EY735021
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY735021 vs. ExPASy Swiss-Prot
Match: SNF12_ARATH (SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana GN=At5g14170 PE=1 SV=1) HSP 1 Score: 425.246 bits (1092), Expect = 2.442e-118 Identity = 203/251 (80.88%), Postives = 227/251 (90.44%), Query Frame = 1 Query: 67 TWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLYPDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLGDVPFPIQRELSTLWGNAEKNKENDQCDEAICSAIRKIPENRKRKAFFLGVSQSPGEFI 819 TWTLKIIGRILEDGVDPDQPG VQK+NPL+PKFSSFFKRVT+SLDQRLYP+N +I+WEN+RSPAP EGFE+KRKG++EF +IRLEMNYVPEKFKLS LM+VLGIEV+TRPRIIAAIWHYVKARKLQ+PNDPS F CD LQKVFGEEK+KFTMVSQKIS HLSPP PIHLEHKIKLSGN+P +ACYDVL DVPFPIQR+L+ L NAEKNKE + CDEAIC+AIRKI E+R+R+AFFLG SQSP EFI Sbjct: 226 TWTLKIIGRILEDGVDPDQPGFVQKANPLHPKFSSFFKRVTVSLDQRLYPENPLIIWENARSPAPQEGFEIKRKGNQEFAASIRLEMNYVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSPPPPIHLEHKIKLSGNNPAVSACYDVLVDVPFPIQRDLNNLLANAEKNKEIEACDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFI 476
BLAST of EY735021 vs. ExPASy Swiss-Prot
Match: SMRD1_BOVIN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Bos taurus GN=SMARCD1 PE=2 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 7.509e-43 Identity = 93/261 (35.63%), Postives = 142/261 (54.41%), Query Frame = 1 Query: 67 TWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY-PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLGDVPFPIQRELSTLWGNAEKNKENDQCDEAICSAIRKIPENRKRKAFFLGVSQSPGEFIYPIDWVLKQ 846 +W L++ GR+LED QK KFSSFFK + I LD+ LY PDNH++ W + + +GF+VKR GD + L ++Y P +FKL P L +LGI TRP II A+W Y+K KLQ P++ CD LQ++F ++MKF+ + Q++ L PP+PI + H I + N TACYD+ +V ++ ++++ + +E D I I I + + ++ F L ++ P FI DW+ Q Sbjct: 206 SWELRVEGRLLEDSALSKYDATKQKR-----KFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDEEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFIN--DWLQSQ 459
BLAST of EY735021 vs. ExPASy Swiss-Prot
Match: SMRD1_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Mus musculus GN=Smarcd1 PE=1 SV=3) HSP 1 Score: 174.096 bits (440), Expect = 9.807e-43 Identity = 93/261 (35.63%), Postives = 142/261 (54.41%), Query Frame = 1 Query: 67 TWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY-PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLGDVPFPIQRELSTLWGNAEKNKENDQCDEAICSAIRKIPENRKRKAFFLGVSQSPGEFIYPIDWVLKQ 846 +W L++ GR+LED QK KFSSFFK + I LD+ LY PDNH++ W + + +GF+VKR GD + L ++Y P +FKL P L +LGI TRP II A+W Y+K KLQ P++ CD LQ++F ++MKF+ + Q++ L PP+PI + H I + N TACYD+ +V ++ ++++ + +E D I I I + + ++ F L ++ P FI DW+ Q Sbjct: 206 SWELRVEGRLLEDAALSKYDATKQKR-----KFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFIN--DWLQSQ 459
BLAST of EY735021 vs. ExPASy Swiss-Prot
