EY735577

Overview
NameEY735577
Unique NameEY735577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5756 contig Csv1_Contig5756:14..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY735577 vs. ExPASy Swiss-Prot
Match: ARAE1_ARATH (UDP-arabinose 4-epimerase 1 OS=Arabidopsis thaliana GN=MUR4 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.070e-21
Identity = 53/95 (55.79%), Postives = 61/95 (64.21%), Query Frame = 1
Query:  538 MLNFGXXXXXXXXXXPTSFGGLDYADPXRKSNFAGKFILAAALTALCIFLLKXXXXXXXXXXXXQHEEGGTHVLVPGGAGYIGSHAALRLLKGSY 822
            M +FG            S GGLDYADP +K+N+ GK +L A+LTALCIF+LK            +HE G THVLV GGAGYIGSHAALRLLK SY
Sbjct:    1 MFSFGRARSQGRQNRSMSLGGLDYADPKKKNNYLGKILLTASLTALCIFMLKQSPTFNTPSVFSRHEPGVTHVLVTGGAGYIGSHAALRLLKESY 95          
BLAST of EY735577 vs. ExPASy Swiss-Prot
Match: ARAE3_ARATH (Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g20460 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 7.177e-18
Identity = 46/75 (61.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query:  598 GLDYADPXRKSNFAGKFILAAALTALCIFLLKXXXXXXXXXXXXQHEEGGTHVLVPGGAGYIGSHAALRLLKGSY 822
            G++Y +P RKSN  GK IL  +LTALCIF+LK            + EEG THVLV GGAGYIGSHAALRLLK SY
Sbjct:   20 GMEYLEPKRKSNVMGKIILVVSLTALCIFMLKHAPSFTSPTAFSRSEEGVTHVLVTGGAGYIGSHAALRLLKDSY 94          
BLAST of EY735577 vs. ExPASy Swiss-Prot
Match: ARAE2_ARATH (Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsis thaliana GN=At2g34850 PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 6.075e-17
Identity = 44/78 (56.41%), Postives = 51/78 (65.38%), Query Frame = 1
Query:  589 SFGGLDYADPXRKSNFAGKFILAAALTALCIFLLKXXXXXXXXXXXXQHEEGGTHVLVPGGAGYIGSHAALRLLKGSY 822
            SF GLD+ADP + +N+ GK +L   LTA+CI LL             + E G THVLV GGAGYIGSHAALRLLK SY
Sbjct:   17 SFEGLDFADPKKNNNYMGKIVLVMTLTAMCILLLNQSPTFNTPSVFSRSEPGVTHVLVTGGAGYIGSHAALRLLKDSY 94          
BLAST of EY735577 vs. ExPASy Swiss-Prot
Match: ARAE3_ORYSJ (Probable UDP-arabinose 4-epimerase 3 OS=Oryza sativa subsp. japonica GN=UEL-3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.954e-15
Identity = 42/76 (55.26%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  595 GGLDYADPXRKSNFAGKFILAAALTALCIFLLKXXXXXXXXXXXXQHEEGGTHVLVPGGAGYIGSHAALRLLKGSY 822
            GG++Y D  RK +  GK I A  LT LCIF+LK            +HE G THVLV GGAGYIGSHA+LRLLK +Y
Sbjct:   13 GGMEYFDARRKPHNVGKVIAALVLTTLCIFILKQSPGFGGSSVFSRHEPGVTHVLVTGGAGYIGSHASLRLLKDNY 88          
BLAST of EY735577 vs. ExPASy Swiss-Prot
Match: ARAE2_ORYSJ (Probable UDP-arabinose 4-epimerase 2 OS=Oryza sativa subsp. japonica GN=UEL-2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.161e-14
Identity = 39/74 (52.70%), Postives = 47/74 (63.51%), Query Frame = 1
Query:  601 LDYADPXRKSNFAGKFILAAALTALCIFLLKXXXXXXXXXXXXQHEEGGTHVLVPGGAGYIGSHAALRLLKGSY 822
            +D+ D  RK N  GKF +A ALT +CI +LK            +HE G THVLV GGAGYIGSHA LRLL+ +Y
