459 LACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMACLPNMVVMAPSDEAELFHIVATAAAIDDRPSCFRYPRGNGIGVELPAGNKGIPLEV---GKGRILVEGERVALLGYGSAV 597          
BLAST of EY735614 vs. ExPASy Swiss-Prot
Match: DXS_ARATH (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=CLA1 PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 6.010e-46
Identity = 93/142 (65.49%), Postives = 109/142 (76.76%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAXDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRASCFKFPG----ATELEPFSHLITKEPT*DWEGKNPMGRHRLAILGYGAVV 414
            LA EG+KPFCAIYSSF+QR YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGA D+TFM+CLPNM+VMAPSDEA+L +MVATA  IDDR SCF++P        L P +  +   P    +G+      R+A+LGYG+ V
Sbjct:  460 LACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMACLPNMIVMAPSDEADLFNMVATAVAIDDRPSCFRYPRGNGIGVALPPGNKGV---PIEIGKGRILKEGERVALLGYGSAV 598          
BLAST of EY735614 vs. ExPASy Swiss-Prot
Match: DXS_MAGSA (1-deoxy-D-xylulose-5-phosphate synthase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=dxs PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.989e-37
Identity = 72/98 (73.47%), Postives = 83/98 (84.69%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAXDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRASCFKFP 294
            LA+EG KPFCAIYSSFLQR YDQV HDV LQKLPVRFA+DRAGLVGADG TH G+ D+ F+ CLP++V+M PSDEA+LMH VATA  IDDR S F++P
Sbjct:  388 LATEGFKPFCAIYSSFLQRAYDQVQHDVVLQKLPVRFAIDRAGLVGADGATHAGSYDMAFLGCLPDIVIMCPSDEADLMHAVATAVSIDDRPSAFRYP 485          
BLAST of EY735614 vs. ExPASy Swiss-Prot
Match: DXS_BRAJA (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium japonicum GN=dxs PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 5.999e-37
Identity = 70/98 (71.43%), Postives = 82/98 (83.67%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAXDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRASCFKFP 294
            LASEG KPFCAIYS+FLQRGYDQ+VHDV +Q LPVRFA+DRAGLVGADG TH G+ D  ++ CLPNMV+MA +DEAEL+HMVAT   IDDR S  ++P
Sbjct:  401 LASEGYKPFCAIYSTFLQRGYDQIVHDVAIQNLPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNMVIMAAADEAELVHMVATQVAIDDRPSSLRYP 498          

HSP 2 Score: 23.8682 bits (50), Expect = 5.999e-37
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 2
Query:  341 PLEIGKGRILWEG 379
            PLEIGKGR++ +G
Sbjct:  513 PLEIGKGRMIRQG 525          
BLAST of EY735614 vs. ExPASy Swiss-Prot
Match: DXS_CAUSK (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter sp. (strain K31) GN=dxs PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.002e-37
Identity = 70/98 (71.43%), Postives = 82/98 (83.67%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAXDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRASCFKFP 294
            LA++G+KPF AIYS+FLQRGYDQVVHDV +Q+LPVRFAMDRAGLVGADGPTH G  D+ FM  LP MV+MA +DE EL HMV+TA  IDDR S F++P
Sbjct:  379 LAADGMKPFVAIYSTFLQRGYDQVVHDVAIQRLPVRFAMDRAGLVGADGPTHAGTFDLGFMGALPGMVLMAAADEVELAHMVSTAVAIDDRPSAFRYP 476          

HSP 2 Score: 25.7942 bits (55), Expect = 6.002e-37
Identity = 11/13 (84.62%), Postives = 12/13 (92.31%), Query Frame = 2
Query:  341 PLEIGKGRILWEG 379
            PLEIGKGRI+ EG
Sbjct:  491 PLEIGKGRIVREG 503          
BLAST of EY735614 vs. ExPASy Swiss-Prot
Match: DXS_RHOPT (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.018e-36
Identity = 69/98 (70.41%), Postives = 82/98 (83.67%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAXDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRASCFKFP 294
            LA+EG KPFCAIYS+FLQR YDQ+VHDV +QKLPVRFA+DRAGLVGADG TH G+ D  ++ CLPNMV+MA +DEAEL+HMVAT   IDDR S  ++P
Sbjct:  382 LATEGYKPFCAIYSTFLQRAYDQIVHDVAIQKLPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNMVIMAAADEAELVHMVATQVAIDDRPSAVRYP 479          

