EY735213

Overview
NameEY735213
Unique NameEY735213
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735213 vs. ExPASy Swiss-Prot
Match: ARFC_ARATH (Auxin response factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 1.112e-51
Identity = 121/237 (51.05%), Postives = 146/237 (61.60%), Query Frame = 2
Query:  128 ELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXXXYDIPPHLFCRVADVKLHADAASDEVYAQVSLVHD-ELIEQKVRKGKIKEDGDEESVEVAAKSSTPHMFCKTLTASDTSTCGGFSVPRRAAEDCFPPPGL---YATEAFTAACSKGSPWCGMEVQTHLKGGNPRRIS*TPWMEGVC*KKKACFWTTLVFP*GGDKGTLKNELPRTTPRKKRGATLPLFFRQQINQGN 826
            ELWHACAGPLISLPKRGS+V+YFPQGHLE   DF       Y +PPH+FCR+ DVKLHA+  +DEVYAQVSL+ + E IE+KVR+G I  DG EE  EV  +S+TPHMFCKTLTASDTST GGFSVPRRAAEDCFPP        ++   A    G  W       H+  G PRR   T        KKK      ++F   GD G L+  + R + + +  A L   + Q +N  N
Sbjct:   54 ELWHACAGPLISLPKRGSLVLYFPQGHLEQAPDFSAAI---YGLPPHVFCRILDVKLHAETTTDEVYAQVSLLPESEDIERKVREGIIDVDGGEEDYEVLKRSNTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQPRPSQELLARDLHGLEW----RFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL-RGDDGKLRLGVRRAS-QIEGTAALSAQYNQNMNHNN 281          
BLAST of EY735213 vs. ExPASy Swiss-Prot
Match: ARFD_ARATH (Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.809e-50
Identity = 80/141 (56.74%), Postives = 97/141 (68.79%), Query Frame = 2
Query:  128 ELWHACAGPLISLPKRGSVVVYFPQGHLEH---VSDFXXXXXXXYDIPPHLFCRVADVKLHADAASDEVYAQVSLVHDELIEQKVRKGK-IKE-DGDEESVEVAAKSSTPHMFCKTLTASDTSTCGGFSVPRRAAEDCFPP 535
            ELWHACAGPL  LPK+G+VVVYFPQGHLE    VS         +D+ P + CRV +V+L A+  +DEVY QV+L+  +       +GK +KE  G+EE    ++   TPHMFCKTLTASDTST GGFSVPRRAAEDCF P
Sbjct:   65 ELWHACAGPLTCLPKKGNVVVYFPQGHLEQDAMVSYSSPLEIPKFDLNPQIVCRVVNVQLLANKDTDEVYTQVTLLPLQEFSMLNGEGKEVKELGGEEERNGSSSVKRTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFAP 205          

HSP 2 Score: 74.3294 bits (181), Expect = 1.809e-50
Identity = 40/66 (60.61%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  534 PLDYMQQRPSQQLVAKDLHGVEWKFRHI*RGAIHGGFPEPLGWKAFVKKKKLVSGQPWFF--PEGG 725
            PLDY QQRPSQ+L+AKDLHGVEWKFRHI RG          GW  FV +K LVSG    F   EGG
Sbjct:  205 PLDYKQQRPSQELIAKDLHGVEWKFRHIYRGQPRRHL-LTTGWSIFVSQKNLVSGDAVLFLRDEGG 269          
BLAST of EY735213 vs. ExPASy Swiss-Prot
Match: ARFB_ORYSJ (Auxin response factor 2 OS=Oryza sativa subsp. japonica GN=ARF2 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.536e-44
Identity = 110/235 (46.81%), Postives = 135/235 (57.45%), Query Frame = 2
