EY735593

Overview
NameEY735593
Unique NameEY735593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY735593_ssr676 microsatellite EY735593_ssr676:676..685. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY735593 vs. ExPASy Swiss-Prot
Match: HMT1_ARATH (Homocysteine S-methyltransferase 1 OS=Arabidopsis thaliana GN=HMT-1 PE=1 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 5.898e-90
Identity = 156/213 (73.24%), Postives = 176/213 (82.63%), Query Frame = 2
Query:   23 ARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKXXXXXXXXXXXXXNIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNXGEVWDGRAKKWLPSKCLGDGKXESFATRWRDSGAKLIGGCCRTNTSTIQA 661
            ARD+FW+ V KV GH+YNRALVAASIGSYGAYLADGSEYSG+YG  V L+KLKDFHRRRLQVLVE+GPDLLAFETIPNK              +QIP+WICF+SVDGE APSGESF+ECL+ +NKS  + AVGINCAPPQF+ENLI  F +LTKKAIVVYPN GEVWDG+AK+WLPS+C GD + E FAT+WRD GAKLIGGCCRT  STI A
Sbjct:  106 ARDRFWEKVSKVSGHSYNRALVAASIGSYGAYLADGSEYSGHYGENVSLDKLKDFHRRRLQVLVEAGPDLLAFETIPNKLEAQACVELLEEEKVQIPAWICFTSVDGEKAPSGESFEECLEPLNKSNNIYAVGINCAPPQFIENLIRKFAKLTKKAIVVYPNSGEVWDGKAKQWLPSQCFGDDEFEMFATKWRDLGAKLIGGCCRTTPSTINA 318          
BLAST of EY735593 vs. ExPASy Swiss-Prot
Match: HMT1_MAIZE (Homocysteine S-methyltransferase 1 OS=Zea mays GN=HMT-1 PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 8.834e-78
Identity = 137/222 (61.71%), Postives = 165/222 (74.32%), Query Frame = 2
Query:   23 ARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKXXXXXXXXXXXXXNIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNXGEVWDGRAKKWLPSKCLGDGKXESFATRWRDSGAKLIGGCCRTNTSTIQAGVKVWRERS 688
            ARD+FW +  +     YNRALVAASIGSYGAYLADGSEYSG+YG  +  EKLKDFHRRRLQVL  +GPDL+AFE IPN+              +QIPSWICFSSVDG+N  SGESF +CL I+N S KV  VG+NC PPQF+E +IC F++ TKKAI VYPN GEVWDGRAK+WLP +CLG    ++ A RW+++GA LIGGCCRT  STI+A  K+ + R+
Sbjct:  100 ARDEFWKSTLRKSKPIYNRALVAASIGSYGAYLADGSEYSGSYGADITAEKLKDFHRRRLQVLASAGPDLIAFEAIPNQMEAQALVELLEEEKVQIPSWICFSSVDGKNLCSGESFADCLKILNASEKVAVVGVNCTPPQFIEGIICEFRKQTKKAIAVYPNSGEVWDGRAKRWLPVECLGHKSFDALAKRWQEAGASLIGGCCRTTPSTIRAVSKILKGRT 321          
BLAST of EY735593 vs. ExPASy Swiss-Prot
Match: HMT2_ARATH (Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana GN=HMT-2 PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.326e-57
Identity = 106/193 (54.92%), Postives = 133/193 (68.91%), Query Frame = 2
Query:   83 LVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKXXXXXXXXXXXXXNIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNXGEVWDGRAKKWLPSKCLGDGKXESFATRWRDSGAKLIGGCCRTNTSTIQA 661
            LVAAS+GSYGAYLADGSEYSG YG  + LEKLKDFHRRRLQVL ESG DL+AFETIPNK             +++IP W  F+S DG N  SG+S KEC+ I     KV AVGINC PP+F+E L+   +++T K I+VYPN GE +D   K+W+ +  +GD    S+  +W D+G  L+GGCCRT  +TI+A
