EY756323

Overview
NameEY756323
Unique NameEY756323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8503 contig Csv1_Contig8503:54..517. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756323 vs. ExPASy Swiss-Prot
Match: RS29_ARATH (40S ribosomal protein S29 OS=Arabidopsis thaliana GN=RPS29A PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 7.284e-22
Identity = 44/56 (78.57%), Postives = 47/56 (83.93%), Query Frame = 1
Query:   64 MGHSNVWNSHPKTYGPGSPACRVCGNPHAIIIKYGLMCCRQCFRSYA*EIGFLEYR 231
            MGHSNVWNSHPK YGPGS  CRVCGN H +I KYGL CCRQCFRS A EIGF++YR
Sbjct:    1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 56          
BLAST of EY756323 vs. ExPASy Swiss-Prot
Match: RS29_WHEAT (40S ribosomal protein S29 OS=Triticum aestivum GN=RPS29 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.623e-21
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 1
Query:   64 MGHSNVWNSHPKTYGPGSPACRVCGNPHAIIIKYGLMCCRQCFRSYA*EIGFLEYR 231
            MGHSNVWNSHPK YG GS  CRVCGN H +I KYGLMCCRQCFRS A +IGF++YR
Sbjct:    1 MGHSNVWNSHPKNYGAGSRVCRVCGNSHGLIRKYGLMCCRQCFRSDAKDIGFIKYR 56          
BLAST of EY756323 vs. ExPASy Swiss-Prot
Match: RS29_GRIJA (40S ribosomal protein S29 OS=Griffithsia japonica GN=RPS29 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.402e-17
Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 1
Query:   64 MGHSNVWNSHPKTYGPGSPACRVCGNPHAIIIKYGLMCCRQCFRSYA*EIGFLEYR 231
            MGH N+W SHP+ YG GS +C++CGN H +I KY +  CRQCFR YA +IGF++YR
Sbjct:    1 MGHQNIWYSHPRKYGKGSRSCKICGNKHGLIRKYSMNICRQCFREYAKDIGFIKYR 56          
BLAST of EY756323 vs. ExPASy Swiss-Prot
Match: RS29_IXOSC (40S ribosomal protein S29 OS=Ixodes scapularis GN=RpS29 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.972e-16
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 1
Query:   64 MGHSNVWNSHPKTYGPGSPACRVCGNPHAIIIKYGLMCCRQCFRSYA*EIGF 219
            MGH N+W SHP+ YGPGS  CRVC N H +I KYGL  CR+CFR YA +IGF
Sbjct:    1 MGHENIWYSHPRKYGPGSRYCRVCANHHGLIRKYGLNICRRCFRQYAADIGF 52          
BLAST of EY756323 vs. ExPASy Swiss-Prot
Match: RS29_SPOFR (40S ribosomal protein S29 OS=Spodoptera frugiperda GN=RpS29 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.738e-15
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1
Query:   64 MGHSNVWNSHPKTYGPGSPACRVCGNPHAIIIKYGLMCCRQCFRSYA*EIGF 219
            MGH+N+W SHP+ YG GS +CR C N H +I KYGL  CRQCFR YA +IGF
Sbjct:    1 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGF 52          
BLAST of EY756323 vs. ExPASy Swiss-Prot
Match: RS29_PLUXY (40S ribosomal protein S29 OS=Plutella xylostella GN=RpS29 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.738e-15
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1
Query:   64 MGHSNVWNSHPKTYGPGSPACRVCGNPHAIIIKYGLMCCRQCFRSYA*EIGF 219
            MGH+N+W SHP+ YG GS +CR C N H +I KYGL  CRQCFR YA +IGF
Sbjct:    1 MGHANIWYSHPRKYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYANDIGF 52          
BLAST of EY756323 vs. ExPASy Swiss-Prot
Match: RS29_SCALT (40S ribosomal protein S29 OS=Scarabaeus laticollis GN=RpS29 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.269e-15
Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 1
Query:   64 MGHSNVWNSHPKTYGPGSPACRVCGNPHAIIIKYGLMCCRQCFRSYA*EIGF 219