Query:  128 ELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXXXYDIPPHLFCRVADVKLHADAASDEVYAQVSLVHD-ELIEQKVRKGKIKEDGDEESVEVAAKSST-PHMFCKTLTASDTSTCGGFSVPRRAAEDCFPPPGLYATEAFTAACSK---GSPWCGMEVQTHLKGGNPRRIS*TPWMEGVC*KKKACFWTTLVFP*GGDKGTLKNELPRTTPRKKRGATLPLFFRQQIN 817
            ELWHACAGP+  LP++GS VVY PQGHLEH+            +PPH+FCRV DV LHADAA+DEVYAQVSLV D E +E+++R+G+     D E  +   + +  PHMFCKTLTASDTST GGFSVPRRAAEDCFPP        F    +K   G+ W       H+  G PRR   T    G   KKK      ++F  G D G L+  + R   + K  +  P    Q  N
Sbjct:   39 ELWHACAGPVAPLPRKGSAVVYLPQGHLEHLGAAPGSGPGAA-VPPHVFCRVVDVSLHADAATDEVYAQVSLVADNEEVERRMREGEDGAACDGEGEDAVKRPARIPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSLQRPFQELVAKDLHGTEW----RFRHIYRGQPRRHLLTTGWSGFINKKKLVSGDAVLFLRGED-GELRLGV-RRAAQLKNASPFPALHNQISN 266          
BLAST of EY735213 vs. ExPASy Swiss-Prot
Match: ARFO_ORYSJ (Auxin response factor 15 OS=Oryza sativa subsp. japonica GN=ARF15 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.233e-42
Identity = 115/270 (42.59%), Postives = 141/270 (52.22%), Query Frame = 2
Query:   53 IDLNKTKDDE---------NPXXXXXXXXXXXXXELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXXXYDIPPHLFCRVADVKLHADAASDEVYAQVSLVHD-ELIEQKVRKGKIKEDGDEESVEVAAKSSTPHMFCKTLTASDTSTCGGFSVPRRAAEDCFPP---PGLYATEAFTAACSKGSPWCGMEVQTHLKGGNPRRIS*TPWMEGVC*KKKACFWTTLVFP*GGDKGTLKNELPRTTPRKKRGATLPLFFRQQINQG 823
            IDLN  ++DE         N              ELWHACAGP+  LP++G VVVY PQGHLEH+ D          +PPH+FCRV DV L ADAA+DEVYAQ+SLV + E + ++   G+  EDGD      A     PHMFCKTLTASDTST GGFSVPRRAAEDCFPP        ++   A     + W       H+  G PRR   T        KKK      ++F   GD G L+  + R   + K G+  P  + Q  N G
Sbjct:    4 IDLNTVEEDEEEAAEEVAANGSSPAPARAGAVCLELWHACAGPVAPLPRKGGVVVYLPQGHLEHLGDAPAAAAAAAAVPPHVFCRVVDVTLLADAATDEVYAQLSLVPEKEEVARRADDGE-GEDGDGMKQRFA---RMPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHSTEW----RFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL-RGDDGELRLGV-RRAAQLKNGSAFPALYNQCSNLG 263          
BLAST of EY735213 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSJ (Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.870e-42
Identity = 72/141 (51.06%), Postives = 91/141 (64.54%), Query Frame = 2
Query:  128 ELWHACAGPLISLPKRGSVVVYFPQGHLEHVS-----DFXXXXXXXYDIPPHLFCRVADVKLHADAASDEVYAQVSLVHDELIEQKVRKGKIKEDGDEESVEVAAKSSTPHMFCKTLTASDTSTCGGFSVPRRAAEDCFPP 535
            ELWHACAGPL+SLP  GS VVYFPQGH E V+     +         ++PP L C++ +V +HADA +DEVYAQ++L       Q +   ++K+      +  A+K  T + FCKTLTASDTST GGFSVPRRAAE  FPP
Sbjct:   30 ELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTL-------QPLSPQELKDPFLPAELGTASKQPT-NYFCKTLTASDTSTHGGFSVPRRAAEKVFPP 162          