Sbjct:  130 LVAASVGSYGAYLADGSEYSGIYGDSITLEKLKDFHRRRLQVLAESGADLIAFETIPNKIEAQAFADLLEEGDVKIPGWFSFNSKDGVNVVSGDSIKECISIAENCEKVVAVGINCTPPRFIEGLVLEIEKVTSKPILVYPNSGESYDADRKEWVENTGVGDEDFVSYVEKWMDAGVSLLGGCCRTTPTTIRA 322          
BLAST of EY735593 vs. ExPASy Swiss-Prot
Match: HMT3_MAIZE (Homocysteine S-methyltransferase 3 OS=Zea mays GN=HMT-3 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.466e-56
Identity = 107/193 (55.44%), Postives = 131/193 (67.88%), Query Frame = 2
Query:   83 LVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKXXXXXXXXXXXXXNIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNXGEVWDGRAKKWLPSKCLGDGKXESFATRWRDSGAKLIGGCCRTNTSTIQA 661
            LVAA++GSYGAYLADGSEYSG+YG     E LKDFHRRRLQVL E+GPDL+AFETIPNK             NI IPSW+ F+S DG +  SG+S  EC  I +K  KV AVGINC PP+F+  LI   +++T K I++YPN GE +DG  K+W+ S  + DG   S+   W   GA LIGGCCRT  +TI+A
Sbjct:  129 LVAAALGSYGAYLADGSEYSGDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEECNINIPSWLSFNSKDGVHVVSGDSLIECATIADKCAKVGAVGINCTPPRFIHGLILSIRKVTDKPILIYPNSGERYDGEKKEWVESTGVSDGDFVSYVNEWCKDGAALIGGCCRTTPNTIRA 321          
BLAST of EY735593 vs. ExPASy Swiss-Prot
Match: HMT2_MAIZE (Homocysteine S-methyltransferase 2 OS=Zea mays GN=HMT-2 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.266e-56
Identity = 107/193 (55.44%), Postives = 130/193 (67.36%), Query Frame = 2
Query:   83 LVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKXXXXXXXXXXXXXNIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNXGEVWDGRAKKWLPSKCLGDGKXESFATRWRDSGAKLIGGCCRTNTSTIQA 661
            LVAAS+GSYGAYLADGSEYSG+YG     E LKDFHRRRLQVL E+GPDL+AFETIPNK             NI IP+W  F+S DG +  SG+S  EC  I +K  KV AVGINC PP+F+  LI   +++T K I++YPN GE +DG  K+W+ S  + DG   S+   W   GA LIGGCCRT  +TI+A
Sbjct:  129 LVAASLGSYGAYLADGSEYSGDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAEAYVELLEECNINIPAWFSFNSKDGVHIVSGDSLIECTTIADKCAKVGAVGINCTPPRFIHGLILSIRKVTDKPILIYPNSGERYDGEKKEWVESTGVSDGDFVSYVNEWCKDGAVLIGGCCRTTPNTIRA 321          
BLAST of EY735593 vs. ExPASy Swiss-Prot
Match: HMT3_ARATH (Homocysteine S-methyltransferase 3 OS=Arabidopsis thaliana GN=HMT3 PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 6.160e-55
Identity = 103/197 (52.28%), Postives = 133/197 (67.51%), Query Frame = 2
Query:   83 LVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKXXXXXXXXXXXXXNIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNXGEVWDGRAKKWLPSKCLGDGKXESFATRWRDSGAKLIGGCCRTNTSTIQAGVKV 673
            LVAAS+GSYGAYLADGSEYSG YG  V  E LKDFHRRR+Q+L +SG DL+AFETIPNK             +I IP+W  F+S DG + P G+S  EC  + +    V A+GINC  P+++  LI   +++T+K IVVYPN GEV+DG  KKW+ S+   +    S+ ++WRD+GA L GGCCRT  +TI+A  KV
Sbjct:  136 LVAASVGSYGAYLADGSEYSGIYGDSVSKETLKDFHRRRVQILAKSGADLIAFETIPNKLEAEAYADLLEEEDIDIPAWFSFTSKDGVSVPRGDSVVECAKVADSCKNVVAIGINCTAPRYIHALIISLRQMTRKPIVVYPNSGEVYDGLNKKWIKSEGESEEDFVSYVSKWRDAGASLFGGCCRTTPNTIRAIAKV 332          
BLAST of EY735593 vs. ExPASy Swiss-Prot
