EY756418

Overview
NameEY756418
Unique NameEY756418
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756418 vs. ExPASy Swiss-Prot
Match: TRXM3_ARATH (Thioredoxin M-type 3, chloroplastic OS=Arabidopsis thaliana GN=At2g15570 PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 1.231e-45
Identity = 95/163 (58.28%), Postives = 114/163 (69.94%), Query Frame = 2
Query:  236 CFTSAHFAIPRVSSFPSPTPNKLSFSSH---FYAKNATFKAPNRSLSLKILCVRESRAV-VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPXGVYIAAIERGLKS 712
            CF    F   R  S PS      SFS     F  + +   +    L L  LCVR+SRA  VT+ SWE S+L S+TPVLVEFY SWCGPCRMVHR+IDEIAG+YAG+L C+++N D DL +AE+YEIKAVPVVLLFKNGEKRE+++GTMP   YI+AIER L S
Sbjct:   11 CFNPTRFHTARHISSPSRLFPVTSFSPRSLRFSDRRSLLSSSASRLRLSPLCVRDSRAAEVTQRSWEDSVLKSETPVLVEFYTSWCGPCRMVHRIIDEIAGDYAGKLNCYLLNADNDLPVAEEYEIKAVPVVLLFKNGEKRESIMGTMPKEFYISAIERVLNS 173          
BLAST of EY756418 vs. ExPASy Swiss-Prot
Match: TRXM_ORYSJ (Thioredoxin M-type, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.848e-25
Identity = 50/104 (48.08%), Postives = 73/104 (70.19%), Query Frame = 2
Query:  401 VVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPXGVYIAAIERGLKS 712
            V  + +W+  +L S+ PVLVEF+A WCGPCRM+  VIDE+A EY G+++C  VNTD    IA +Y I+++P VL+FKNGEK+E+V+G +P       I++ + S
Sbjct:   69 VADEKNWDSMVLGSEAPVLVEFWAPWCGPCRMIAPVIDELAKEYVGKIKCCKVNTDDSPNIATNYGIRSIPTVLMFKNGEKKESVIGAVPKTTLATIIDKYVSS 172          
BLAST of EY756418 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.117e-25
Identity = 46/100 (46.00%), Postives = 72/100 (72.00%), Query Frame = 2
Query:  401 VVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPXGVYIAAIER 700
            VV   SW++ ++ S+TPVLV+F+A WCGPCRM+  +IDE+A EYAG+++C+ +NTD     A  Y I+++P VL FKNGE++++V+G +P       +E+
Sbjct:   71 VVNDSSWDELVIGSETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEK 170          
BLAST of EY756418 vs. ExPASy Swiss-Prot
Match: TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 3.485e-24
Identity = 49/120 (40.83%), Postives = 77/120 (64.17%), Query Frame = 2
Query:  347 APNRSLSLKILCVRESRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPXGVYIAAIERGL 706
            AP RS+      VR     V  D+++  +L S  PVLV+F+A WCGPCR++  V+DEIAGEY  +L+C  +NTD    +A +Y I+++P +++FK G+K ET++G +P    +  +E+ L
Sbjct:   25 APRRSV-----VVRAEAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 139          
BLAST of EY756418 vs. ExPASy Swiss-Prot
Match: TRXM_MAIZE (Thioredoxin M-type, chloroplastic OS=Zea mays GN=TRM1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.324e-23
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 2
Query:  401 VVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPXGVYIAAIERGLKS 712
            V  + +W+  ++  +TPVLVEF+A WCGPCRM+  VIDE+A +YAG++ C  VNTD    +A  Y I+++P VL+FK GEK+E+V+G +P       I++ + S
Sbjct:   63 VADEKNWDGLVMACETPVLVEFWAPWCGPCRMIAPVIDELAKDYAGKITCCKVNTDDSPNVASTYGIRSIPTVLIFKGGEKKESVIGAVPKSTLTTLIDKYIGS 166          
BLAST of EY756418 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.854e-23
Identity = 53/145 (36.55%), Postives = 88/145 (60.69%), Query Frame = 2
Query:  287 PTPNKLSFSSHFYAKNATFKAPNRSLSLKILCVRESRAV-----VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPXGVYIAAIERGL 706
            PT   L  S    + + +  +P +     ++C + S AV     V   SW++ +L S+ PV+V+F+A WCGPC+++  VIDE+A EY+G++  + +NTD    IA  Y I+++P VL FKNGE++E+++G +P      +IE+ L
Sbjct:   36 PTFRGLKRSFPALSSSVSSSSPRQFRYSSVVC-KASEAVKEVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 179          
BLAST of EY756418 vs. ExPASy Swiss-Prot
Match: TRXM_WHEAT (Thioredoxin M-type, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.033e-23
Identity = 46/104 (44.23%), Postives = 72/104 (69.23%), Query Frame = 2
Query:  401 VVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPXGVYIAAIERGLKS 712
            V  + +W+  ++  ++PVLVEF+A WCGPCRM+  VIDE+A +Y G+++C  VNTD    IA  Y I+++P VL+FK+GEK+E+V+G +P       I++ + S