            MGH N+W SHP+ YG GS +CR C N H +I KYGL  CRQCFR YA +IGF
Sbjct:    1 MGHQNIWYSHPRKYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYANDIGF 52          
BLAST of EY756323 vs. ExPASy Swiss-Prot
Match: RS29_BOMMO (40S ribosomal protein S29 OS=Bombyx mori GN=RpS29 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.964e-15
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1
Query:   64 MGHSNVWNSHPKTYGPGSPACRVCGNPHAIIIKYGLMCCRQCFRSYA*EIGF 219
            MGH+N+W SHP+ YG GS +CR C N H +I KYGL  CRQCFR YA +IGF
Sbjct:    1 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGF 52          
BLAST of EY756323 vs. ExPASy Swiss-Prot
Match: RS29_LONON (40S ribosomal protein S29 OS=Lonomia obliqua GN=RpS29 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.921e-14
Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = 1
Query:   64 MGHSNVWNSHPKTYGPGSPACRVCGNPHAIIIKYGLMCCRQCFRSYA*EIGF 219
            MGH+N+W SHP+ Y  GS +CR C N H +I KYGL  CRQCFR YA +IGF
Sbjct:    1 MGHANIWYSHPRRYCQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGF 52          
BLAST of EY756323 vs. ExPASy Swiss-Prot
Match: RS29_LYSTE (40S ribosomal protein S29 OS=Lysiphlebus testaceipes GN=RpS29 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.509e-14
Identity = 33/52 (63.46%), Postives = 37/52 (71.15%), Query Frame = 1
Query:   64 MGHSNVWNSHPKTYGPGSPACRVCGNPHAIIIKYGLMCCRQCFRSYA*EIGF 219
            MG  N+W SHP+ YG GS +CR C N H II KYGL  CRQCFR YA +IGF
Sbjct:    1 MGFENIWFSHPRKYGQGSRSCRSCANKHGIIRKYGLNICRQCFREYASDIGF 52          
The following BLAST results are available for this feature:
BLAST of EY756323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS29_ARATH7.284e-2278.5740S ribosomal protein S29 OS=Arabidopsis thaliana ... [more]
RS29_WHEAT1.623e-2176.7940S ribosomal protein S29 OS=Triticum aestivum GN=... [more]
RS29_GRIJA5.402e-1758.9340S ribosomal protein S29 OS=Griffithsia japonica ... [more]
RS29_IXOSC5.972e-1665.3840S ribosomal protein S29 OS=Ixodes scapularis GN=... [more]
RS29_SPOFR1.738e-1563.4640S ribosomal protein S29 OS=Spodoptera frugiperda... [more]
RS29_PLUXY1.738e-1563.4640S ribosomal protein S29 OS=Plutella xylostella G... [more]
RS29_SCALT2.269e-1563.4640S ribosomal protein S29 OS=Scarabaeus laticollis... [more]
RS29_BOMMO2.964e-1563.4640S ribosomal protein S29 OS=Bombyx mori GN=RpS29 ... [more]
RS29_LONON1.921e-1461.5440S ribosomal protein S29 OS=Lonomia obliqua GN=Rp... [more]
RS29_LYSTE2.509e-1463.4640S ribosomal protein S29 OS=Lysiphlebus testaceip... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-C09-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756323 ID=EY756323; Name=EY756323; organism=Citrus sinensis; type=EST; length=464bp
CCACGCGTCCGGAAGAGTGCGGCACCAGAGTACAGCAGAGCACGACAGGA
CAGGAGAGAAGAGATGGGTCACTCCAACGTATGGAATTCGCATCCCAAGA
CCTACGGCCCTGGATCTCCTGCTTGCCGCGTTTGCGGGAACCCTCATGCG
ATTATCATAAAGTACGGCCTCATGTGCTGCAGGCAGTGCTTCCGCAGCTA
CGCCTAGGAGATCGGTTTCCTCGAGTACCGCTGAAGAAGATGGCTGTCAA
GGCTTTGCAGTGGACTGTGGAGCATACCTACGAATGGAGAAATTTTCAGT
TTTCGTGTGATTTCTTTTTAGTTTTTCACAAGTAGCATAGAGCGTGTGAA
TCAATTAGAGCTTGAACTTTGTAGATGGATTTCTTTGCTGTCTTAATATG
ACTGCCAATCTTATTACTTGAATGTTCTCTTGNNCCTTTTGATGCGAGGT
TCCCTGAANATGCT
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