EY756163

Overview
NameEY756163
Unique NameEY756163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756163_ssr187 microsatellite EY756163_ssr187:187..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7143 contig Csv1_Contig7143:325..1255. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756163 vs. ExPASy Swiss-Prot
Match: PATL1_ARATH (Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.205e-18
Identity = 49/111 (44.14%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  295 EVAEAAEDDGAKXXXXXXXXXXXXXXXXPQEQLPQSPEPKPEAKPAVTSENESKXXXXXXXXXXXXVYIWGIPLLADERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKE 627
            E A +AE+DG K                 +E +     P+    P V    E+             V IWG+PLL DERSDVIL KFLRARDFKVK+A TMLKNT++WRKE
Sbjct:  191 EKASSAEEDGTKTVEAI------------EESIVSVSPPESAVAPVVV---ETVAVAEAEPVEPEEVSIWGVPLLQDERSDVILTKFLRARDFKVKEALTMLKNTVQWRKE 286          

HSP 2 Score: 30.8018 bits (68), Expect = 2.205e-18
Identity = 17/39 (43.59%), Postives = 20/39 (51.28%), Query Frame = 3
Query:  669 FGQTVFMHGFDKEGHPVAXMCTGSFRTRS-FIRKRFLTK 782
            F + VF HG DKEGH V     G F+ +  F  K  L K
Sbjct:  302 FEKMVFAHGVDKEGHVVIYSSYGEFQNKELFSDKEKLNK 340          
BLAST of EY756163 vs. ExPASy Swiss-Prot
Match: PATL3_ARATH (Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.920e-18
Identity = 60/130 (46.15%), Postives = 70/130 (53.85%), Query Frame = 1
Query:  493 VYIWGIPLLADERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKEFXXXXXXXXXXXXXXXKRCSCTDXXXXXXXXXXCVRGVSEQGALSENVF*RREKQK-FPEWRIQFLKRASGN-*FQAGGXSTIVQ 876
            V IWGIPLL D+RSDV+LLKFLRAR+FKVKD+F MLKNTI+WRKEF               K                 V G  +   L    F   EK+K F   RIQFL+R+     F +GG STI Q
Sbjct:  150 VKIWGIPLLEDDRSDVVLLKFLRAREFKVKDSFAMLKNTIKWRKEFKIDELVEEDLVDDLDKVVFMHGHDREGHPVCYNVYGEFQNKELYNKTFSDEEKRKHFLRTRIQFLERSIRKLDFSSGGVSTIFQ 279          
BLAST of EY756163 vs. ExPASy Swiss-Prot
Match: PATL2_ARATH (Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 7.191e-17
Identity = 55/123 (44.72%), Postives = 69/123 (56.10%), Query Frame = 1
Query:  493 VYIWGIPLLADERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKEFXXXXXXXXXXXXXXXKRCSCTDXXXXXXXXXXCVRGVSEQGAL----------SENVF*RREK-QKFPEWRIQFLKR 828
            V IWGIPLL DERSDVILLKFLRARDFKVK+AFTMLKNT++WRKE                ++   T              GV +QG +          ++ +F  +EK  KF +WRIQF ++
Sbjct:  351 VSIWGIPLLEDERSDVILLKFLRARDFKVKEAFTMLKNTVQWRKENKIDDLVSEDLEGSEFEKLVFT-------------HGVDKQGHVVIYSSYGEFQNKEIFSDKEKLSKFLKWRIQFQEK 460          
BLAST of EY756163 vs. ExPASy Swiss-Prot
Match: PATL5_ARATH (Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.356e-15
Identity = 51/128 (39.84%), Postives = 69/128 (53.91%), Query Frame = 1
Query:  499 IWGIPLLADERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKEFXXXXXXXXXXXXXXXKRCSCTDXXXXXXXXXXCVRGVSEQGALSENVF*RREK-QKFPEWRIQFLKRASGN-*FQAGGXSTIVQ 876
            IWG+PLL D+R+DV+LLKFLRARDFK ++A++ML  T++WR +F               K                 V G  +   L +  F   EK ++F  WRIQFL+++  N  F AGG STI Q
Sbjct:  327 IWGVPLLKDDRTDVVLLKFLRARDFKPQEAYSMLNKTLQWRIDFNIEELLDENLGDDLDKVVFMQGQDKENHPVCYNVYGEFQNKDLYQKTFSDEEKRERFLRWRIQFLEKSIRNLDFVAGGVSTICQ 454          
BLAST of EY756163 vs. ExPASy Swiss-Prot
Match: PATL6_ARATH (Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.552e-11
Identity = 50/139 (35.97%), Postives = 71/139 (51.08%), Query Frame = 1
Query:  499 IWGIPLLA-DERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKEFXXXXXXXXXXXXXXXKRCSCTDXXXXXXXXXXCVR--GVSEQGALSENVF*RREK-QKFPEWRIQFLKR-ASGN*FQAGGXSTIVQA*LEDLQD 900
            +WG+ LL  D+++DVILLKFLRARDFKV D+  ML+  + WR+EF               +                C    GV ++  + E VF   EK  KF  WR+Q L+R      F+ GG ++I+Q  + DL+D
Sbjct:   69 MWGVSLLGGDDKADVILLKFLRARDFKVADSLRMLEKCLEWREEFKAEKLTEEDLGFKDLEGKVAYMRGYDKEGHPVCYNAYGVFKEKEMYERVFGDEEKLNKFLRWRVQVLERGVKMLHFKPGGVNSIIQ--VTDLKD 205          
BLAST of EY756163 vs. ExPASy Swiss-Prot
Match: PATL4_ARATH (Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 1.906e-11
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 1
Query:  493 VYIWGIPLLAD---ERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKE 627
            + +WG+PLL     E +DVILLKFLRARDFKV +AF MLK T++WRK+
Sbjct:  203 IELWGVPLLPSKGAESTDVILLKFLRARDFKVNEAFEMLKKTLKWRKQ 250          

