EY756087

Overview
NameEY756087
Unique NameEY756087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5528 contig Csv1_Contig5528:147..883. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756087 vs. ExPASy Swiss-Prot
Match: FBL8_ARATH (Putative F-box/LRR-repeat protein 8 OS=Arabidopsis thaliana GN=FBL8 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.720e-63
Identity = 122/188 (64.89%), Postives = 148/188 (78.72%), Query Frame = 1
Query:   10 RANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSGEAEHQDAS--DGGVQENGIEFPPQMVQ-PSV--ASSRNTRSTSFKTRLGLLSGRSLVAC 558
            + NRIGDEGLI VAK C NLQELVLIGVNPT++SLE + SNC NLERLALCGSDTVGD E+ CIA KC+AL+KLCIK+CP++D G++AL  GCPNL+KVKVKKCR VTT+GAD LR RR  +VVNLD+ E    + S  +GG QEN +EFPP  +Q P++  AS   +RS+SFK RLG LS R+ V+C
Sbjct:  353 KTNRIGDEGLIVVAKYCWNLQELVLIGVNPTKLSLEAIVSNCLNLERLALCGSDTVGDTELCCIAEKCLALRKLCIKNCPITDDGIKALGNGCPNLLKVKVKKCRGVTTQGADLLRKRRALLVVNLDAPETPIVEGSVGEGGAQENAVEFPPSRLQIPTIGLASGSTSRSSSFKLRLGFLSQRNFVSC 540          
BLAST of EY756087 vs. ExPASy Swiss-Prot
Match: FB37_ARATH (F-box protein At1g47056 OS=Arabidopsis thaliana GN=At1g47056 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.183e-58
Identity = 118/191 (61.78%), Postives = 140/191 (73.30%), Query Frame = 1
Query:   10 RANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSGEAEHQDASD----GGVQENGIEFP---PQMVQPSVASSRNTRSTSFKTRLGLLSGRSLVACT 561
            +AN IGDEGL+AVAK C  LQELVLIGVNPT +SL +LA+ C NLERLALCG DT GD E+SCIAAKC AL+KLCIK+CP+SD G+E LA GCP L KVK+KKC+ V    ADWLR  R  + VN D+ E EH++A+     GG QENGIEFP    Q++  S+ASS   RS  FK+ +GL SG SLV CT
Sbjct:  320 KANLIGDEGLVAVAKFCSQLQELVLIGVNPTTLSLGMLAAKCLNLERLALCGCDTFGDPELSCIAAKCPALRKLCIKNCPISDVGIENLANGCPGLTKVKIKKCKGVLGGCADWLRTVRPMLSVNADTMEQEHEEAASNDVVGGSQENGIEFPQLNSQIMASSIASSSRNRSGYFKSGIGLFSGMSLVPCT 510          
BLAST of EY756087 vs. ExPASy Swiss-Prot
Match: SKIP2_ARATH (F-box protein SKIP2 OS=Arabidopsis thaliana GN=SKIP2 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.813e-52
Identity = 109/191 (57.07%), Postives = 133/191 (69.63%), Query Frame = 1
Query:   10 RANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSGEAEHQDASDGGVQENGIEFPPQM----VQPSVASSR---NTRSTSFKTRLGLLSGRSLVACT 561
            R NRIGDEGL++VAK C NLQELVLIGVN T +SL  +ASNC+ LERLALCGS T+GD EI+CIA KC AL+K CIK CPVSD G+EALA GCPNLVK+KVKKC+ VT E  DWLR +R  +VV++D  E E     DG V E  +E P       +   + SS     +R    +++LG L+GR+LV CT
