EY735605

Overview
NameEY735605
Unique NameEY735605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735605 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.350e-70
Identity = 118/147 (80.27%), Postives = 132/147 (89.80%), Query Frame = 1
Query:   16 AFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKPPGV 456
            AFP TKK NND +S+ SNGGRVQCMKVWPP GLKK+ETLSYLPPLSDEAL KEI YL+R+ WIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCTD+ QV+KEVGE  KEYP++F+R+IGFDN RQVQCISF+ AKPPGV
Sbjct:   34 AFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180          
BLAST of EY735605 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 9.058e-67
Identity = 117/148 (79.05%), Postives = 129/148 (87.16%), Query Frame = 1
Query:   13 SAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKPPGV 456
            SAFP T+KTNNDITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR   IPCLEFELE G+VYREH+ SPGYYDGRYWTMWKLPM+GC D++QVLKE+ E  K YP +F+RIIGFDNKRQVQ ISF+A KPPGV
Sbjct:   35 SAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKPPGV 182          
BLAST of EY735605 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 4.496e-66
Identity = 115/147 (78.23%), Postives = 129/147 (87.76%), Query Frame = 1
Query:   13 SAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 453
            SAFP T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE+ YLLR  W+PCLEFELE G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E  K YP SF+RIIGFDN RQVQCISF+A KP G
Sbjct:   37 SAFPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of EY735605 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.970e-65
Identity = 112/146 (76.71%), Postives = 126/146 (86.30%), Query Frame = 1
Query:   13 SAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 450
            +AFP T+KTN DITSIASNGGRV CMKVWPP G KKFETLSYLP LSD  L KE+ YLLR+ WIPC+EFELE G+VYREH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E  KEYP++ +RIIGFDN RQVQCISF+A KPP
Sbjct:   31 AAFPVTRKTNTDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNALIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of EY735605 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.970e-65
Identity = 114/147 (77.55%), Postives = 128/147 (87.07%), Query Frame = 1
Query:   13 SAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 453
            SA P T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE+ YLLR  W+PCLEFELE G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E  K YP SF+RIIGFDN RQVQCISF+A KP G
Sbjct:   37 SASPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of EY735605 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.970e-65
Identity = 113/146 (77.40%), Postives = 128/146 (87.67%), Query Frame = 1
Query:   13 SAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 450
            +AFPAT+K+NNDITS+ASNGGRVQCMKVWPP GL+KFETLSYLPPLS E+L K+I YL+  GWIPCLEFELE  +VYRE++ SPGYYDGRYW MWKLPM+GCTDATQVL E+ E  K YP S +RIIGFDNKRQVQCISF+A KPP
Sbjct:   35 AAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIAYKPP 180          
BLAST of EY735605 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 6.492e-65
Identity = 112/146 (76.71%), Postives = 126/146 (86.30%), Query Frame = 1
Query:   13 SAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 450
            +AFP T+KTN DITSIASNGGRV CMKVWPP G KKFETLSYLP LSD  L KE+ YLLR+ WIPC+EFELE G+VYREH ++PGYYDGRYWTMWKLP++GCTD+ QVLKEV E  KEYP +F+RIIGFDN RQVQCISF+A KPP
Sbjct:   31 AAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of EY735605 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 6.492e-65
Identity = 110/146 (75.34%), Postives = 127/146 (86.99%), Query Frame = 1
Query:   13 SAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 450
            +AFPAT+K NNDITSI SNGGRV CM+VWPP G KKFETLSYLP L+D  L KE+ YL+R+ WIPC+EFELE G+VYREH +SPGYYDGRYWTMWKLP++GCTD+ QVLKEV E  KEYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:   31 AAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of EY735605 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.446e-64
Identity = 109/145 (75.17%), Postives = 126/145 (86.90%), Query Frame = 1
Query:   13 SAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKP 447
            + FP TKKTNNDITSIASNGGRV CM+VWPP G KKFETLSYLPPL++E L KE+ YL+R GWIPCLEFELEKG+VYRE+H SPGYYDGRYWTMW+LP++G TD++QVLKE+ +   EYP SF+RIIGFDN RQVQCISF+A  P
Sbjct:   33 AGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 177          
BLAST of EY735605 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.446e-64
Identity = 113/146 (77.40%), Postives = 125/146 (85.62%), Query Frame = 1
Query:   13 SAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 450
            + FP T+KTNNDI SIASNGGRVQCM+VWP TG KKFETLSYLP L D  L KE+ YLLR GWIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCTDA+QVLKE+ E    YP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:   32 AGFP-TRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNAFIRIIGFDNVRQVQCISFIAYKPP 176          
The following BLAST results are available for this feature:
BLAST of EY735605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
RBS_LACSA1.350e-7080.27Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE9.058e-6779.05Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY4.496e-6678.23Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_RAPSA4.970e-6576.71Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP4.970e-6577.55Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FAGCR4.970e-6577.40Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3B_ARATH6.492e-6576.71Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS1A_ARATH6.492e-6575.34Ribulose bisphosphate carboxylase small chain 1A, ... [more]
RBS_MEDSA1.446e-6475.17Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GLYTA1.446e-6477.40Ribulose bisphosphate carboxylase small chain, chl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-001-F12-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735605 ID=EY735605; Name=EY735605; organism=Citrus sinensis; type=EST; length=868bp
CCACGCGTCCGTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGACAT
TACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGC
CACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTG
TCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTG
GATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGC
ACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAAG
CTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGG
GGAGGTCCANAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTTG
ACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCACCA
GGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATATTGTT
GATTATTATTATGTGTAACCCCCATAATGATCATTCGATCAATGGGGGTT
CGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAAACTT
TTTTGGTTTGCTCCCCGACTTTGGCTTTTTTTTTTTATATATATTTTAAT
AGTTGAACAAGAGCCATGCCGCGCGGGCCAGGCGGGCCGAGGAGGGGGCA
CCGTAGCGGAGCTCGACCACGAAAAAAAACTGGGGGGGGCCTTCCAAGAA
GAAACACACGTGCTTGGGCGGCGGGTGAAGGGCGGTAGGCTTTCAATAGT
GGCGCCCCGAAAGGAGGTCCCGGCGGCTCGTTATCCACGCTGGGGCAGGG
AGAAACCTGGGCCTCCGC
back to top