EY735608

Overview
NameEY735608
Unique NameEY735608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735608 vs. ExPASy Swiss-Prot
Match: C3H65_ARATH (Zinc finger CCCH domain-containing protein 65 OS=Arabidopsis thaliana GN=EMB1789 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.096e-31
Identity = 78/181 (43.09%), Postives = 99/181 (54.70%), Query Frame = 1
Query:   13 QGKMSEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFSHK-LPPKEQDPPTPSTCTPELKPSPPLYASNLLK-----------PLNNNKV----------SHQNVDALSNHGKVSSFKNIEQSVAKSI--LKPPALAPKGISYLFLGKSS 483
            +G+  EGDKCKFSHDT+P TK +  CC+FA  SCMKGD+CPFDHDLSKYPC NF+ KGFC RGD+CLFSHK  P    D P+ +      K +   ++    K           P    +V          SH N     N    SS K  E      +  L+ P++APKG+S+L L K+S
Sbjct:  361 KGRCHEGDKCKFSHDTIPETKCSP-CCYFATQSCMKGDDCPFDHDLSKYPCNNFITKGFCYRGDSCLFSHKGTPQSASDTPSANVTVSSTKITAASFSPQKTKKQSVRDAIAKLPAIQARVSSSVAFLKPSSHSN---QRNSSDASSSKINEHVTPPQVPPLRKPSVAPKGMSFLSLDKTS 537          
BLAST of EY735608 vs. ExPASy Swiss-Prot
Match: C3H7_ORYSJ (Zinc finger CCCH domain-containing protein 7 OS=Oryza sativa subsp. japonica GN=Os01g0572100 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.076e-27
Identity = 73/185 (39.46%), Postives = 100/185 (54.05%), Query Frame = 1
Query:    1 HASAQGKMSEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFSHKLPPKEQDPPTPSTCTPELKPSPPLYASNLLKPLN-NNKVSHQNVDALSNHGKVSSFKNIEQSVAKSIL-------KPPALAPKGISYLFLGKSSFLEASNLGQGISSPKK 531
            H    GK  +G+ CKFSHDT PLTKS K C H+AR SC+KGD+CP+DH+LSKYPC NF+  G C RGD C FSH +P  E         TP+ K S    AS++ +  N   + S Q    + +    +S      S+ K++        K P   P+GI +L   K+   ++S L Q + S +K
Sbjct:  436 HFYLHGKCQQGNLCKFSHDTTPLTKS-KPCTHYARGSCLKGDDCPYDHELSKYPCHNFMENGMCIRGDKCKFSHVIPTAE------GPSTPDAKKS---NASSVPEKANCQEQTSRQKTSTVYSGEPATSVPIKHHSILKNLAGISGNAQKVPVRIPRGIQFLPFNKAR-PDSSILHQDVVSTEK 609          
The following BLAST results are available for this feature:
BLAST of EY735608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
C3H65_ARATH2.096e-3143.09Zinc finger CCCH domain-containing protein 65 OS=A... [more]
C3H7_ORYSJ1.076e-2739.46Zinc finger CCCH domain-containing protein 7 OS=Or... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-001-G03-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735608 ID=EY735608; Name=EY735608; organism=Citrus sinensis; type=EST; length=865bp
CACGCGTCCGCTCAAGGGAAGATGTCAGAGGGTGACAAGTGTAAATTTTC
ACATGATACCGTACCTTTGACAAAGTCCACGAAGGCATGCTGTCATTTTG
CACGAAATTCATGCATGAAAGGAGATAACTGTCCATTTGATCATGACCTC
TCTAAATATCCCTGTGAGAATTTTGTGGCCAAAGGCTTTTGCAACAGAGG
TGATAATTGTTTGTTTTCACACAAGCTACCACCCAAGGAACAGGACCCGC
CTACTCCAAGTACTTGCACACCTGAACTGAAGCCTTCACCTCCGTTGTAT
GCTTCAAATTTGTTGAAGCCACTAAACAATAACAAAGTCTCCCATCAGAA
TGTTGATGCACTATCCAACCATGGGAAAGTTTCTTCTTTCAAAAATATAG
AACAAAGTGTGGCAAAGAGTATACTGAAGCCACCTGCACTTGCACCTAAA
GGTATTAGTTATCTCTTTCTGGGGAAGTCATCATTTCTTGAAGCCAGCAA
TCTTGGCCAAGGCATCTCATCTCCAAAGAAGAGCGACAGTAGCAAATTCG
CAAATCAGACTGCACAAATTGCATCTGATTCTGTGCAAAGTAGGGATGAA
ACTCCAAGGAGAATCCAGTGGCAACAAAGGGTGTANATTTTCTTTCTTTT
GGCAATCGTTCATTGGAGGATTCCAGTGGTAAGAAATTAGCTAACTTGTT
TTTGAATCGGGAAAATGGTGCCAAACATCNACTATCAACAATTTTGGGTT
GCATGAAAAATCTAGCTCCTCTTCCTGTGGAGAGAATGATGCCGAAGTTG
GAAAATGCACGACCCCAATATCTCAAATAGTGTTCAAAAATCAAATGATA
TGCCGAAGAAAACCC
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