EY735606

Overview
NameEY735606
Unique NameEY735606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735606 vs. ExPASy Swiss-Prot
Match: CTU2_ARATH (Cytoplasmic tRNA 2-thiolation protein 2 OS=Arabidopsis thaliana GN=CTU2 PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.342e-43
Identity = 99/205 (48.29%), Postives = 131/205 (63.90%), Query Frame = 3
Query:  102 MACNSATGCQSGCYKNEFERDLKPATETISDS-NEQNLRVKCKANEPTP---GAGEDGKHCLDCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRS*PXXXXXXXXXDETAYYPVPSSEIDNAIQEIRWMYQIYPRPQKSYMSFP*KVSFWCRSV*WKGEIQKSVDSGSDATGKEDL 704
            MACNS+ GC+SGCY  E +   K   + +S   N +++ VKCK N P     G  +DG+ C DCFR+N+FGKFRLAV S+A+ITP+DNVLVAFSGG SSRV+LQFVHELQ +A KN++AS+DRS P         DETA +P  S+E+ +AI+ +R+       P K     P +  F   S+  +  + K +DS  D TGKEDL
Sbjct:    1 MACNSS-GCESGCYDREKDNGSKIVDDAVSGGGNHESVCVKCKCNAPMTFGDGGFDDGRFCADCFRNNVFGKFRLAVTSHAMITPSDNVLVAFSGGSSSRVSLQFVHELQIKALKNYEASRDRSLPVFGVGVAFVDETAAFPALSTEMIDAIEWVRYTVSCLSPPAKDLHVVPVESIFGSDSLDARDGLLKLLDSVPDDTGKEDL 204          
BLAST of EY735606 vs. ExPASy Swiss-Prot
Match: CTU2_ORYSI (Cytoplasmic tRNA 2-thiolation protein 2 OS=Oryza sativa subsp. indica GN=CTU2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.228e-22
Identity = 63/164 (38.41%), Postives = 94/164 (57.32%), Query Frame = 3
Query:  270 CLDCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRS*PXXXXXXXXXDETAYYPVPSSEIDNAIQEIRWMYQIYPRPQKSYMSFP*KVSFWCRSV*WKGEIQKSVDSGSDATGKEDLWGR*GCCLWGSGVQKIVTE 761
            C +CFR+NL GKF+LAV SNA++ P D+VL+AFSGGP+SRVALQF+HE++ +A +++D S  ++ P         DE+     P  EI+ AI++IR +        K+      +  F   S   +  ++++VD   D TG+ED       CL    +QKI  E
Sbjct:   66 CGECFRANLLGKFKLAVTSNAMVRPTDSVLLAFSGGPASRVALQFIHEMRCKAIESWDVSNSQALPVFGVGVAFVDESVLCSKPRDEIEMAIEDIRSIVSSLSTGVKAMHIVRLEDVFSTESEDGERRLREAVDMIGDDTGREDFLR----CLRMLSLQKIAME 225          
BLAST of EY735606 vs. ExPASy Swiss-Prot
Match: CTU2_ORYSJ (Cytoplasmic tRNA 2-thiolation protein 2 OS=Oryza sativa subsp. japonica GN=CTU2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.910e-22
Identity = 63/164 (38.41%), Postives = 94/164 (57.32%), Query Frame = 3
Query:  270 CLDCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRS*PXXXXXXXXXDETAYYPVPSSEIDNAIQEIRWMYQIYPRPQKSYMSFP*KVSFWCRSV*WKGEIQKSVDSGSDATGKEDLWGR*GCCLWGSGVQKIVTE 761
            C +CFR+NL GKF+LAV SNA++ P D+VL+AFSGGP+SRVALQF+HE++ +A +++D S  ++ P         DE+     P  EI+ AI++IR +        K+      +  F   S   +  ++++VD   D TG+ED       CL    +QKI  E
Sbjct:   66 CGECFRANLLGKFKLAVTSNAMVRPTDSVLLAFSGGPASRVALQFIHEMRCKAIESWDVSNSQALPVFGVGVAFVDESVLCSKPRDEIEMAIEDIRSIVSSLSTGVKAMHIARLEDVFSTESEDGERRLREAVDMIGDDTGREDFLR----CLRMLSLQKIAME 225          
The following BLAST results are available for this feature:
BLAST of EY735606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CTU2_ARATH1.342e-4348.29Cytoplasmic tRNA 2-thiolation protein 2 OS=Arabido... [more]
CTU2_ORYSI2.228e-2238.41Cytoplasmic tRNA 2-thiolation protein 2 OS=Oryza s... [more]
CTU2_ORYSJ2.910e-2238.41Cytoplasmic tRNA 2-thiolation protein 2 OS=Oryza s... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-001-G01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735606 ID=EY735606; Name=EY735606; organism=Citrus sinensis; type=EST; length=846bp
CCACGCGTCCGGCGCTTCCTTCTGCTTCAGCTAAAACCCTGGCCTGGATT
TTAAGTTCTGAACTACGTACTTGAAAGAGCAAAACGCAAAGCATCGAAGC
TATGGCGTGCAATTCCGCGACTGGCTGCCAGTCCGGTTGTTACAAAAACG
AATTCGAACGAGATTTAAAGCCCGCAACGGAAACAATAAGCGACTCGAAT
GAGCAAAATCTGCGCGTAAAGTGCAAGGCCAACGAGCCGACGCCCGGCGC
CGGCGAAGATGGGAAGCATTGCTTGGATTGCTTTAGGAGTAATTTGTTCG
GGAAGTTTCGTCTGGCTGTTGCTTCCAACGCCTTGATCACTCCAGCTGAC
AACGTTCTCGTCGCCTTCTCCGGTGGCCCAAGTTCCCGGGTGGCTCTTCA
GTTTGTGCATGAGTTGCAGCAGAGAGCGCAGAAGAATTTTGATGCTAGTA
AAGATAGATCTTGACCTGTATTTGGTGTCGGAGTTGTGTTCGTCGATGAA
ACCGCTTATTATCCAGTTCCTTCTTCGGAGATTGACAATGCTATCCAAGA
GATTAGATGGATGTATCAAATCTATCCCCGGCCACAAAAGAGTTACATGT
CATTCCCATAGAAAGTATCCTTCTGGTGCAGATCCGTGTGATGGAAGGGA
GAGATCCAAAAATCAGTGGATTCTGGTAGTGATGCCACTGGAAAAGAAGA
TCTCTGGGGCCGCTAAGGATGTTGTCTGTGGGGAAGTGGGGTTCAGAAAA
TCGTGACAGAAGGCTGGTGAGAGGGCTGATGCCAGGGAGGGATGGGTGGC
GGGGTGGTGAGCGCGCCTGTAGAGGGGCCAGGGTGAAGCTTCACCG
back to top