Sbjct:   72 VADEKNWDNMVIACESPVLVEFWAPWCGPCRMIAPVIDELAKDYVGKIKCCKVNTDDCPNIASTYGIRSIPTVLMFKDGEKKESVIGAVPKTTLCTIIDKYIGS 175          
BLAST of EY756418 vs. ExPASy Swiss-Prot
Match: TRXM4_ARATH (Thioredoxin M-type 4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 5.033e-23
Identity = 43/101 (42.57%), Postives = 69/101 (68.32%), Query Frame = 2
Query:  404 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPXGVYIAAIERGL 706
            ++   W+  +L SD PVLVEF+A WCGPCRM+H ++D++A ++AG+ + + +NTD     A  Y I++VP V++FK GEK+++++G +P       IER L
Sbjct:   91 LSDSEWQTKVLESDVPVLVEFWAPWCGPCRMIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKDSIIGAVPRETLEKTIERFL 191          
BLAST of EY756418 vs. ExPASy Swiss-Prot
Match: THIO_GRIPA (Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.114e-21
Identity = 47/103 (45.63%), Postives = 71/103 (68.93%), Query Frame = 2
Query:  404 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPXGVYIAAIERGLKS 712
            V   S+ + ++NS  PVLV+F+A WCGPCRM+   IDEIA +Y  +L+   VNTD + TIA +Y I+++P V++F NG+K +TVVG +P    +  +++ LKS
Sbjct:    6 VIDTSFHEEVINSRQPVLVDFWAPWCGPCRMIASTIDEIAHDYKDKLKVVKVNTDQNPTIATEYGIRSIPTVMIFINGKKVDTVVGAVPKLTLLNTLQKHLKS 108          
BLAST of EY756418 vs. ExPASy Swiss-Prot
Match: THIO1_ANASP (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=trxA PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.114e-21
Identity = 45/103 (43.69%), Postives = 71/103 (68.93%), Query Frame = 2
Query:  398 AVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPXGVYIAAIERGL 706
            A VT  ++++ +L+SD PVLV+F+A WCGPCRMV  V+DEIA +Y G+++   VNTD +  +A  Y I+++P +++FK G+K + VVG +P       +E+ L
Sbjct:    5 AQVTDSTFKQEVLDSDVPVLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107          
The following BLAST results are available for this feature:
BLAST of EY756418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
TRXM3_ARATH1.231e-4558.28Thioredoxin M-type 3, chloroplastic OS=Arabidopsis... [more]
TRXM_ORYSJ1.848e-2548.08Thioredoxin M-type, chloroplastic OS=Oryza sativa ... [more]
TRXM_PEA4.117e-2546.00Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
TRXM_CHLRE3.485e-2440.83Thioredoxin M-type, chloroplastic OS=Chlamydomonas... [more]
TRXM_MAIZE1.324e-2345.19Thioredoxin M-type, chloroplastic OS=Zea mays GN=T... [more]
TRXM_SPIOL3.854e-2336.55Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
TRXM_WHEAT5.033e-2344.23Thioredoxin M-type, chloroplastic OS=Triticum aest... [more]
TRXM4_ARATH5.033e-2342.57Thioredoxin M-type 4, chloroplastic OS=Arabidopsis... [more]
THIO_GRIPA2.114e-2145.63Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 S... [more]
THIO1_ANASP2.114e-2143.69Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-D05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756418 ID=EY756418; Name=EY756418; organism=Citrus sinensis; type=EST; length=906bp
CCACGCGTCCGGTTTTCATTACGCTTTGCTGTTGAGGGGTCGCAGGTGCT
GGCCTGGTGCAGTATCAGCATTACAATTTGCAATAAAGAAATTAAGAAAA
TAAAGGGCTGACAATTTCACTCTTCCACTTCTCCCACCTAACCAATAAAA
ACACACACGCACACTTATTCTCTGATCAAACAAACACTCTTCTTCAGTTA
TGGCTTCTGTTTCTTCTTCATCGTCATCATCTTCGTGTTTCACTTCTGCC
CATTTTGCCATTCCACGCGTCTCTTCATTTCCTTCTCCTACGCCCAACAA
ACTCTCATTTTCCTCTCATTTTTACGCCAAAAACGCTACCTTTAAGGCTC
CAAACAGGTCTCTTTCACTTAAGATTCTCTGTGTACGTGAATCTAGAGCA
GTGGTCACCAAAGACTCGTGGGAAAAGTCGATCCTGAACAGTGATACCCC
TGTTCTCGTTGAATTTTATGCGAGTTGGTGTGGACCGTGCAGGATGGTTC
ATCGGGTGATTGATGAGATTGCAGGAGAGTATGCTGGGAGACTTAGATGT
TTTATGGTCAATACGGACACAGACCTAACAATTGCTGAGGACTATGAAAT
TAAGGCTGTGCCTGTAGTTTTGCTCTTCAAGAACGGAGAGAAACGCGAAA
CTGTGGTTGGAACCATGCCGAANGGAGTCTACATTGCTGCTATTGAGAGG
GGTCTGAAGTCATAAACATGATCTAATGGCTTGAAGATCCATTGAGTCGA
TCAATTCGTTTTAGGTGTCAATGACCAGTATGGCTGAATTTTCATTGGGG
CATGATTACTTTAGATTACATCATCTAGATATTGCTTCCCAGGTACCACC
ACACTGGGGGCTGAACTGTTAGGGGTTTACCTGGCCTTGGTTTTGCTAGG
TGGCCA
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