HSP 2 Score: 63.1586 bits (152), Expect = 5.870e-42
Identity = 32/60 (53.33%), Postives = 38/60 (63.33%), Query Frame = 3
Query:  534 PLDYMQQRPSQQLVAKDLHGVEWKFRHI*RGAIHGGFPEPLGWKAFVKKKKLVSGQPWFF 713
            PLD+ QQ P+Q+L+AKDLHG EWKFRHI RG          GW  FV  K+LV+G    F
Sbjct:  162 PLDFTQQPPAQELMAKDLHGNEWKFRHIFRGQPKRHL-LTTGWSVFVSAKRLVAGDSVLF 220          
BLAST of EY735213 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSI (Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.870e-42
Identity = 72/141 (51.06%), Postives = 91/141 (64.54%), Query Frame = 2
Query:  128 ELWHACAGPLISLPKRGSVVVYFPQGHLEHVS-----DFXXXXXXXYDIPPHLFCRVADVKLHADAASDEVYAQVSLVHDELIEQKVRKGKIKEDGDEESVEVAAKSSTPHMFCKTLTASDTSTCGGFSVPRRAAEDCFPP 535
            ELWHACAGPL+SLP  GS VVYFPQGH E V+     +         ++PP L C++ +V +HADA +DEVYAQ++L       Q +   ++K+      +  A+K  T + FCKTLTASDTST GGFSVPRRAAE  FPP
Sbjct:   30 ELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTL-------QPLSPQELKDPFLPAELGTASKQPT-NYFCKTLTASDTSTHGGFSVPRRAAEKVFPP 162          

HSP 2 Score: 63.1586 bits (152), Expect = 5.870e-42
Identity = 32/60 (53.33%), Postives = 38/60 (63.33%), Query Frame = 3
Query:  534 PLDYMQQRPSQQLVAKDLHGVEWKFRHI*RGAIHGGFPEPLGWKAFVKKKKLVSGQPWFF 713
            PLD+ QQ P+Q+L+AKDLHG EWKFRHI RG          GW  FV  K+LV+G    F
Sbjct:  162 PLDFTQQPPAQELMAKDLHGNEWKFRHIFRGQPKRHL-LTTGWSVFVSAKRLVAGDSVLF 220          
BLAST of EY735213 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSJ (Auxin response factor 17 OS=Oryza sativa subsp. japonica GN=ARF17 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.298e-41
Identity = 72/141 (51.06%), Postives = 90/141 (63.83%), Query Frame = 2
Query:  128 ELWHACAGPLISLPKRGSVVVYFPQGHLEHVS-----DFXXXXXXXYDIPPHLFCRVADVKLHADAASDEVYAQVSLVHDELIEQKVRKGKIKEDGDEESVEVAAKSSTPHMFCKTLTASDTSTCGGFSVPRRAAEDCFPP 535
            ELWHACAGPL+SLP  GS VVYFPQGH E V+     +         ++PP L C++ +V +HADA +DEVYAQ++L       Q +   ++K+      +  A K  T + FCKTLTASDTST GGFSVPRRAAE  FPP
Sbjct:   30 ELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTL-------QPLSPQELKDPYLPAELGSANKQPT-NYFCKTLTASDTSTHGGFSVPRRAAEKVFPP 162          

HSP 2 Score: 63.929 bits (154), Expect = 1.298e-41
Identity = 32/60 (53.33%), Postives = 38/60 (63.33%), Query Frame = 3
Query:  534 PLDYMQQRPSQQLVAKDLHGVEWKFRHI*RGAIHGGFPEPLGWKAFVKKKKLVSGQPWFF 713
            PLD+ QQ P+Q+L+AKDLHG EWKFRHI RG          GW  FV  K+LV+G    F
Sbjct:  162 PLDFTQQPPAQELIAKDLHGNEWKFRHIFRGQPKRHL-LTTGWSVFVSAKRLVAGDSVLF 220          
BLAST of EY735213 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSI (Auxin response factor 17 OS=Oryza sativa subsp. indica GN=ARF17 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.298e-41