HSP 2 Score: 24.6386 bits (52), Expect = 1.018e-36
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 2
Query:  341 PLEIGKGRILWEG 379
            PLEIGKGR++ +G
Sbjct:  494 PLEIGKGRVIRQG 506          
BLAST of EY735614 vs. ExPASy Swiss-Prot
Match: DXS_RHOPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris GN=dxs PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.018e-36
Identity = 69/98 (70.41%), Postives = 82/98 (83.67%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAXDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRASCFKFP 294
            LA+EG KPFCAIYS+FLQR YDQ+VHDV +QKLPVRFA+DRAGLVGADG TH G+ D  ++ CLPNMV+MA +DEAEL+HMVAT   IDDR S  ++P
Sbjct:  382 LATEGYKPFCAIYSTFLQRAYDQIVHDVAIQKLPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNMVIMAAADEAELVHMVATQVAIDDRPSAVRYP 479          

HSP 2 Score: 24.6386 bits (52), Expect = 1.018e-36
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 2
Query:  341 PLEIGKGRILWEG 379
            PLEIGKGR++ +G
Sbjct:  494 PLEIGKGRVIRQG 506          
BLAST of EY735614 vs. ExPASy Swiss-Prot
Match: DXS_RHOPB (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=dxs PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.327e-36
Identity = 71/98 (72.45%), Postives = 82/98 (83.67%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAXDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRASCFKFP 294
            LA+EG KPFCAIYS+FLQRGYDQVVHDV +Q LPVRFA+DRAGLVGADG TH G+ D  F+ CLPNMV+MA SDEAEL+HMVAT   I+DR S  ++P
Sbjct:  382 LAAEGYKPFCAIYSTFLQRGYDQVVHDVAIQSLPVRFAIDRAGLVGADGATHAGSFDNAFLGCLPNMVIMAASDEAELVHMVATQVAINDRPSAVRYP 479          

HSP 2 Score: 23.0978 bits (48), Expect = 1.327e-36
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 2
Query:  344 LEIGKGRILWEG 379
            LEIGKGRI+ EG
Sbjct:  495 LEIGKGRIVREG 506          
BLAST of EY735614 vs. ExPASy Swiss-Prot
Match: DXS_BRASO (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium sp. (strain ORS278) GN=dxs PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.938e-36
Identity = 70/98 (71.43%), Postives = 82/98 (83.67%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAXDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRASCFKFP 294
            LA+EG KPFCAIYS+FLQRGYDQ+VHDV +Q LPVRFA+DRAGLVGADG TH G+ D  ++ CLPNMV+MA SDEAEL+HMVAT   IDDR S  ++P
Sbjct:  382 LAAEGYKPFCAIYSTFLQRGYDQIVHDVCIQSLPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNMVIMAASDEAELVHMVATQVAIDDRPSSVRYP 479          
The following BLAST results are available for this feature:
BLAST of EY735614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_ORYSJ4.446e-4969.78Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_CAPAN1.868e-4768.31Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ARATH6.010e-4665.49Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_MAGSA2.989e-3773.471-deoxy-D-xylulose-5-phosphate synthase OS=Magneto... [more]
DXS_BRAJA5.999e-3771.431-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrh... [more]
DXS_CAUSK6.002e-3771.431-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS_RHOPT1.018e-3670.411-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHOPA1.018e-3670.411-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHOPB1.327e-3672.451-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_BRASO1.938e-3671.431-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrh... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-001-G10-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735614 ID=EY735614; Name=EY735614; organism=Citrus sinensis; type=EST; length=474bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATNTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGGCCAGCTGTTTCAAATTTCCAGGGGCA
ACGGAATTGGAGCCGTTCTCCCACCTAATAACCAAGGAACCCACTTGAGA
TTGGGAAGGGAAGAATCCTATGGGAAGGCATAGACTGGCGATTTTGGGCT
ATGGTGCTGTAGTCACACGATGGGTGCTACTGGCAAGATGGGCGAAAGGC
CAGAAATTCCGAGACACGGCGCGA
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