Sbjct:    1 MDFGDSRRKPNVVGKFTVAVALTVMCIIVLKQSPGFTSTSVFSRHEIGVTHVLVTGGAGYIGSHATLRLLRDNY 74          
BLAST of EY735577 vs. ExPASy Swiss-Prot
Match: ARAE1_ORYSJ (Probable UDP-arabinose 4-epimerase 1 OS=Oryza sativa subsp. japonica GN=UEL-1 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.186e-12
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 1
Query:  601 LDYADPXRKSNFAGKFILAAALTALCIFLLKXXXXXXXXXXXXQ-HEEGGTHVLVPGGAGYIGSHAALRLLKGSY 822
            +D++DP RK  +  K ++ A LTA+C+ +L               HE G THVLV GGAGYIGSHAALRLLK S+
Sbjct:   23 MDFSDPKRKPRYLSKILMVALLTAMCVVMLTQPPCHRRTPSVFSIHEPGVTHVLVTGGAGYIGSHAALRLLKDSF 97          
BLAST of EY735577 vs. ExPASy Swiss-Prot
Match: ARAE4_ARATH (Putative UDP-arabinose 4-epimerase 4 OS=Arabidopsis thaliana GN=At5g44480 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.022e-12
Identity = 38/77 (49.35%), Postives = 46/77 (59.74%), Query Frame = 1
Query:  592 FGGLDYADPXRKSNFAGKFILAAALTALCIFLLKXXXXXXXXXXXXQHEEGGTHVLVPGGAGYIGSHAALRLLKGSY 822
            F  +D  +P  K+N  GK +L A+L  L I ++             Q EEG THVLV GGAGYIGSHAALRLL+ SY
Sbjct:   43 FVEMDCLEPKTKNNLTGKLLLVASLLILAIIVISQSSSFTSPSAFSQREEGVTHVLVTGGAGYIGSHAALRLLRDSY 119          
The following BLAST results are available for this feature:
BLAST of EY735577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ARAE1_ARATH1.070e-2155.79UDP-arabinose 4-epimerase 1 OS=Arabidopsis thalian... [more]
ARAE3_ARATH7.177e-1861.33Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsi... [more]
ARAE2_ARATH6.075e-1756.41Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsi... [more]
ARAE3_ORYSJ1.954e-1555.26Probable UDP-arabinose 4-epimerase 3 OS=Oryza sati... [more]
ARAE2_ORYSJ2.161e-1452.70Probable UDP-arabinose 4-epimerase 2 OS=Oryza sati... [more]
ARAE1_ORYSJ1.186e-1249.33Probable UDP-arabinose 4-epimerase 1 OS=Oryza sati... [more]
ARAE4_ARATH2.022e-1249.35Putative UDP-arabinose 4-epimerase 4 OS=Arabidopsi... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-001-D02-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735577 ID=EY735577; Name=EY735577; organism=Citrus sinensis; type=EST; length=823bp
CACGCGTCCGCTCTTAGGATCCAAGGTTTTCCGAGATGGGATTTTGTTGA
TCGGTGGTTTTGAATCTTAATTCCGTTGATTTGGGTTTGTTCTTTCAAAA
AAATTATTCACTTTTTAGTTTTGTTTTCGAAATATTGATTTGGGAAACGA
CCCTTTTCTTGGCTTAGTTTGTAAATCTATATTTTTTTAATTTTCTGGGC
AGACATGCTCTGACATAATTATAGTCTATGTATTTTTTAAAATTCTTGTT
CAATTTCGATCCTTTTTTTTTTCCCCTTTTTGATGTGTTCTTTTGGTTGG
TTTGTTCTCTGGATCTCGACTGTTTTTTCATCTCTGAGTATCAAAATTTT
AATCCTTTTCTTTCACATGTAAAAAATTTCATATTTTGTTAACTGAACTG
ATATTGCTTGCGGATTTACTCACAATTGCTTGCTTTTTTGTTTTGCAGCT
CACAAGGGGGTGTATTATACTTGATTTCTGACATAACTGAGGCTTACAAT
TGATTGCAACATAGATAAACAATCAGAATCTGCCGAGATGCTGAATTTTG
GCAGGGCCAGAACTCAGNCAAGGCAGACTAGACCTACGTCCTTTGGAGGT
TTGGATTATGCAGACCCCANAAGGAAGAGCAATTTTGCTGGAAAATTTAT
TTTGGCTGCTGCTCTTACTGCATTGTGCATTTTCCTGCTGAAGNCATCTC
CANCTTTCAGTAGCCCCAGCCCGTTTTCCCAACATGAAGAAGGGGGTACT
CATGTCCTGGTACCGGGTGGTGCTGGCTACATTGGGTCACATGCTGCATT
ACGATTACTGAAGGGATCATACC
back to top