Identity = 72/141 (51.06%), Postives = 90/141 (63.83%), Query Frame = 2
Query:  128 ELWHACAGPLISLPKRGSVVVYFPQGHLEHVS-----DFXXXXXXXYDIPPHLFCRVADVKLHADAASDEVYAQVSLVHDELIEQKVRKGKIKEDGDEESVEVAAKSSTPHMFCKTLTASDTSTCGGFSVPRRAAEDCFPP 535
            ELWHACAGPL+SLP  GS VVYFPQGH E V+     +         ++PP L C++ +V +HADA +DEVYAQ++L       Q +   ++K+      +  A K  T + FCKTLTASDTST GGFSVPRRAAE  FPP
Sbjct:   30 ELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTL-------QPLSPQELKDPYLPAELGSANKQPT-NYFCKTLTASDTSTHGGFSVPRRAAEKVFPP 162          

HSP 2 Score: 63.929 bits (154), Expect = 1.298e-41
Identity = 32/60 (53.33%), Postives = 38/60 (63.33%), Query Frame = 3
Query:  534 PLDYMQQRPSQQLVAKDLHGVEWKFRHI*RGAIHGGFPEPLGWKAFVKKKKLVSGQPWFF 713
            PLD+ QQ P+Q+L+AKDLHG EWKFRHI RG          GW  FV  K+LV+G    F
Sbjct:  162 PLDFTQQPPAQELIAKDLHGNEWKFRHIFRGQPKRHL-LTTGWSVFVSAKRLVAGDSVLF 220          
BLAST of EY735213 vs. ExPASy Swiss-Prot
Match: ARFH_ARATH (Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 3.112e-40
Identity = 72/142 (50.70%), Postives = 86/142 (60.56%), Query Frame = 2
Query:  128 ELWHACAGPLISLPKRGSVVVYFPQGHLEHVS-----DFXXXXXXXYDIPPHLFCRVADVKLHADAASDEVYAQVSLVHDELIEQKVRKGKIKEDGDEESVEVAAKSSTP-HMFCKTLTASDTSTCGGFSVPRRAAEDCFPP 535
            ELWHACAGPL+SLP  GS VVYFPQGH E V+     +          +PP L C++ +V +HAD  +DEVYAQ++L      EQK              +E+   S  P + FCKTLTASDTST GGFSVPRRAAE  FPP
Sbjct:   22 ELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPEEQK---------ETFVPIELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPP 154          

HSP 2 Score: 61.6178 bits (148), Expect = 3.112e-40
Identity = 31/60 (51.67%), Postives = 37/60 (61.67%), Query Frame = 3
Query:  534 PLDYMQQRPSQQLVAKDLHGVEWKFRHI*RGAIHGGFPEPLGWKAFVKKKKLVSGQPWFF 713
            PLDY  Q P+Q+L+A+DLH VEWKFRHI RG          GW  FV  K+LV+G    F
Sbjct:  154 PLDYTLQPPAQELIARDLHDVEWKFRHIFRGQPKRHL-LTTGWSVFVSAKRLVAGDSVIF 212          
BLAST of EY735213 vs. ExPASy Swiss-Prot
Match: ARFC_ORYSJ (Auxin response factor 3 OS=Oryza sativa subsp. japonica GN=ARF3 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.276e-39
Identity = 100/220 (45.45%), Postives = 126/220 (57.27%), Query Frame = 2
Query:  128 ELWHACAGPLISLPKRGSVVVYFPQGHLEHV-SDFXXXXXXXYDIPPHLFCRVADVKLHADAASDEVYAQVSL-VHDELIEQKVRKGKIKEDGDEESVEVAAKSSTPHMFCKTLTASDTSTCGGFSVPRRAAEDCFPP---PGLYATEAFTAACSKGSPWCGMEVQTHLKGGNPRRIS*TPWMEGVC*KKKACFWTTLVFP*GGDKGTLKNELPRTTPRK 772
