EY756585

Overview
NameEY756585
Unique NameEY756585
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length361
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756585 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.319e-31
Identity = 65/70 (92.86%), Postives = 65/70 (92.86%), Query Frame = 3
Query:    9 PWVCVHDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 218
            P     DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  198 PLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
BLAST of EY756585 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.319e-31
Identity = 65/70 (92.86%), Postives = 65/70 (92.86%), Query Frame = 3
Query:    9 PWVCVHDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 218
            P     DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  198 PLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
BLAST of EY756585 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.319e-31
Identity = 65/70 (92.86%), Postives = 65/70 (92.86%), Query Frame = 3
Query:    9 PWVCVHDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 218
            P     DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  196 PLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of EY756585 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 1.722e-31
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 3
Query:   27 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 218
            DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  198 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261          
BLAST of EY756585 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 1.722e-31
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 3
Query:   27 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 218
            DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  202 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of EY756585 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.249e-31
Identity = 64/70 (91.43%), Postives = 65/70 (92.86%), Query Frame = 3
Query:    9 PWVCVHDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 218
            P     DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  205 PLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274          
BLAST of EY756585 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.249e-31
Identity = 64/70 (91.43%), Postives = 65/70 (92.86%), Query Frame = 3
Query:    9 PWVCVHDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 218
            P     DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA+PVNNNAWAYATNFVPGK
Sbjct:  176 PLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245          
BLAST of EY756585 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.249e-31
Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = 3
Query:    9 PWVCVHDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 218
            P   + DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   55 PLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124          
BLAST of EY756585 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.937e-31
Identity = 64/70 (91.43%), Postives = 65/70 (92.86%), Query Frame = 3
Query:    9 PWVCVHDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 218
            P     DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:   47 PLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116          
BLAST of EY756585 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.937e-31
Identity = 64/70 (91.43%), Postives = 65/70 (92.86%), Query Frame = 3
Query:    9 PWVCVHDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 218
            P     DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  198 PLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          
The following BLAST results are available for this feature:
BLAST of EY756585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB24_TOBAC1.319e-3192.86Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_NICPL1.319e-3192.86Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_TOBAC1.319e-3192.86Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_ORYSJ1.722e-31100.00Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ORYSJ1.722e-31100.00Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2B_PINSY2.249e-3191.43Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB21_SOYBN2.249e-3191.43Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_RAPSA2.249e-3191.43Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB2D_SOLLC2.937e-3191.43Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB23_PETSP2.937e-3191.43Chlorophyll a-b binding protein 22R, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-C07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756585 ID=EY756585; Name=EY756585; organism=Citrus sinensis; type=EST; length=361bp
CCACGCGTCCGTGGGTTTGTGTTCATGACCCGGAGGCTTTTGCTGAGCTC
AAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGG
TTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGG
CCGACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACC
AACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTT
CGGTTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAA
TTTGAGTTGTGATTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAG
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