HSP 2 Score: 25.0238 bits (53), Expect = 1.906e-11
Identity = 19/57 (33.33%), Postives = 26/57 (45.61%), Query Frame = 3
Query:  657 LG*RFGQTV----FMHGFDKEGHPVA--------XMCTGSFRTR-SFIRKRFLTKRK 788
            LG  FG+ +    +M+G D+E HPV             GS + R  F+R RF    K
Sbjct:  257 LGEEFGEDLATAAYMNGVDRESHPVCYNVHSEELYQTIGSEKNREKFLRWRFQLMEK 313          
The following BLAST results are available for this feature:
BLAST of EY756163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PATL1_ARATH2.205e-1844.14Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 S... [more]
PATL3_ARATH2.920e-1846.15Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 S... [more]
PATL2_ARATH7.191e-1744.72Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 S... [more]
PATL5_ARATH1.356e-1539.84Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 S... [more]
PATL6_ARATH1.552e-1135.97Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 S... [more]
PATL4_ARATH1.906e-1162.50Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 S... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-D04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756163 ID=EY756163; Name=EY756163; organism=Citrus sinensis; type=EST; length=917bp
CCACGCGTCCGAGAAAGCACTAGAGTGGGTGATCTTCCGGATAATGAGAA
GAAAGCGCTAGACGAGCTTAAGCAGGTTGTTCAAGAAGCGCTTAACAAGC
ATGAGTTTAGTGCTAAAACAACACCAACACCAGCACCGGCAGCAACAAAA
GAAGAAGAAAAGAAAGAGACTGAGGCTGTGGTGGCAGAGGAGGAGGAGAA
GCCAGAGCAACCTTCGGAACCAACAAAGCCAGAACCAGAAATTGCTGCTC
AAGAAGAAAAGGAAACTGAGGTTATTGAAGAAAAGACAGCTCCAGAAGTT
GCTGAAGCTGCAGAAGATGATGGTGCCAAAACTGTAGAGGCCATAGAAGA
GACAGTTGTAGCCGTATCATCTTCTGTTCCACAAGAGCAATTGCCTCAAT
CTCCAGAGCCAAAGCCTGAGGCAAAGCCTGCTGTCACTTCAGAAAATGAG
TCAAAAGGCACGACGACTGAACCCGAAATGGGGCCTGAAGAGGTTTACAT
ATGGGGCATTCCTCTCCTGGCTGATGAGAGAAGCGATGTCATTCTCTTGA
AGTTCCTCCGCGCCAGAGACTTCAAGGTCAAAGATGCATTCACAATGCTC
AAGAACACAATTCGATGGAGAAAGGAATTCGGCATTGATGATTTGATTGG
GCAAGACTTGGGTGACGATTTGGACAAACGGTGTTCATGCACGGATTTGA
CAAAGAAGGGCACCCTGTTGCTANCATGTGTACGGGGAGTTTCAGAACAA
GGAGCTTTATCAGAAAACGTTTTCTGACGAAGAGAAAAGCAGAAATTTCC
TGAGTGGCGGATTCAATTCCTNAAAAGGGCATCAGGAAATTGATTTCAGG
CCGGGGGGNATTCTACTATTGTCCAGGCATGACTTGAGGATCTCCAGGAC
TGCTAATGGGAGCTTAA
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