            +LWHACAGP++SLP+RGS VVY PQGHL    +           +PPH+ CRV DV+L ADAA+DEVYA+++L    E+ E+ +  G I+ + D E  +   KS   HMFCKTLTASDTST GGFSVPRRAAEDCFPP     L  ++   A    G+ W       H+  G PRR   T        KKK      ++F   GD G L+  + R T  K
Sbjct:   82 DLWHACAGPVVSLPRRGSAVVYLPQGHLSAAGAGGGIRGEVAVALPPHVACRVVDVELCADAATDEVYARLALRAEGEVFERNLHGGGIEREDDMEDGDEERKSRMLHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDHKQLRPSQELVAKDLHGAKW----RFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL-RGDDGELRLGVRRATQLK 296          
The following BLAST results are available for this feature:
BLAST of EY735213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
ARFC_ARATH1.112e-5151.05Auxin response factor 3 OS=Arabidopsis thaliana GN... [more]
ARFD_ARATH1.809e-5056.74Auxin response factor 4 OS=Arabidopsis thaliana GN... [more]
ARFB_ORYSJ8.536e-4446.81Auxin response factor 2 OS=Oryza sativa subsp. jap... [more]
ARFO_ORYSJ1.233e-4242.59Auxin response factor 15 OS=Oryza sativa subsp. ja... [more]
ARFF_ORYSJ5.870e-4251.06Auxin response factor 6 OS=Oryza sativa subsp. jap... [more]
ARFF_ORYSI5.870e-4251.06Auxin response factor 6 OS=Oryza sativa subsp. ind... [more]
ARFQ_ORYSJ1.298e-4151.06Auxin response factor 17 OS=Oryza sativa subsp. ja... [more]
ARFQ_ORYSI1.298e-4151.06Auxin response factor 17 OS=Oryza sativa subsp. in... [more]
ARFH_ARATH3.112e-4050.70Auxin response factor 8 OS=Arabidopsis thaliana GN... [more]
ARFC_ORYSJ1.276e-3945.45Auxin response factor 3 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-110-B02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735213 ID=EY735213; Name=EY735213; organism=Citrus sinensis; type=EST; length=887bp
CCACGCGTCCGCCGTTGTATTGTCCTAAGCTCTCTCTAAAATGGTGGGTT
TGATTGATCTTAACAAAACAAAAGACGATGAGAATCCGTCGTCAGGGTCT
TTAGCTTCTGCTTCTGGGGTGTCCTCAGAGCTGTGGCACGCCTGTGCGGG
GCCACTAATATCTCTGCCCAAGAGAGGGAGTGTGGTCGTTTACTTTCCTC
AGGGACATTTGGAGCATGTCTCCGATTTTTCCGCCGCTGCTTCAGCTGCT
TATGATATTCCTCCTCATCTGTTTTGTCGTGTTGCTGATGTCAAGCTCCA
TGCAGATGCGGCAAGTGATGAGGTTTATGCCCAGGTCTCACTGGTTCATG
ATGAGCTAATTGAGCAGAAGGTGCGAAAAGGGAAAATAAAGGAGGATGGT
GATGAGGAGAGTGTTGAGGTGGCTGCTAAGTCTTCAACACCCCACATGTT
CTGCAAGACCCTCACGGCTTCTGATACTAGCACTTGTGGAGGCTTCTCTG
TACCTCGTCGAGCTGCAGAAGACTGCTTCCCTCCCCCTGGACTATATGCA
ACAGAGGCCTTCACAGCAGCTTGTAGCAAAGGATCTCCATGGTGTGGAAT
GGAAGTTCAGACACATTTAAAGGGGGGCAATCCACGGAGGATTTCCTGAA
CCCCTTGGATGGAAGGCGTTTGTTAAAAAAAAAAAGCTTGTTTCTGGACA
ACCTTGGTTTTTCCCTGAGGGGGGGACAAAGGGACATTGAAAAATGAACT
CCCGAGAACCACTCCACGTAAAAAAAGGGGGGCTACTTTACCCCTTTTTT
TTCGGCAACAAATAAATCAAGGCAATGATTAGAGGAACCACAAGCCGAGT
TTCCCCCAATAATCACTGATACGAGCGGTTTAGCCAG
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