EY734435

Overview
NameEY734435
Unique NameEY734435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY734435 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.538e-23
Identity = 49/68 (72.06%), Postives = 57/68 (83.82%), Query Frame = 3
Query:  690 GYKNIMENCMGNARALREGLEKTGRF*ILSKDVGVPLIAFSLKDSSAHTVVEISEGLRKFGWIIPAYT 893
            GYKN+MENC  NA  LREGLEKTGRF I+SK++GVPL+AFSLKD+  H   EISE LR+FGWI+PAYT
Sbjct:  339 GYKNVMENCQENASVLREGLEKTGRFNIISKEIGVPLVAFSLKDNRQHNEFEISETLRRFGWIVPAYT 406          
BLAST of EY734435 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.534e-22
Identity = 46/68 (67.65%), Postives = 59/68 (86.76%), Query Frame = 3
Query:  690 GYKNIMENCMGNARALREGLEKTGRF*ILSKDVGVPLIAFSLKDSSAHTVVEISEGLRKFGWIIPAYT 893
            GYKN+M+NC+ NA+ L EG+ K GRF I+SKDVGVP++AFSL+DSS +TV E+SE LR+FGWI+PAYT
Sbjct:  340 GYKNVMKNCLSNAKVLTEGITKMGRFDIVSKDVGVPVVAFSLRDSSKYTVFEVSEHLRRFGWIVPAYT 407          
BLAST of EY734435 vs. ExPASy Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.587e-21
Identity = 48/68 (70.59%), Postives = 56/68 (82.35%), Query Frame = 3
Query:  690 GYKNIMENCMGNARALREGLEKTGRF*ILSKDVGVPLIAFSLKDSSAHTVVEISEGLRKFGWIIPAYT 893
            GY+N+MENC  N   LREGLEKT RF I+SKD GVPL+AFSLKDSS HT  EIS+ LR++GWI+PAYT
Sbjct:  339 GYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYT 406          
BLAST of EY734435 vs. ExPASy Swiss-Prot
Match: DCE2_ARATH (Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.966e-20
Identity = 46/68 (67.65%), Postives = 55/68 (80.88%), Query Frame = 3
Query:  690 GYKNIMENCMGNARALREGLEKTGRF*ILSKDVGVPLIAFSLKDSSAHTVVEISEGLRKFGWIIPAYT 893
            GYKN+MENC+ N   L+EG+EKT RF I+SKD GVP++AFSLKD S H   EISE LR+FGWI+PAYT
Sbjct:  338 GYKNVMENCIENMVVLKEGIEKTERFNIVSKDQGVPVVAFSLKDHSFHNEFEISEMLRRFGWIVPAYT 405          
The following BLAST results are available for this feature:
BLAST of EY734435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DCE_PETHY8.538e-2372.06Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
DCE_SOLLC5.534e-2267.65Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
DCE1_ARATH3.587e-2170.59Glutamate decarboxylase 1 OS=Arabidopsis thaliana ... [more]
DCE2_ARATH3.966e-2067.65Glutamate decarboxylase 2 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-088-E12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY734435 ID=EY734435; Name=EY734435; organism=Citrus sinensis; type=EST; length=903bp
CCACGCGTCCGAAACTATTCTGTACTACCTTCTAGAGGTCTTACTGTTTT
TCGTTTGAGCTAAGACACACCAATGGGCCTATATCGTTTTACAAGAGCAT
CTGTCAAGTAATCTGTTACAAGAACATTGTGTTGTTCCATTGAATGGAAG
ATGACTTGTAAATTTGATATTTTTGCGACCATTGTAGTTGTATTTTTGTA
ATTGACAATCATTCCTATTTGGCAGGCTCCAGTCAAATAATTGCTCAATA
TTATCAGTTTATACGGCTTGGCTTTGAGGTAATTCCATCTTTTTGTTGTG
TTGATCATAAAAAACTCTCAAGTTTCTTTGTGATACATTCCTCCTACTTT
TATGACACTTTGCATGTACTATGAAATCCTGTTAATTTGTAAGTGTTCAT
ATGGCATATTGTTAAAGTTCATCAGTTAAAGTTAGTTTGTTACCGGTAGA
CATTGACAAAATGAGGTTGAGAACTGATGCACCAAAATCGATCAGTTGTG
ATGGGATCAATTTTCTTGTTGTCTCATGTTTTTTGGATATTAAACTGACT
AGTGTTTGCTAGATTTGAAATGATTCTGACTGCTCATATATTCAATAAAA
TGTACAATTTGGCCTGTATTTGTCCAGGAAATTACCTTTACTTTTATTTC
AAGTCTCAAGGTATGTCCTTTTCTTGTCCTGTAAACTAGGGTTACAAGAA
CATTATGGAAAATTGCATGGGGAATGCTAGAGCGCTAAGAGAAGGATTAG
AGAAAACAGGGCGCTTTTGAATTCTCTCCAAGGATGTTGGCGTACCCTTA
ATAGCCTTTTCTTTGAAGGACAGCAGCGCACACACCGTGGTTGAGATATC
CGAGGGTTTGAGAAAGTTTGGGTGGATAATTCCGGCCTATACATGCCTGC
TAA
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