Sbjct:  324 RTNRIGDEGLLSVAKHCLNLQELVLIGVNATHMSLAAIASNCEKLERLALCGSGTIGDTEIACIARKCGALRKFCIKGCPVSDRGIEALAVGCPNLVKLKVKKCKVVTGEIGDWLREQRRTLVVSMDGDETEAVVVVDGEV-ETVVEEPRVAQAGGIVAEIGSSNGGGGSRLAMIRSKLGFLAGRNLVTCT 513          
BLAST of EY756087 vs. ExPASy Swiss-Prot
Match: FBL16_ARATH (F-box/LRR-repeat protein 16 OS=Arabidopsis thaliana GN=FBL16 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.392e-48
Identity = 106/192 (55.21%), Postives = 128/192 (66.67%), Query Frame = 1
Query:   10 RANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSGEAEHQDASDGG---VQENGI--EFPPQMVQP---SVASSRNTRSTSFKTRLGLLSGRSLVACT 561
            R  RIGD+GL++VAK C NLQELVLIGV+ T +SL  +ASNC+ LERLALCGS T+GD EI CIA KCV L+K CIK C +SD G++ALA GCP LVK+KVKKC  VT E  +WLR RR  +VV++D  E       DGG   V E  +  E PP +       VA          KT+LGLL+GR+LVACT
Sbjct:  318 RVKRIGDQGLMSVAKHCLNLQELVLIGVDATYMSLSAIASNCKKLERLALCGSGTIGDAEIGCIAEKCVTLRKFCIKGCLISDVGVQALALGCPKLVKLKVKKCSLVTGEVREWLRERRMTLVVSMDDDETNGVGLVDGGDQRVLETVVEEEAPPVIDGDGGLGVAGGGRLGLAILKTKLGLLAGRNLVACT 509          
The following BLAST results are available for this feature:
BLAST of EY756087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FBL8_ARATH2.720e-6364.89Putative F-box/LRR-repeat protein 8 OS=Arabidopsis... [more]
FB37_ARATH1.183e-5861.78F-box protein At1g47056 OS=Arabidopsis thaliana GN... [more]
SKIP2_ARATH4.813e-5257.07F-box protein SKIP2 OS=Arabidopsis thaliana GN=SKI... [more]
FBL16_ARATH9.392e-4855.21F-box/LRR-repeat protein 16 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-003-D11-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756087 ID=EY756087; Name=EY756087; organism=Citrus sinensis; type=EST; length=737bp
CCACGCGTCCGAGCCAATCGTATCGGCGATGAAGGACTAATAGCTGTAGC
AAAATGTTGCCCTAATTTGCAAGAGTTAGTTCTTATTGGCGTGAATCCTA
CCAGAGTGAGTCTGGAAGTTTTGGCTTCAAATTGTCAAAATCTAGAGCGA
TTAGCCTTGTGTGGTAGTGACACTGTTGGAGATGTGGAAATATCTTGCAT
AGCTGCAAAATGTGTTGCTTTAAAGAAGCTTTGTATCAAGAGCTGTCCCG
TTTCTGATCATGGAATGGAAGCTCTGGCTGGTGGGTGTCCGAATTTGGTG
AAAGTGAAGGTGAAGAAGTGCCGAGCAGTGACCACTGAAGGCGCGGATTG
GTTGAGAGCAAGGAGGGAATATGTTGTTGTGAATTTAGATAGCGGTGAGG
CTGAACATCAGGATGCTAGTGATGGCGGAGTTCAAGAGAACGGTATCGAG
TTTCCTCCCCAAATGGTGCAGCCTAGTGTTGCATCGAGTAGGAATACTCG
ATCAACCTCATTCAAGACAAGGCTAGGGCTATTGAGTGGGCGGAGTTTGG
TTGCTTGCACTTTGAGGAGGTGGTCAAGTGGTAATAGCAGTTCAAGAAAT
AGTTAATTATAAAAACTGAACTCTGTTCTTCAACTTTGTTTACATTATTT
TCTNGTGGATTGCCTGATTTACAGCCTTTCTTGTATTTAATTAATTCTGT
GCTGTGTGTTTATTGTCTAAAAAAAAAAAAAAAAAAA
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