Match: SMRD1_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Homo sapiens GN=SMARCD1 PE=1 SV=2) HSP 1 Score: 174.096 bits (440), Expect = 9.807e-43 Identity = 93/261 (35.63%), Postives = 142/261 (54.41%), Query Frame = 1 Query: 67 TWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY-PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLGDVPFPIQRELSTLWGNAEKNKENDQCDEAICSAIRKIPENRKRKAFFLGVSQSPGEFIYPIDWVLKQ 846 +W L++ GR+LED QK KFSSFFK + I LD+ LY PDNH++ W + + +GF+VKR GD + L ++Y P +FKL P L +LGI TRP II A+W Y+K KLQ P++ CD LQ++F ++MKF+ + Q++ L PP+PI + H I + N TACYD+ +V ++ ++++ + +E D I I I + + ++ F L ++ P FI DW+ Q Sbjct: 206 SWELRVEGRLLEDSALSKYDATKQKR-----KFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFIN--DWLQSQ 459
BLAST of EY735021 vs. ExPASy Swiss-Prot
Match: SMRD3_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 OS=Mus musculus GN=Smarcd3 PE=1 SV=2) HSP 1 Score: 150.214 bits (378), Expect = 1.516e-35 Identity = 80/252 (31.75%), Postives = 135/252 (53.57%), Query Frame = 1 Query: 67 TWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY-PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLGDVPFPIQRELSTLWGNAEKNKENDQCDEAICSAIRKIPENRKRKAFFLGVSQSPGEFI 819 +W L++ G++L+D P ++ KFSSFFK + I LD+ LY PDNH++ W + + +GF+VKR GD + L ++Y P +FKL P L +LG+ +R I+ A+W YVK +LQ +D D Q++F ++KF+ + Q+++ L PP PI + H I + + TACYD+ +V P++ ++S+ + +E D I I I + + ++ F L S+ P ++ Sbjct: 181 SWELRVEGKLLDD------PSKQKR------KFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYV 420
BLAST of EY735021 vs. ExPASy Swiss-Prot
Match: SMRD3_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 OS=Homo sapiens GN=SMARCD3 PE=1 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.516e-35 Identity = 80/252 (31.75%), Postives = 135/252 (53.57%), Query Frame = 1 Query: 67 TWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY-PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLGDVPFPIQRELSTLWGNAEKNKENDQCDEAICSAIRKIPENRKRKAFFLGVSQSPGEFI 819 +W L++ G++L+D P ++ KFSSFFK + I LD+ LY PDNH++ W + + +GF+VKR GD + L ++Y P +FKL P L +LG+ +R I+ A+W YVK +LQ +D D Q++F ++KF+ + Q+++ L PP PI + H I + + TACYD+ +V P++ ++S+ + +E D I I I + + ++ F L S+ P ++ Sbjct: 181 SWELRVEGKLLDD------PSKQKR------KFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYV 420
BLAST of EY735021 vs. ExPASy Swiss-Prot
Match: SMRD2_RAT (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Rattus norvegicus GN=Smarcd2 PE=2 SV=2) HSP 1 Score: 147.517 bits (371), Expect = 9.830e-35 Identity = 84/281 (29.89%), Postives = 141/281 (50.18%), Query Frame = 1 Query: 7 TVGIPGSTXXXXXXXXXXXXTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY-PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLGDVPFPIQRELSTLWGNAEKNKENDQCDEAICSAIRKIPENRKRKAFFLGVSQSPGEFIYPIDWVLKQ 846 T G PG T +W L++ G++L+D P ++ KFSSFFK + I LD+ LY PDNH++ W + +GF+VKR GD + L +++ P ++KL P L +LG+ TR I+ A+W Y+K +LQ ++ C+ +++F +++F+ + K++ L P PI + H I + N TACYD+ +V P++ ++S + +E D I I I + + ++ F L S P +FI +W+ Q Sbjct: 139 TAGTPGGTPAADKVA-----SWELRVEGKLLDD------PSKQKR------KFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQ--EWLRSQ 400
