EY756165

Overview
NameEY756165
Unique NameEY756165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7308 contig Csv1_Contig7308:299..1171. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756165 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.865e-28
Identity = 79/211 (37.44%), Postives = 109/211 (51.66%), Query Frame = 1
Query:   13 LPLLVYFHGGGFCIETAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGSGPEDWLNRNADFE-QVFYSGDSAGANIAHHMAIRNGGEIIDGFNVVGIVLIHPYFWGVEPVGSEPT-DVKIRA---GTERFWRFTCPSTSGLDDPWVNPCAD-GSSLASLGCARVLVFAAEKDFLCPRGWFYYEKLKESG 627
            +P+L++FHGG F   +A S  Y  +   LV+   ++ VSVDYRR+PEH  P AY+D W+A+ WV S V       WL    D    V+ +GDS+G NIAH++A+R   E   G  V+G +L+HP F G E   SE T D K        + +WR   P     D P  NP    G SL  +   + LV  A  D +      Y + LK++G
Sbjct:  106 VPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRV-------WLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATNE---GVKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKTG 306          
BLAST of EY756165 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.422e-27
Identity = 82/249 (32.93%), Postives = 126/249 (50.60%), Query Frame = 1
Query:   16 PLLVYFHGGGFCIETAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGSGPEDWLNRNADFE-QVFYSGDSAGANIAHHMAIRNGGEIIDGFNVVGIVLIHPYFWGVEPVGSE-PTDVK---IRAGTERFWRFTCPSTSGLDDPWVNPCA-DGSSLASLGCARVLVFAAEKDFLCPRGWFYYEKLKESGWGGHVEIVESKGEQHVVHLINPTCENAGSMLKKICSFFH 744
            P++++FHGG F   +A S  Y +     V  +  + VSV+YRRAPEH  P AY+D W A+KWV S       + ++    D + +VF SGDS+G NIAHH+A+R   E   G  V G +L++  F G E   SE   D K        + +W+   P  +  D P  NP   +G  L  L  A+ L+  +  D  C R   Y + L+E   G HV++V+ +      +L+ P   +   ++++I  F +
Sbjct:  114 PVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMS-------QPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAADE---GVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDRQLAYADALRED--GHHVKVVQCENATVGFYLL-PNTVHYHEVMEEISDFLN 349          
BLAST of EY756165 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.057e-25
Identity = 74/212 (34.91%), Postives = 109/212 (51.42%), Query Frame = 1
Query:   13 LPLLVYFHGGGFCIETAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGSGPEDWLNRNADFE-QVFYSGDSAGANIAHHMAIRNGGEIIDGFNVVGIVLIHPYFWGVEPVGSEPT-----DVKIRAGTERFWRFTCPSTSGLDDPWVNPCAD-GSSLASLGCARVLVFAAEKDFLCPRGWFYYEKLKESG 627
            +P++++FHGG F   +A S  Y      LV     + VSV+YRRAPE+P P AY+D W A+ WV S         WL    D +  +F +GDS+G NIAH++A+R G     G +V+G +L++P F G E   SE +      V +R   + +W+   P     + P  NP +  G SL  +   + LV  A  D +      Y E LK++G
Sbjct:  106 VPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNS-------RSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE---SGIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVR-DRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAG 306          
BLAST of EY756165 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.074e-23
Identity = 74/212 (34.91%), Postives = 105/212 (49.53%), Query Frame = 1
Query:   13 LPLLVYFHGGGFCIETAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGSGPEDWLNRNADFE-QVFYSGDSAGANIAHHMAIRNGGEIIDGFNVVGIVLIHPYFWGVEPVGSEPT-----DVKIRAGTERFWRFTCPSTSGLDDPWVNPCADGS-SLASLGCARVLVFAAEKDFLCPRGWFYYEKLKESG 627
            +P++V+FHGG F   +A S  Y      LV     + VSV+YRRAPE+  P AY+D W  +KWV S         WL    D + ++F +GDS+G NI H++A+R     ID   V+G +L++P F G E   SE        V +R   + +WR   P     + P  +P    S SL  L   + LV  A  D +      Y E LK++G
Sbjct:  104 VPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNS-------SSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVESRID---VLGNILLNPMFGGTERTESEKRLDGKYFVTVR-DRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQDWQLKYAEGLKKAG 304          
The following BLAST results are available for this feature:
BLAST of EY756165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L2_ARATH2.865e-2837.44Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ1.422e-2732.93Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L1_ARATH5.057e-2534.91Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L3_ARATH8.074e-2334.91Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-D07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756165 ID=EY756165; Name=EY756165; organism=Citrus sinensis; type=EST; length=872bp
CCACGCGTCCGACTTCCCCTTCTTGTTTATTTTCACGGCGGAGGTTTTTG
CATCGAGACTGCTTTTTCACCAACTTACCATAATTACCTCAACGACTTGG
TCTCTGAAGCTAACATCATCGCAGTCTCGGTCGACTACCGAAGAGCCCCA
GAGCATCCCCTTCCTATCGCTTATGAAGATTCATGGGACGCAGTCAAATG
GGTTGCTTCCCATGTTGACGGAAGTGGCCCCGAAGATTGGCTCAACCGTA
ATGCTGATTTTGAGCAAGTGTTTTACTCTGGGGACAGCGCTGGTGCTAAT
ATTGCTCATCACATGGCAATAAGAAACGGTGGAGAAATCATCGACGGCTT
TAATGTTGTTGGTATTGTCTTGATTCATCCATACTTTTGGGGTGTTGAAC
CTGTTGGTTCCGAGCCTACTGATGTTAAAATAAGAGCTGGAACGGAGAGA
TTTTGGCGATTTACTTGTCCAAGCACAAGCGGGCTCGATGATCCGTGGGT
TAATCCGTGTGCTGACGGTTCGAGCCTCGCGAGCCTGGGGTGCGCCAGGG
TGCTGGTGTTTGCTGCGGAGAAGGATTTCCTGTGCCCTAGAGGATGGTTT
TACTATGAGAAGTTGAAGGAAAGTGGGTGGGGAGGCCATGTAGAGATAGT
TGAGTCTAAAGGAGAGCAACATGTNGTCCATTTGATCAATCCCACTTGTG
AAAATGCTGGGTCTATGCTCAAGAAAATTTGTTCTTTCTTTCATCAGGAT
AAAGCCTGAAACTGAAGAAGTATTTGCTTTGGTTCGGCAAATATTTGGGG
AGGAAGAATGATAGGGAAATATACTCTACTGGGGGGGGGGAATTTTCTTC
CTTTTTTTTTTTTTTCTCCCCA
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