Match: SMTA_ASTBI (Selenocysteine methyltransferase OS=Astragalus bisulcatus GN=SMTA PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.285e-52
Identity = 98/197 (49.75%), Postives = 127/197 (64.47%), Query Frame = 2
Query:   83 LVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKXXXXXXXXXXXXXNIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNXGEVWDGRAKKWLPSKCLGDGKXESFATRWRDSGAKLIGGCCRTNTSTIQAGVKV 673
            L+A S+GSYGAYLADGSE+SGNYG  +  E LKDFHRR++Q+L +SG DLLAFE +PNK             NI  P+W  F+S DG N  SG+S +EC  I     KV AVGINC PP+F+ +LI   K++T K IV+YPN GE +D   K+W  +  + D    S+  +W +SGA L+GGCCRT   TI+   K+
Sbjct:  130 LIAGSVGSYGAYLADGSEFSGNYGDAIKSETLKDFHRRKVQILADSGVDLLAFEAVPNKLEAQAYADLLEEENIITPAWFAFTSKDGNNVVSGDSIEECGSIAESCDKVVAVGINCTPPRFIHDLILLLKKVTAKPIVIYPNSGETYDAIRKEWGQNSGVTDEDFVSYVDKWCESGASLVGGCCRTTPDTIRGIYKI 326          
BLAST of EY735593 vs. ExPASy Swiss-Prot
Match: HMT4_MAIZE (Homocysteine S-methyltransferase 4 OS=Zea mays GN=HMT-4 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.397e-51
Identity = 101/202 (50.00%), Postives = 129/202 (63.86%), Query Frame = 2
Query:   80 ALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKXXXXXXXXXXXXXNIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNXGEVWDGRAKKWLPSK-CLGDGKXESFATRWRDSGAKLIGGCCRTNTSTIQAGVKVWRE 682
            ALVAAS+GSYGAY ADGSEYSG+YG  +  E LK+FHRRRLQVL  +GPDL+AFETIPNK              I+IP+W  F+S DG NA SG+   EC  + +   +V+AVG+NC  P+F+  LI   K++T K IVVYPN GE +     +W+ S    G     S    WR +GA LIGGCCRT+ +T++A  +  RE
Sbjct:  129 ALVAASVGSYGAYRADGSEYSGDYGKSMTKEDLKNFHRRRLQVLAGAGPDLIAFETIPNKLEAQVYAELLEENGIRIPAWFSFTSKDGVNAASGDPINECAAVADSCPRVDAVGVNCTAPRFIHGLILSIKKVTSKPIVVYPNSGETYVAETNEWVDSDGATGTDDFVSRVGEWRRAGAALIGGCCRTSPATVRAIARAVRE 330          
BLAST of EY735593 vs. ExPASy Swiss-Prot
Match: HMT_BACSU (Homocysteine S-methyltransferase ybgG OS=Bacillus subtilis GN=ybgG PE=4 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.904e-36
Identity = 87/215 (40.47%), Postives = 121/215 (56.28%), Query Frame = 2
Query:   23 ARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKXXXXXXXXXXXXXNIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNXGEVWDGRAKKWLPSKCLGDGKXESF---ATRWRDSGAKLIGGCCRTNTSTIQ 658
            ARD+FW   +     N  + ++AASIG YGAYLADGSEY GNY   +  ++L +FHR R++ L+E+G D+LA ETIP                 +  +WI FS+ DG +   G    +C   +++  ++ A+GINC P Q + +LI   K+ T K I+VYPN GE +D   K W  + C      ES+   A  W + GA+LIGGCCRT    IQ
Sbjct:   99 ARDEFWSLEEN--RLNRPKPIIAASIGPYGAYLADGSEYRGNYA--ISEDELIEFHRPRMKALIEAGADVLACETIPCLTEAKAIVRLLKEFP-ETYAWISFSAKDGLHISDGTPAADCASWLDEHRQIAALGINCTPLQHIPSLIEELKKNTSKPIIVYPNSGEQYDPETKTWNGAAC-----AESYGASARTWHEKGARLIGGCCRTKPENIQ 303          
BLAST of EY735593 vs. ExPASy Swiss-Prot
Match: MMUM_ECOLI (Homocysteine S-methyltransferase OS=Escherichia coli (strain K12) GN=mmuM PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 7.847e-26