BLAST of EY735021 vs. ExPASy Swiss-Prot
Match: SMRD2_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Mus musculus GN=Smarcd2 PE=2 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 9.830e-35 Identity = 84/281 (29.89%), Postives = 141/281 (50.18%), Query Frame = 1 Query: 7 TVGIPGSTXXXXXXXXXXXXTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY-PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLGDVPFPIQRELSTLWGNAEKNKENDQCDEAICSAIRKIPENRKRKAFFLGVSQSPGEFIYPIDWVLKQ 846 T G PG T +W L++ G++L+D P ++ KFSSFFK + I LD+ LY PDNH++ W + +GF+VKR GD + L +++ P ++KL P L +LG+ TR I+ A+W Y+K +LQ ++ C+ +++F +++F+ + K++ L P PI + H I + N TACYD+ +V P++ ++S + +E D I I I + + ++ F L S P +FI +W+ Q Sbjct: 139 TAGTPGGTPAADKVA-----SWELRVEGKLLDD------PSKQKR------KFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQ--EWLRSQ 400
BLAST of EY735021 vs. ExPASy Swiss-Prot
Match: SNF12_DICDI (SWI/SNF complex component SNF12 homolog OS=Dictyostelium discoideum GN=snf12-1 PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 1.087e-33 Identity = 81/268 (30.22%), Postives = 146/268 (54.48%), Query Frame = 1 Query: 67 TWTLKIIGRILEDGVDPDQPGMVQKSNPLYP-----KFSSFFKRVTISLDQRLYPDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLGDVPFPIQRELSTLWGNAEKNKENDQCDEAICSAIRKIPENRKRKAFFLGVSQSPGEFIYPIDWVLKQEFE 855 +W+L++ G++L++ D ++ S+ KFSSFFK+V I + R W+ S++ +GFE+KR G++E + I + +++VP+K+K+ L ++L I DT+PRII A+WHY+K+ L I TCD L+ +F E+++F + Q + +HLSPP P+ ++ + LSG++ YD+ +V PI N KE Q ++ I I+K+ ++++++ F +S P F+ L ++F+ Sbjct: 146 SWSLRVEGKLLDESQDELVNKSIKSSSSSSSTANKRKFSSFFKKVFIQIGHR-----DTCEWDKSQTFTETDGFEIKRNGNQEVDIKILMYLDHVPQKYKVLGGLSQLLNIHTDTKPRIILALWHYIKSNTLLDAETKKI-TCDENLKNIFSLEELQFNQIPQLLREHLSPPDPLEFQYTLHLSGDAKDYEQAYDIQVEVDEPIFNP------NPTMRKEISQLNDEINHHIQKVYQHKRKREFMEKLSSDPLGFLNDTTANLVKDFQ 401
BLAST of EY735021 vs. ExPASy Swiss-Prot
Match: SMRD2_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Homo sapiens GN=SMARCD2 PE=1 SV=2) HSP 1 Score: 142.895 bits (359), Expect = 2.421e-33 Identity = 83/281 (29.54%), Postives = 140/281 (49.82%), Query Frame = 1 Query: 7 TVGIPGSTXXXXXXXXXXXXTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY-PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLGDVPFPIQRELSTLWGNAEKNKENDQCDEAICSAIRKIPENRKRKAFFLGVSQSPGEFIYPIDWVLKQ 846 T G PG T +W L++ G++L+D P ++ KFSSFFK + I LD+ LY PD H++ W + +GF+VKR GD + L +++ P ++KL P L +LG+ TR I+ A+W Y+K +LQ ++ C+ +++F +++F+ + K++ L P PI + H I + N TACYD+ +V P++ ++S + +E D I I I + + ++ F L S P +FI +W+ Q Sbjct: 139 TAGTPGGTPAGDKVA-----SWELRVEGKLLDD------PSKQKR------KFSSFFKSLVIELDKELYGPDGHLVEWYWMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQ--EWLRSQ 400 The following BLAST results are available for this feature:
BLAST of EY735021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY735021 ID=EY735021; Name=EY735021; organism=Citrus sinensis; type=EST; length=908bpback to top |