Identity = 71/195 (36.41%), Postives = 104/195 (53.33%), Query Frame = 2
Query:   83 LVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKXXXXXXXXXXXXXNIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNXGEVWDGRAKKW--LPSKCLGDGKXESFATRWRDSGAKLIGGCCRTNTSTIQA 661
            LVA S+G YGAYLADGSEY G+Y   V  E  + FHR R++ L+++G DLLA ET+PN                +  +W  F+  D E+   G   ++ + ++    +V A+GINC   +     + +   LT   +VVYPN GE +D  +K W      C    +   +  +W+ +GA+LIGGCCRT  + I A
Sbjct:  117 LVAGSVGPYGAYLADGSEYRGDYHCSV--EAFQAFHRPRVEALLDAGADLLACETLPNFSEIEALAELLTAYP-RARAWFSFTLRDSEHLSDGTPLRDVVALLAGYPQVVALGINCIALENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTWHHHGEHC---AQLADYLPQWQAAGARLIGGCCRTTPADIAA 305          
The following BLAST results are available for this feature:
BLAST of EY735593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
HMT1_ARATH5.898e-9073.24Homocysteine S-methyltransferase 1 OS=Arabidopsis ... [more]
HMT1_MAIZE8.834e-7861.71Homocysteine S-methyltransferase 1 OS=Zea mays GN=... [more]
HMT2_ARATH1.326e-5754.92Homocysteine S-methyltransferase 2 OS=Arabidopsis ... [more]
HMT3_MAIZE1.466e-5655.44Homocysteine S-methyltransferase 3 OS=Zea mays GN=... [more]
HMT2_MAIZE4.266e-5655.44Homocysteine S-methyltransferase 2 OS=Zea mays GN=... [more]
HMT3_ARATH6.160e-5552.28Homocysteine S-methyltransferase 3 OS=Arabidopsis ... [more]
SMTA_ASTBI1.285e-5249.75Selenocysteine methyltransferase OS=Astragalus bis... [more]
HMT4_MAIZE5.397e-5150.00Homocysteine S-methyltransferase 4 OS=Zea mays GN=... [more]
HMT_BACSU4.904e-3640.47Homocysteine S-methyltransferase ybgG OS=Bacillus ... [more]
MMUM_ECOLI7.847e-2636.41Homocysteine S-methyltransferase OS=Escherichia co... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-001-E10-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735593 ID=EY735593; Name=EY735593; organism=Citrus sinensis; type=EST; length=874bp
CACGCGTCCGCGGACGCGTGGGGCCCGAGACAAGTTCTGGGATGCTGTAA
AGAAGGTTCCGGGGCATAACTACAACCGAGCATTGGTTGCAGCTTCAATC
GGAAGCTACGGAGCTTATCTTGCCGATGGTTCTGAGTATAGTGGAAATTA
CGGACCTGGGGTAGATCTGGAGAAGCTGAAAGATTTCCACCGGCGCAGAT
TGCAAGTCCTTGTCGAATCAGGTCCAGATTTGCTTGCTTTTGAAACCATC
CCCAATAAACTCGAGGCTCAGGCATTGGTAGAGCTGCTGGAGGAAGAGAA
CATCCAAATCCCATCTTGGATCTGCTTCAGTTCCGTAGATGGTGAGAACG
CCCCATCAGGAGAGAGCTTTAAGGAATGCCTTGATATAATAAACAAGAGC
GGCAAAGTGAATGCAGTGGGCATAAACTGTGCACCTCCCCAGTTCGTTGA
AAATCTCATCTGCTATTTCAAGGAGCTGACTAAAAAGGCTATCGTTGTTT
ATCCTAATANCGGTGAGGTATGGGATGGCCGAGCTAAGAAATGGCTGCCA
TCGAAGTGCCTTGGTGATGGCAAATNTGAGTCGTTTGCAACAAGATGGCG
TGATTCAGGAGCCAAACTCATCGGTGGTTGTTGTCGAACAAACACTTCCA
CCATTCAAGCCGGTGTCAAGGTTTGGAGAGAGAGATCATGAGGGTTTATC
GTCTCGCCGAGAAAAGTACATCCTCCATCTGCTAACCATTACCGATCGGG
TGTAGTGCTCCAATTGACTTCGGTAGCTCATATGTTGGGATTAATAAGTT
CGGCTCCTCCGGGATTGGGGCTGTTGCAAATAATGTCCCGTTTCGTCACG
GAAGAACGCCCCAAGGAGGCGGCG
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